BAC Information

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BAC

Clone NameB6Ng01-337B11
Chromosome9 (Build37)
Map Location 17,014,306 - 17,112,730
singlet/doubletdoublet
Overlap genenone
Upstream geneFat3, EG434373, LOC100040074
Downstream geneLOC100040090, LOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337B11.bB6Ng01-337B11.g
ACCGA121820GA121821
length3901,119
definitionB6Ng01-337B11.b B6Ng01-337B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,112,335 - 17,112,730)(17,014,306 - 17,015,449)
sequence
aagtgttaatttgtctcatattgctttatttgtgcataatttgagctcac
tgatcatctttttctactgtggtttctgattttgtgatttattataggct
ttatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgt
gtagatttcttgttttctgtttggttatttcactttaattgtaaaagaat
ttgggatataaaagggaaggaaaaccctgattaaaatatattgtatgaga
aaattattttccgatacaaaatgaaatgaaatgaaataaaagttacttga
taacatatcgagtgttccaatagcatttacataccctgtgtatagttgcc
ttgaagagttcaaagtctgatactttatttctgataagat
gaattcaataaatagtgatctgaaggctactttgagaatataagataaag
tctgctgcaagaagaaaaactatataaaagatgaaacattgattaaaaat
ggcaatcaagttttctcaagagaggaaaaaatctcacccattcattcagg
atctaggacctgtatcagacactgaagcaagcatatcacgaacagtattt
catgttatcctgacagtgctctgaaggaagggtatttatgaagtcttgct
cgtgtccagagtttctgttgttattggtaggacttttaacttttgtctga
gaggccattgtcacttgttggtagtttttagcagcagaaatgaaatcagg
ggccagagacacttttttctttcagtaaacatattctaaatgagaagact
gagtcagtcagagccaggctgactccatgacaggctgcaaaccgacaggt
caggagactagacttaagtttctgtttcccagaactagagaagaaaaaaa
catgttagttccagaaaaacccatcttcatgggcagctaatcaggaagcc
actccaccacctatgctgagccaacttcatgggcagccaataaggagctg
taaaagttgctccagcacctatgtatagtcatgcaataaaatatatgtat
ggcactgtgtccacaagtggatccaattgaggaaaccaaagtctgatgcc
gaagctgtgtctcatgatgacccttagcccacaaaccttaaaacttcagt
aggattattgcccctatgttagaaagtgagatgcaaactcttttatagtt
gcctcacatatgtattaaggaaggatccatattctcagaaaatacttgat
atcattattatgacaaccccttgtgggggttgtccatctcataaatattc
ataaaacttattcaaaatccccgcacaggggcccaatgtgctgtggtcca
gcacattccagtctctctagattttcgttgttgcagactctgctgatact
acgttgctctaggatatcttctgttttagttaagtatagaagatacccca
cagtattatattatatgtatcatatcttgctgatagatatttcatagtct
ctctataagagtagggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17112335_17112730
seq2: B6Ng01-337B11.b_47_442 (reverse)

seq1  ATCTTCTCAGAAATAAAGTATCAGACTTTGAACTCTTCAAGGCAACTATA  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATCAGAAATAAAGTATCAGACTTTGAACTCTTCAAGGCAACTATA  50

seq1  CACAGGGTATTTAAATGCTATTGGAACACTCGATATGTTATCAAGTAACT  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGTATGTAAATGCTATTGGAACACTCGATATGTTATCAAGTAACT  100

seq1  TTTATTTCATTTCATTTCATTTTCTATCTGAAAATAATTTTCTCATACAA  150
      ||||||||||||||||||||||| |||| |||||||||||||||||||||
seq2  TTTATTTCATTTCATTTCATTTTGTATCGGAAAATAATTTTCTCATACAA  150

seq1  TATATTTTAATCAGGGTTTTCCTTCCCTTCTATATCCCAAATTCTTTTAC  200
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATATTTTAATCAGGGTTTTCCTTCCCTTTTATATCCCAAATTCTTTTAC  200

seq1  AATTAAAGTGAAATAACCAAACAGAAAACAAGAAATCTACACATGCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGTGAAATAACCAAACAGAAAACAAGAAATCTACACATGCACAC  250

seq1  ACACACACACACACACACACACACACACACACACAAATAAAGCCTATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACAAATAAAGCCTATAAT  300

seq1  AAATCACAAAATCAGAAACCACAGTAGAAAAAGATGATCAGTGAGCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACAAAATCAGAAACCACAGTAGAAAAAGATGATCAGTGAGCTCAA  350

seq1  ATTATGCACAAATAAAGCAATATGAGACAAATTAACACTTGAATTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCACAAATAAAGCAATATGAGACAAATTAACACTTGAATTC  396

seq1: chr9_17014306_17015449
seq2: B6Ng01-337B11.g_67_1185

seq1  GAATTCAATAAATAGTGATCTGAAGGCTACTTTGAGAATATAAGATAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAATAGTGATCTGAAGGCTACTTTGAGAATATAAGATAAAG  50

seq1  TCTGCTGCAAGAAGAAAAACTATATAAAAGATGAAACATTGATTAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCAAGAAGAAAAACTATATAAAAGATGAAACATTGATTAAAAAT  100

seq1  GGCAATCAAGTTTTCTCAAGAGAGGAAAAAATCTCACCCATTCATTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCAAGTTTTCTCAAGAGAGGAAAAAATCTCACCCATTCATTCAGG  150

seq1  ATCTAGGACCTGTATCAGACACTGAAGCAAGCATATCACGAACAGTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGACCTGTATCAGACACTGAAGCAAGCATATCACGAACAGTATTT  200

seq1  CATGTTATCCTGACAGTGCTCTGAAGGAAGGGTATTTATGAAGTCTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATCCTGACAGTGCTCTGAAGGAAGGGTATTTATGAAGTCTTGCT  250

seq1  CGTGTCCAGAGTTTCTGTTGTTATTGGTAGGACTTTTAACTTTTGTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCCAGAGTTTCTGTTGTTATTGGTAGGACTTTTAACTTTTGTCTGA  300

seq1  GAGGCCATTGTCACTTGTTGGTAGTTTTTAGCAGCAGAAATGAAATCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCATTGTCACTTGTTGGTAGTTTTTAGCAGCAGAAATGAAATCAGG  350

seq1  GGCCAGAGACACTTTTTTCTTTCAGTAAACATATTCTAAATGAGAAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGACACTTTTTTCTTTCAGTAAACATATTCTAAATGAGAAGACT  400

seq1  GAGTCAGTCAGAGCCAGGCTGACTCCATGACAGGCTGCAAACCGACAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGTCAGAGCCAGGCTGACTCCATGACAGGCTGCAAACCGACAGGT  450

seq1  CAGGAGACTAGACTTAAGTTTCTGTTTCCCAGAACTAGAGAAGAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGACTAGACTTAAGTTTCTGTTTCCCAGAACTAGAGAAGAAAAAAA  500

seq1  CATGTTAGTTCCAGAAAAACCCATCTTCATGGGCAGCTAATCAGGAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTAGTTCCAGAAAAACCCATCTTCATGGGCAGCTAATCAGGAAGCC  550

seq1  ACTCCACCACCTATGCTGAGCCAACTTCATGGGCAGCCAATAAGGAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACCACCTATGCTGAGCCAACTTCATGGGCAGCCAATAAGGAGCTG  600

seq1  TAAAAGTTGCTCCAGCACCTATGTATAGTCATGCAATAAAATATATGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTGCTCCAGCACCTATGTATAGTCATGCAATAAAATATATGTAT  650

seq1  GGCACTGTGTCCACAAGTGGATCCAATTGAGGAAACCAAAGTCTGATGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGTGTCCACAAGTGGATCCAATTGAGGAAACCAAAGTCTGATGCC  700

seq1  GAAGCTGTGTCTCATGATGACCCTTAGCCCACAAACCTTAAAACTTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGTGTCTCATGATGACCCTTAGCCCACAAACCTTAAAACTTCAGT  750

seq1  AGGATTATTGCCCCTATGTTAGAAAGTGAGATGCAAACTCTTTTATAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTATTGCCCCTATGTTAGAAAGTGAGATGCAAACTCTTTTATAGTT  800

seq1  GCCTCACATATGTATTAAGGAAGGATCCATATTCTCAGAAAATACTTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACATATGTATTAAGGAAGGATCCATATTCTCAGAAAATACTTGAT  850

seq1  ATCATTATTATGACAACCCCTTGTGGGGGTTGTCCATCTCATAAATATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATTATGACAACCCCTTGTGGGGGTTGTCCATCTCATAAATATTC  900

seq1  ATAAAACTTATTCAAAATCCCCGCACA-GGGCCCAATGTGCTGTGGTCCA  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATAAAACTTATTCAAAATCCCCGCACAGGGGCCCAATGTGCTGTGGTCCA  950

seq1  GCACATTCCAGTCTCTCTAGAATTTTCGTTTGTTTGCAGAACTTCTGCTG  999
      |||||||||||||||||||| |||||||||   |||||||   |||||||
seq2  GCACATTCCAGTCTCTCTAG-ATTTTCGTT--GTTGCAGA--CTCTGCTG  995

seq1  ATACTACCGTTGCCTCTAGGATATCTTCTGTTTTAAGTAAAGTAATAAGA  1049
      |||||| ||||| ||||||||||||||||||||| ||| |||| |||  |
seq2  ATACTA-CGTTG-CTCTAGGATATCTTCTGTTTT-AGTTAAGT-ATAGAA  1041

seq1  GATACCCCAACAGGTATTATAATTATATTGTTATCATAATCTTTGCTGAA  1099
      |||||||| ||| ||||||| |||||||   |||||| ||| |||||| |
seq2  GATACCCC-ACA-GTATTAT-ATTATAT--GTATCAT-ATC-TTGCTG-A  1083

seq1  TAGTATATTTCATATAGTGTCTTCTCCTATTAAAGAGTAGGGAGA  1144
      ||| |||||||  ||||| |||    ||||  |||||||||||||
seq2  TAG-ATATTTC--ATAGTCTCT----CTAT--AAGAGTAGGGAGA  1119