BAC Information

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BAC

Clone NameB6Ng01-336P18
Chromosome9 (Build37)
Map Location 5,386,623 - 5,510,140
singlet/doubletdoublet
Overlap genenone
Upstream gene8430410K20Rik, Gria4, EG664889, Casp1, Casp4, Casp12
Downstream geneLOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336P18.bB6Ng01-336P18.g
ACCGA121747GA121748
length1,1731,130
definitionB6Ng01-336P18.b B6Ng01-336P18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,386,623 - 5,387,806)(5,508,996 - 5,510,140)
sequence
gaattctcaaaggtggaatcttaaaggtccaagaagcacctaaagaaatg
ttcaacaatcttagtcctcaggcaaatgcaagtcaaaacaaccctgagat
tccacctcacaccagtcagaaaggctaagatcaaaagctcaggtggcagc
agatgctggcaagcatgtggagaaagaggaacactactccaatattggtg
gcattacaagctggtacaaccactctgtaaatcagtctgatggtttcaca
gaaaattggacatagtagtacctgggaacccagctatacctctcctggcc
atattctcaactgatgccccaacattttataagagtatatctgttcatag
tagtcttctctataatatccagaagctagaaaccaatgtactttttactc
atttactgaataatatttactgatcacaatatatgcctacatcattacac
acaaataactcagcagacaattcaattctttgttagtccttgcagattaa
gggctcatacctatatcattgccactgcctttatgtcaatcacagctcta
cactgtagcctagtaccacctttaatcattcagtgacctcagcacagata
aatgtggattcattttttttccactgcaaaagtctcatttttattagttt
tttttttttgcgattttcttacaatgtattttgatcaaatgccccatttt
ttcccatcttcccagattcatccccccttccctactcatccaaatttttg
tagatgttaattttaacccaccaagtacattatgtactgattgtatatgc
ttggacgtgagtgctttactgttttttatatattcatttattttttatta
gatgttttccttatttacattttcaaatgttatcccctttcctagtttcc
cctctgaaaaccctctaatccctccccctccccctgctcaccaacgcacc
cattcagtcttagccctggcattcccctaatactggggcatagaaccttc
acaggaccaagtgcctctcctcccattgataccactaggccatcctctgc
tacaatatgcagctagaaccatgagtcccaccatttgtttcatgttggtg
ttagttcccagagctctgggggttctgaataggtcatatgtgtccaccta
tggggcctgcatcttaacttcct

gaattccttcaacttttggggtcctataaagggttaggagtccatgtcca
atggaacaatgtggaaatgtttcccagatataggtttaagagatggacca
acttctatctcctttgtttttaacattcttgaaaacagagctatagacag
tataggaggcccaagtttccagatgaagataaagtgaagtgttttgcatc
attttgttggatttattcaagatatttacatctacatttattagattctt
tcactgttcttttctaataatgttttaatatcacttggggcatttgtaga
aacatttagactaatatgtaagtaaatactacaaataatatttaacttgg
aaacagtaaacaagaatttatcttattttaattacatcaaagttatataa
agaaatagatatttcaaaactttaaagggagttttatttctagtaatgtt
ttagagaactctgaaataatagaattatattatatagatgtcagcttttt
aaaagtttttccgtatatttaatttgattccaattaaaaattgtagcagt
tttatctctttgataggacaaaagctaagtctaaaatttgtagagggtca
aagaagatatcataagagcagatcaataaacaacatataattggtggttc
attataaaactttatacacagaaattatttaatctacatcaaaatagcac
tgtaggcttatattttaataagggttcttaaatactttaaccaccctcct
agcccatgaactgaaggtagtggagaaaaaaggttaatagaaaatagggt
gtagacctgtttagaagtagaactttggggcaatttcaaacagggattag
ttcaattggcaaacaccaaacatgcatcactaacagtcactagatccaga
agaaacagagagattatttccaattggcacagtctgtggaaacagcaaga
gtcagcctggcactgtactaatagcacatagttttgttttttattgtagt
gttttatcacaatgctctgtagtacagctgagtaagggtatggtgattcc
cctacatttttaattttattattataatataatattactatctaataata
tgatttcctcaattacatttcaatgcatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5386623_5387806
seq2: B6Ng01-336P18.b_49_1221

seq1  GAATTCTCAAAGGTGGAATCTTAAAGGTCCAAGAAGCACCTAAAGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAGGTGGAATCTTAAAGGTCCAAGAAGCACCTAAAGAAATG  50

seq1  TTCAACAATCTTAGTCCTCAGGCAAATGCAAGTCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAATCTTAGTCCTCAGGCAAATGCAAGTCAAAACAACCCTGAGAT  100

seq1  TCCACCTCACACCAGTCAGAAAGGCTAAGATCAAAAGCTCAGGTGGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGTCAGAAAGGCTAAGATCAAAAGCTCAGGTGGCAGC  150

seq1  AGATGCTGGCAAGCATGTGGAGAAAGAGGAACACTACTCCAATATTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGCAAGCATGTGGAGAAAGAGGAACACTACTCCAATATTGGTG  200

seq1  GCATTACAAGCTGGTACAACCACTCTGTAAATCAGTCTGATGGTTTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACAAGCTGGTACAACCACTCTGTAAATCAGTCTGATGGTTTCACA  250

seq1  GAAAATTGGACATAGTAGTACCTGGGAACCCAGCTATACCTCTCCTGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGGACATAGTAGTACCTGGGAACCCAGCTATACCTCTCCTGGCC  300

seq1  ATATTCTCAACTGATGCCCCAACATTTTATAAGAGTATATCTGTTCATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCAACTGATGCCCCAACATTTTATAAGAGTATATCTGTTCATAG  350

seq1  TAGTCTTCTCTATAATATCCAGAAGCTAGAAACCAATGTACTTTTTACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTCTCTATAATATCCAGAAGCTAGAAACCAATGTACTTTTTACTC  400

seq1  ATTTACTGAATAATATTTACTGATCACAATATATGCCTACATCATTACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGAATAATATTTACTGATCACAATATATGCCTACATCATTACAC  450

seq1  ACAAATAACTCAGCAGACAATTCAATTCTTTGTTAGTCCTTGCAGATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAACTCAGCAGACAATTCAATTCTTTGTTAGTCCTTGCAGATTAA  500

seq1  GGGCTCATACCTATATCATTGCCACTGCCTTTATGTCAATCACAGCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCATACCTATATCATTGCCACTGCCTTTATGTCAATCACAGCTCTA  550

seq1  CACTGTAGCCTAGTACCACCTTTAATCATTCAGTGACCTCAGCACAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGCCTAGTACCACCTTTAATCATTCAGTGACCTCAGCACAGATA  600

seq1  AATGTGGATTCATTTTTTTTCCACTGCAAAAGTCTCATTTTTATTAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGATTCATTTTTTTTCCACTGCAAAAGTCTCATTTTTATTAGTTT  650

seq1  TTTTTTTTTGCGATTTTCTTACAATGTATTTTGATCAAATGCCCCATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGCGATTTTCTTACAATGTATTTTGATCAAATGCCCCATTTT  700

seq1  TTCCCATCTTCCCAGATTCATCCCCCCTTCCCTACTCATCCAAATTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATCTTCCCAGATTCATCCCCCCTTCCCTACTCATCCAAATTTTTG  750

seq1  TAGATGTTAATTTTAACCCACCAAGTACATTATGTACTGATTGTATATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTTAATTTTAACCCACCAAGTACATTATGTACTGATTGTATATGC  800

seq1  TTGGACGTGAGTGCTTTACTGTTTTTTATATATTCATTTATTTTTTATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACGTGAGTGCTTTACTGTTTTTTATATATTCATTTATTTTTTATTA  850

seq1  GATGTTTTCCTTATTTACA-TTTCAAATGTTATCCCCTTTCCTAGTTTCC  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GATGTTTTCCTTATTTACATTTTCAAATGTTATCCCCTTTCCTAGTTTCC  900

seq1  CCTCTGAAAACCCTCTAATCCCTCCCCCTCCCCCTGCTCACCAACGCACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAAAACCCTCTAATCCCTCCCCCTCCCCCTGCTCACCAACGCACC  950

seq1  CATTCAGTCTTAGCCCTGGCATTCCCCT-ATACTGGGGCATAGAACCTTC  998
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CATTCAGTCTTAGCCCTGGCATTCCCCTAATACTGGGGCATAGAACCTTC  1000

seq1  ACAGGACCAAGTGCCTCTCCTCCCATTGATAACCAACTAGGCCATCCTCT  1048
      |||||||||||||||||||||||||||||||  | |||||||||||||||
seq2  ACAGGACCAAGTGCCTCTCCTCCCATTGATA--CCACTAGGCCATCCTCT  1048

seq1  GCTAC-ATATGCAGCTAGAACCATGAGTCCCACCATTTGTTTTCATTGGT  1097
      ||||| ||||||||||||||||||||||||||||||||| ||||||  ||
seq2  GCTACAATATGCAGCTAGAACCATGAGTCCCACCATTTG-TTTCAT--GT  1095

seq1  TGGTGGTTTAGTCCCAAGGAGCTCTGGGGGTTCTGGATAGTTCATATTGT  1147
      |||||  ||||| || | ||||||||||||||||| |||| ||||| |||
seq2  TGGTG--TTAGTTCCCA-GAGCTCTGGGGGTTCTGAATAGGTCATA-TGT  1141

seq1  TGGTCCACCTATGGGG-CTGCAAATCCCTTAACTTCCT  1184
        |||||||||||||| |||||     |||||||||||
seq2  --GTCCACCTATGGGGCCTGCA----TCTTAACTTCCT  1173


seq1: chr9_5508996_5510140
seq2: B6Ng01-336P18.g_68_1197 (reverse)

seq1  GGATAGCATTGGAAATGTAATTGAGGAAAATACATAATAAATAAATATAT  50
      |||| ||||| ||||||||||||||||||  | || ||   || |||   
seq2  GGAT-GCATT-GAAATGTAATTGAGGAAATCATATTAT---TAGATAGTA  45

seq1  ATATATATATATATATAAATAAAAAATAAAAAATGTTTGGGGGAATCACC  100
      ||||   ||||| |||||  | ||||| |||||||  | |||||||||||
seq2  ATAT---TATAT-TATAATAATAAAATTAAAAATG--TAGGGGAATCACC  89

seq1  ATACCTTACCTCAAGCTGTACTACAGAGCAATTGTGATAAAAACAACTAC  150
      ||||| |  ||| |||||||||||||||| ||||||||||||   |||||
seq2  ATACCCTTACTC-AGCTGTACTACAGAGC-ATTGTGATAAAA--CACTAC  135

seq1  AAT-AAAAACAAAACTATGTGCTATTAGTACAGTGCCAGGCTGACTCTTG  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAACAAAACTATGTGCTATTAGTACAGTGCCAGGCTGACTCTTG  185

seq1  CTGTTTCCACAGACTTGTGCCAATTGGAAATAATCTCTCTGTTTCTTCTG  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCACAGAC-TGTGCCAATTGGAAATAATCTCTCTGTTTCTTCTG  234

seq1  GATCTAGTGACTGTTAGTGATGCATGTTTGGTGTTTGCCAATTGAACTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGTGACTGTTAGTGATGCATGTTTGGTGTTTGCCAATTGAACTAA  284

seq1  TCCCTGTTTGAAATTGCCCCAAAGTTCTACTTCTAAACAGGTCTACACCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTTGAAATTGCCCCAAAGTTCTACTTCTAAACAGGTCTACACCC  334

seq1  TATTTTCTATTAACCTTTTTTCTCCACTACCTTCAGTTCATGGGCTAGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTATTAACCTTTTTTCTCCACTACCTTCAGTTCATGGGCTAGGA  384

seq1  GGGTGGTTAAAGTATTTAAGAACCCTTATTAAAATATAAGCCTACAGTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTTAAAGTATTTAAGAACCCTTATTAAAATATAAGCCTACAGTGC  434

seq1  TATTTTGATGTAGATTAAATAATTTCTGTGTATAAAGTTTTATAATGAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGATGTAGATTAAATAATTTCTGTGTATAAAGTTTTATAATGAAC  484

seq1  CACCAATTATATGTTGTTTATTGATCTGCTCTTATGATATCTTCTTTGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATTATATGTTGTTTATTGATCTGCTCTTATGATATCTTCTTTGAC  534

seq1  CCTCTACAAATTTTAGACTTAGCTTTTGTCCTATCAAAGAGATAAAACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACAAATTTTAGACTTAGCTTTTGTCCTATCAAAGAGATAAAACTG  584

seq1  CTACAATTTTTAATTGGAATCAAATTAAATATACGGAAAAACTTTTAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATTTTTAATTGGAATCAAATTAAATATACGGAAAAACTTTTAAAA  634

seq1  AGCTGACATCTATATAATATAATTCTATTATTTCAGAGTTCTCTAAAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACATCTATATAATATAATTCTATTATTTCAGAGTTCTCTAAAACA  684

seq1  TTACTAGAAATAAAACTCCCTTTAAAGTTTTGAAATATCTATTTCTTTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGAAATAAAACTCCCTTTAAAGTTTTGAAATATCTATTTCTTTAT  734

seq1  ATAACTTTGATGTAATTAAAATAAGATAAATTCTTGTTTACTGTTTCCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTGATGTAATTAAAATAAGATAAATTCTTGTTTACTGTTTCCAA  784

seq1  GTTAAATATTATTTGTAGTATTTACTTACATATTAGTCTAAATGTTTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATATTATTTGTAGTATTTACTTACATATTAGTCTAAATGTTTCTA  834

seq1  CAAATGCCCCAAGTGATATTAAAACATTATTAGAAAAGAACAGTGAAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCCCCAAGTGATATTAAAACATTATTAGAAAAGAACAGTGAAAGA  884

seq1  ATCTAATAAATGTAGATGTAAATATCTTGAATAAATCCAACAAAATGATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATAAATGTAGATGTAAATATCTTGAATAAATCCAACAAAATGATG  934

seq1  CAAAACACTTCACTTTATCTTCATCTGGAAACTTGGGCCTCCTATACTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACTTCACTTTATCTTCATCTGGAAACTTGGGCCTCCTATACTGT  984

seq1  CTATAGCTCTGTTTTCAAGAATGTTAAAAACAAAGGAGATAGAAGTTGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCTCTGTTTTCAAGAATGTTAAAAACAAAGGAGATAGAAGTTGGT  1034

seq1  CCATCTCTTAAACCTATATCTGGGAAACATTTCCACATTGTTCCATTGGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTTAAACCTATATCTGGGAAACATTTCCACATTGTTCCATTGGA  1084

seq1  CATGGACTCCTAACCCTTTATAGGACCCCAAAAGTTGAAGGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACTCCTAACCCTTTATAGGACCCCAAAAGTTGAAGGAATTC  1130


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