BAC Information

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BAC

Clone NameB6Ng01-338F23
Chromosome9 (Build37)
Map Location 93,906,220 - 94,049,189
singlet/doubletdoublet
Overlap geneLOC384967
Upstream geneLOC674371
Downstream geneEG384968, 1190002N15Rik, EG667601, Slc9a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338F23.bB6Ng01-338F23.g
ACCGA122699GA122700
length1,1291,091
definitionB6Ng01-338F23.b B6Ng01-338F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,048,070 - 94,049,189)(93,906,220 - 93,907,314)
sequence
gaattctctttgtttaatatctattcttttaatttaatcttttatattcc
ctaggatagatacttagattggcttcaaatctatcttcctttttaaaata
ggtaaatagtgttactagacttctgcttcagctacaggccagtaattatt
tatattcatgattccttaggttaaaaattttcctgtttttgttttaattg
gtacaattttacagtatattatttgattgaattatggatcagtcttttat
gtgtcaaggctgtttaatttcacttttttggtcaaagaaatagccaacct
ttctaattcttgacatttgttgtattttgcacagtgtctaaagaagcagg
ggaggcattaagcaggtacactgaagagagatttgattctgcagtgacaa
tccaccatgtcaactgtttccagtcttctatgatgccactactgtcatta
ttattaactgcagttttgtaatgtccatctgagtattatgattttgttgg
atttgtacgtccctctctttagttttgctacatttttttttaaattaagg
aacatatgaagctgtatttccatgtgcatctatttgaatgctattttaaa
taatattataaatttactatttgtgttaaattatctactagttttgatat
tatttccttttggaatactagaatttctaaaactagactggctttctttc
ctggaaaagaaatggtctataactttggcaattttaccttcagtgtatcc
atggttttgcgtcaaccatggagcattttacttgcctgtcaacagaaaag
atttgcatttacattttgggtagatttaagcctctctaattattgacatg
acacacgtgaatcgatagttttgttataggattttttttttttggcttta
cttgtttgaagtttttctttctatttcatttaaatatttttgcgttagta
ggtatgggtacacatttgttccatgttagtgtgtgcaagtgcttatgttt
tagatcaatgcataatacataaatgtgcacatgtatggtgaaagccccgg
gaccaggaacctttagcctgtaatcttctgttgcctgtagccttggtttt
tgtgacaacaggtttatcatgaacctgag

gaattcaataagactagatgacaaaagcaagacagcctgaagagagggat
ctatggagtaaggaatgacataaatgaatggaaacagggcctatgctcca
acactgaaggaaggtttttaaattaaaatttactctctaatctaataagg
cttcagctggaacttcaacaagatctctttgtatcttgacattgtttcgc
attttatgtgaaagacagactctagtaggattttataaaaaaaaataagt
agtaaagaatgttgatagttgaggaatgagcataaatatcagctggcata
aaagcagcaaaagagaaggaaagatctagaaatgggacctaccctaagca
gaaagattgcaataaaatcatttaagcaagccctaagtttcaaaaaaaaa
aggaaattgttaccacgggaaattcatttaaatcaaacagttaaacccct
atcacacattatatttaattaagaaaaggaattatcaaaagagttcaaac
tcattgaactttttattaatttatctgtgtcaacaggaaaatatttatta
tgagggatggaaatagtcaatgcaaaatctcatgtctacttcaagtaaag
gttaatgatagaaaggagattctttcactttaatcagggtcatatgttta
cactaagtagtaatgatttgaaggttagcaaaactactataacaagattg
gagataaaggcactgggaaggtcaatctgtctcaagaaaatggaatgctc
attttggagaagacagaatggtatttactgaggatgaatgcttttgaaag
aaatttgtatgacacactgatgcccagagtgatggatttgtcttctttag
tagagagaagctcaagcaatcagaaatgttctttcctggtagagagagga
aggagcagaattggggctgtgctagtcgccctgctaatcctgaaggttca
actgggagagtcatagccatggaagggaactctggggcagaagacaatct
ggaggaacaaggtccactggagattctgaaatctgatgttaacattgttg
acttgggagtctccactgccctttcttccgtgtgactgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_94048070_94049189
seq2: B6Ng01-338F23.b_44_1172 (reverse)

seq1  CTCAG--TCATG-TAAACC---TGTCTCAAAAACAAGGGCTACA-GCAAC  43
      |||||  ||||| ||||||   |||| ||||||| | ||||||| |||||
seq2  CTCAGGTTCATGATAAACCTGTTGTCACAAAAACCAAGGCTACAGGCAAC  50

seq1  AGAAGAATAACAGCTAAGGGTCCCTTGTCCCGTGGC-TTCAACATACATG  92
      |||||| ||   ||||| ||| ||| |||||| ||| |||| ||||||||
seq2  AGAAGATTACAGGCTAAAGGTTCCTGGTCCCGGGGCTTTCACCATACATG  100

seq1  TGCACAATTTATGTA-TATGCATTGATCT-AAACATAGGCACTTGCACAC  140
      ||||| ||||||||| ||||||||||||| ||||||| ||||||||||||
seq2  TGCAC-ATTTATGTATTATGCATTGATCTAAAACATAAGCACTTGCACAC  149

seq1  ACTAACAT-GAACAAATGTGTACCCATACCTACTAACGCAAAAATATTTT  189
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  ACTAACATGGAACAAATGTGTACCCATACCTACTAACGCAAAAATA-TTT  198

seq1  AAATGAAATAGAAAGAAAAACTTCAAACAAGTAAAGCCAAAAAAAAAAAA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATAGAAAGAAAAACTTCAAACAAGTAAAGCCAAAAAAAAAAAA  248

seq1  TCCTATAACAAAACTATCGATTCACGTGTGTCATGTCAATAATTAGAGAG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATAACAAAACTATCGATTCACGTGTGTCATGTCAATAATTAGAGAG  298

seq1  GCTTAAATCTACCCAAAATGTAAATGCAAATCTTTTCTGTTGACAGGCAA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAATCTACCCAAAATGTAAATGCAAATCTTTTCTGTTGACAGGCAA  348

seq1  GTAAAATGCTCCATGGTTGACGCAAAACCATGGATACACTGAAGGTAAAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGCTCCATGGTTGACGCAAAACCATGGATACACTGAAGGTAAAA  398

seq1  TTGCCAAAGTTATAGACCATTTCTTTTCCAGGAAAGAAAGCCAGTCTAGT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAAGTTATAGACCATTTCTTTTCCAGGAAAGAAAGCCAGTCTAGT  448

seq1  TTTAGAAATTCTAGTATTCCAAAAGGAAATAATATCAAAACTAGTAGATA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAATTCTAGTATTCCAAAAGGAAATAATATCAAAACTAGTAGATA  498

seq1  ATTTAACACAAATAGTAAATTTATAATATTATTTAAAATAGCATTCAAAT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACACAAATAGTAAATTTATAATATTATTTAAAATAGCATTCAAAT  548

seq1  AGATGCACATGGAAATACAGCTTCATATGTTCCTTAATTTAAAAAAAAAT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCACATGGAAATACAGCTTCATATGTTCCTTAATTTAAAAAAAAAT  598

seq1  GTAGCAAAACTAAAGAGAGGGACGTACAAATCCAACAAAATCATAATACT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAAACTAAAGAGAGGGACGTACAAATCCAACAAAATCATAATACT  648

seq1  CAGATGGACATTACAAAACTGCAGTTAATAATAATGACAGTAGTGGCATC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGACATTACAAAACTGCAGTTAATAATAATGACAGTAGTGGCATC  698

seq1  ATAGAAGACTGGAAACAGTTGACATGGTGGATTGTCACTGCAGAATCAAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGACTGGAAACAGTTGACATGGTGGATTGTCACTGCAGAATCAAA  748

seq1  TCTCTCTTCAGTGTACCTGCTTAATGCCTCCCCTGCTTCTTTAGACACTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTCAGTGTACCTGCTTAATGCCTCCCCTGCTTCTTTAGACACTG  798

seq1  TGCAAAATACAACAAATGTCAAGAATTAGAAAGGTTGGCTATTTCTTTGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATACAACAAATGTCAAGAATTAGAAAGGTTGGCTATTTCTTTGA  848

seq1  CCAAAAAAGTGAAATTAAACAGCCTTGACACATAAAAGACTGATCCATAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAGTGAAATTAAACAGCCTTGACACATAAAAGACTGATCCATAA  898

seq1  TTCAATCAAATAATATACTGTAAAATTGTACCAATTAAAACAAAAACAGG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCAAATAATATACTGTAAAATTGTACCAATTAAAACAAAAACAGG  948

seq1  AAAATTTTTAACCTAAGGAATCATGAATATAAATAATTACTGGCCTGTAG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTTAACCTAAGGAATCATGAATATAAATAATTACTGGCCTGTAG  998

seq1  CTGAAGCAGAAGTCTAGTAACACTATTTACCTATTTTAAAAAGGAAGATA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCAGAAGTCTAGTAACACTATTTACCTATTTTAAAAAGGAAGATA  1048

seq1  GATTTGAAGCCAATCTAAGTATCTATCCTAGGGAATATAAAAGATTAAAT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAAGCCAATCTAAGTATCTATCCTAGGGAATATAAAAGATTAAAT  1098

seq1  TAAAAGAATAGATATTAAACAAAGAGAATTC  1120
      |||||||||||||||||||||||||||||||
seq2  TAAAAGAATAGATATTAAACAAAGAGAATTC  1129


seq1: chr9_93906220_93907314
seq2: B6Ng01-338F23.g_68_1158

seq1  GAATTCAATAAGACTAGATGACAAAAGCAAGACAGCCTGAAGAGAGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAGACTAGATGACAAAAGCAAGACAGCCTGAAGAGAGGGAT  50

seq1  CTATGGAGTAAGGAATGACATAAATGAATGGAAACAGGGCCTATGCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAGTAAGGAATGACATAAATGAATGGAAACAGGGCCTATGCTCCA  100

seq1  ACACTGAAGGAAGGTTTTTAAATTAAAATTTACTCTCTAATCTAATAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAGGAAGGTTTTTAAATTAAAATTTACTCTCTAATCTAATAAGG  150

seq1  CTTCAGCTGGAACTTCAACAAGATCTCTTTGTATCTTGACATTGTTTCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTGGAACTTCAACAAGATCTCTTTGTATCTTGACATTGTTTCGC  200

seq1  ATTTTATGTGAAAGACAGACTCTAGTAGGATTTTATAAAAAAAAATAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGTGAAAGACAGACTCTAGTAGGATTTTATAAAAAAAAATAAGT  250

seq1  AGTAAAGAATGTTGATAGTTGAGGAATGAGCATAAATATCAGCTGGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAATGTTGATAGTTGAGGAATGAGCATAAATATCAGCTGGCATA  300

seq1  AAAGCAGCAAAAGAGAAGGAAAGATCTAGAAATGGGACCTACCCTAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCAAAAGAGAAGGAAAGATCTAGAAATGGGACCTACCCTAAGCA  350

seq1  GAAAGATTGCAATAAAATCATTTAAGCAAGCCCTAAGTTTCAAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATTGCAATAAAATCATTTAAGCAAGCCCTAAGTTTCAAAAAAAAA  400

seq1  AGGAAATTGTTACCACGGGAAATTCATTTAAATCAAACAGTTAAACCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTGTTACCACGGGAAATTCATTTAAATCAAACAGTTAAACCCCT  450

seq1  ATCACACATTATATTTAATTAAGAAAAGGAATTATCAAAAGAGTTCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACATTATATTTAATTAAGAAAAGGAATTATCAAAAGAGTTCAAAC  500

seq1  TCATTGAACTTTTTATTAATTTATCTGTGTCAACAGGAAAATATTTATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAACTTTTTATTAATTTATCTGTGTCAACAGGAAAATATTTATTA  550

seq1  TGAGGGATGGAAATAGTCAATGCAAAATCTCATGTCTACTTCAAGTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGATGGAAATAGTCAATGCAAAATCTCATGTCTACTTCAAGTAAAG  600

seq1  GTTAATGATAGAAAGGAGATTCTTTCACTTTAATCAGGGTCATATGTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGATAGAAAGGAGATTCTTTCACTTTAATCAGGGTCATATGTTTA  650

seq1  CACTAAGTAGTAATGATTTGAAGGTTAGCAAAACTACTATAACAAGATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGTAGTAATGATTTGAAGGTTAGCAAAACTACTATAACAAGATTG  700

seq1  GAGATAAAGGCACTGGGAAGGTCAATCTGTCTCAAGAAAATGGAATGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAAGGCACTGGGAAGGTCAATCTGTCTCAAGAAAATGGAATGCTC  750

seq1  ATTTTGGAGAAGACAGAATGGTATTTACTGAGGATGAATGCTTTTGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGAGAAGACAGAATGGTATTTACTGAGGATGAATGCTTTTGAAAG  800

seq1  AAATTTGTATGACACACTGATGCCCAGAGTGATGGATTTGTCTTCTTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTATGACACACTGATGCCCAGAGTGATGGATTTGTCTTCTTTAG  850

seq1  TAGAGAGAAGCTCAAGCAATCAGAAATGTTTCTTTCCTGGTAGAGAGAGG  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAGAGAGAAGCTCAAGCAATCAGAAATG-TTCTTTCCTGGTAGAGAGAGG  899

seq1  AAGGAGCAGAATTGGGGCTGTGCTAGTCGCCCTGCTAATCCTGAAGGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCAGAATTGGGGCTGTGCTAGTCGCCCTGCTAATCCTGAAGGTTC  949

seq1  AACTGGGAGAGTCATAGCCATGGAGGGGAACTCCTGGGGCAGAAGACAAT  1000
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  AACTGGGAGAGTCATAGCCATGGAAGGGAACT-CTGGGGCAGAAGACAAT  998

seq1  CTTGGAGGAACAAGGTCCACT-GAGATTCTTGAAATCTTGATGTTAACAT  1049
      | ||||||||||||||||||| ||||||| ||||||| ||||||||||||
seq2  C-TGGAGGAACAAGGTCCACTGGAGATTC-TGAAATC-TGATGTTAACAT  1045

seq1  TGTTGACTTGGGAGTCTCCACTGCCCCCTTCTTCC-TGTGACTGTGA  1095
      ||||||||||||||||||||||| ||| ||||||| |||||||||||
seq2  TGTTGACTTGGGAGTCTCCACTG-CCCTTTCTTCCGTGTGACTGTGA  1091


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