BAC Information

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BAC

Clone NameB6Ng01-336L06
Chromosome9 (Build37)
Map Location 20,318,658 - 20,445,941
singlet/doubletdoublet
Overlap gene5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12
Upstream geneOlfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426
Downstream geneUbl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336L06.bB6Ng01-336L06.g
ACCGA121546GA121547
length1,094614
definitionB6Ng01-336L06.b B6Ng01-336L06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,318,658 - 20,319,754)(20,445,328 - 20,445,941)
sequence
gaattcctccctctactcaaatagcccttcccctccctgaagtagtaccc
atggtaacccagctcctggaacttttgataaatgctgacacaccctgggg
gctggaattattccatgggtaacaaccagaaatttcctttgccaagatca
actgccagagggacctgaaggggccagacagctttaaaatgtccttatca
ccttctgtatattctactcaaggatcccagggagcaagctagacatttct
acttcaagtgatttaattaaggaaaaaaaaaaatttcctcacaagtatag
ccagaatcttgggttttagtcaattccaggtgtagtcaggctaacaagca
gtagctgccataataagcacacattagatacaagaatgttcgttcatgag
gaggcctgaatttgatttatcaagagtccctaattgctctccatcttatt
gagagcttgaagattcaactagtctagctagccagcttactcaacaggtc
ctttatctctgcctcctaagtgctaaaattacagagtagctgccacaccc
acccaatatttatgtggattccagggatcccgattccattctccagaacc
aagaaagggctttgaccactgaaccatctccccagcccaagatgctgtgc
tctagtatacagatgttccctgggatctcaggtgccctagagaccctaaa
atatacagctgtataaatccttgtgtaaaaaccatactatatgtgtgtgt
tacttacatacttcttggtatgaagtcaccaggttactcaaaatatctaa
cacaggtttgaaaatgttgttcagctggcagagtatatgcctagcatgta
tgaagccctgggttccatccctggcacagcataagccaggtactggagca
tgaaatcccagcacctacgacatacagacaaagatcagagttcaagacta
tcttttgagctgggcagcagtgtcacatgcctgtaaccctagaactcaga
agcagatgcaggtagcgtggtctacagagtgagtttcagggcagcaggct
acacaaaggaaacctgtctctggaggtgggggaataggtggggg
gaattctgcttctccagtgctgggactaagggtatgcaccaccatactct
gctggtttggtatttaagtgagttcgtgcttggaatttttctgcctgtcc
tagtgccagcctttacctccccttcaatgctcagacctcagtttctcatc
taagatatggggattaaaaataatgcttgtaggccaggcagtggtggcgc
aggcctttaatcccatcccttgggaggcagaggcaggcagatttctgagt
tcgaggccagcctggtctacagagtgagttccaggacagccagggctaca
cagagaaaccctgtctggaaaaacaaaaaaaagtaccttcatgtttcatg
tctgatgtattgtagaacttagccagtatggccagtgtgtgtctccagca
tttaataaatgcaagcttatagcttttcagttttctagttttgttgtttt
ggttttgaggtgggtctcatgtatcccaaaattagcttctagctggctgt
gtagccaaggatggcagaaggttctgctccttttggtcttttcctcttga
gtgctgggatcacaggtatgtgctatcacatagttgatgtggtgctgaga
acaaaatccacggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_20318658_20319754
seq2: B6Ng01-336L06.b_48_1140

seq1  GAATTCCTCCCTCTACTCAAATAGCCCTTCCCCTCCCTGAAGTAGTACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCTCTACTCAAATAGCCCTTCCCCTCCCTGAAGTAGTACCC  50

seq1  ATGGTAACCCAGCTCCTGGAACTTTTGATAAATGCTGACACACCCTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAACCCAGCTCCTGGAACTTTTGATAAATGCTGACACACCCTGGGG  100

seq1  GCTGGAATTATTCCATGGGTAACAACCAGAAATTTCCTTTGCCAAGATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAATTATTCCATGGGTAACAACCAGAAATTTCCTTTGCCAAGATCA  150

seq1  ACTGCCAGAGGGACCTGAAGGGGCCAGACAGCTTTAAAATGTCCTTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGAGGGACCTGAAGGGGCCAGACAGCTTTAAAATGTCCTTATCA  200

seq1  CCTTCTGTATATTCTACTCAAGGATCCCAGGGAGCAAGCTAGACATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTATATTCTACTCAAGGATCCCAGGGAGCAAGCTAGACATTTCT  250

seq1  ACTTCAAGTGATTTAATTAAGGAAAAAAAAAAATTTCCTCACAAGTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAGTGATTTAATTAAGGAAAAAAAAAAATTTCCTCACAAGTATAG  300

seq1  CCAGAATCTTGGGTTTTAGTCAATTCCAGGTGTAGTCAGGCTAACAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCTTGGGTTTTAGTCAATTCCAGGTGTAGTCAGGCTAACAAGCA  350

seq1  GTAGCTGCCATAATAAGCACACATTAGATACAAGAATGTTCGTTCATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGCCATAATAAGCACACATTAGATACAAGAATGTTCGTTCATGAG  400

seq1  GAGGCCTGAATTTGATTTATCAAGAGTCCCTAATTGCTCTCCATCTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTGAATTTGATTTATCAAGAGTCCCTAATTGCTCTCCATCTTATT  450

seq1  GAGAGCTTGAAGATTCAACTAGTCTAGCTAGCCAGCTTACTCAACAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTTGAAGATTCAACTAGTCTAGCTAGCCAGCTTACTCAACAGGTC  500

seq1  CTTTATCTCTGCCTCCTAAGTGCTAAAATTACAGAGTAGCTGCCACACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCTCTGCCTCCTAAGTGCTAAAATTACAGAGTAGCTGCCACACCC  550

seq1  ACCCAATATTTATGTGGATTCCAGGGATCCCGATTCCATTCTCCAGAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATATTTATGTGGATTCCAGGGATCCCGATTCCATTCTCCAGAACC  600

seq1  AAGAAAGGGCTTTGACCACTGAACCATCTCCCCAGCCCAAGATGCTGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGGCTTTGACCACTGAACCATCTCCCCAGCCCAAGATGCTGTGC  650

seq1  TCTAGTATACAGATGTTCCCTGGGATCTCAGGTGCCCTAGAGACCCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTATACAGATGTTCCCTGGGATCTCAGGTGCCCTAGAGACCCTAAA  700

seq1  ATATACAGCTGTATAAATCCTTGTGTAAAAACCATACTATATGTGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGCTGTATAAATCCTTGTGTAAAAACCATACTATATGTGTGTGT  750

seq1  TACTTACATACTTCTTGGTATGAAGTCACCAGGTTACTCAAAATATCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACATACTTCTTGGTATGAAGTCACCAGGTTACTCAAAATATCTAA  800

seq1  CACAGGTTTGAAAATGTTGTTCAGCTGGCAGAGTATATGCCTAGCATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTTTGAAAATGTTGTTCAGCTGGCAGAGTATATGCCTAGCATGTA  850

seq1  TGAAGCCCTGGGTTCCATCCCTGGCACAGCATAAGCCAGGTACTGGAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCCTGGGTTCCATCCCTGGCACAGCATAAGCCAGGTACTGGAGCA  900

seq1  TGAAATCCCAGCACCTACGACATACAGACAAAAGATCAGGAGTTCAAGAC  950
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  TGAAATCCCAGCACCTACGACATACAGAC-AAAGATCA-GAGTTCAAGAC  948

seq1  TATC-TTTGAGCTGGGCAGCAGTGTCACATGCCTGTAACCCTAGAACTCA  999
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTGAGCTGGGCAGCAGTGTCACATGCCTGTAACCCTAGAACTCA  998

seq1  GAAGGCAGAGGCAGGGTAGCGTGGTCTACAGAGTGAGTTCCAGGGCAGCC  1049
      ||| ||||| ||| ||||||||||||||||||||||||| ||||||||| 
seq2  GAA-GCAGATGCA-GGTAGCGTGGTCTACAGAGTGAGTTTCAGGGCAGC-  1045

seq1  AGGGCTACACAAAGAAACCCTGTCTCTGGAGGTGGGG--ATAGGGTGGGG  1097
        |||||||||||| || |||||||||||||||||||  ||| |||||||
seq2  -AGGCTACACAAAGGAAACCTGTCTCTGGAGGTGGGGGAATA-GGTGGGG  1093

seq1: chr9_20445328_20445941
seq2: B6Ng01-336L06.g_68_681 (reverse)

seq1  AACGTGGATTTTGTTCTCAGCACCACATCAACTATGTGATAGCACATACC  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGGATTTTGTTCTCAGCACCACATCAACTATGTGATAGCACATACC  50

seq1  TGTGATCCCAGCACTCAAGAGGAAAAGACCAAAAGGAGCAGAACCTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCCCAGCACTCAAGAGGAAAAGACCAAAAGGAGCAGAACCTTCTG  100

seq1  CCATCCTTGGCTACACAGCCAGCTAGAAGCTAATTTTGGGATACATGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTGGCTACACAGCCAGCTAGAAGCTAATTTTGGGATACATGAGA  150

seq1  CCCACCTCAAAACCAAAACAACAAAACTAGAAAACTGAAAAGCTATAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTCAAAACCAAAACAACAAAACTAGAAAACTGAAAAGCTATAAGC  200

seq1  TTGCATTTATTAAATGCTGGAGACACACACTGGCCATACTGGCTAAGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTATTAAATGCTGGAGACACACACTGGCCATACTGGCTAAGTTC  250

seq1  TACAATACATCAGACATGAAACATGAAGGTACTTTTTTTTGTTTTTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATACATCAGACATGAAACATGAAGGTACTTTTTTTTGTTTTTCCAG  300

seq1  ACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGAC  350

seq1  CAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGGGAT  400

seq1  GGGATTAAAGGCCTGCGCCACCACTGCCTGGCCTACAAGCATTATTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAAAGGCCTGCGCCACCACTGCCTGGCCTACAAGCATTATTTTTA  450

seq1  ATCCCCATATCTTAGATGAGAAACTGAGGTCTGAGCATTGAAGGGGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCATATCTTAGATGAGAAACTGAGGTCTGAGCATTGAAGGGGAGGT  500

seq1  AAAGGCTGGCACTAGGACAGGCAGAAAAATTCCAAGCACGAACTCACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGGCACTAGGACAGGCAGAAAAATTCCAAGCACGAACTCACTTA  550

seq1  AATACCAAACCAGCAGAGTATGGTGGTGCATACCCTTAGTCCCAGCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAAACCAGCAGAGTATGGTGGTGCATACCCTTAGTCCCAGCACTG  600

seq1  GAGAAGCAGAATTC  614
      ||||||||||||||
seq2  GAGAAGCAGAATTC  614