BAC Information

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BAC

Clone NameB6Ng01-338I06
Chromosome9 (Build37)
Map Location 92,063,721 - 92,243,095
singlet/doubletdoublet
Overlap geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850
Upstream geneLOC621576, Zic1, Zic4
Downstream genePlscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338I06.bB6Ng01-338I06.g
ACCGA122794GA122795
length1,1461,013
definitionB6Ng01-338I06.b B6Ng01-338I06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,063,721 - 92,064,663)(92,242,102 - 92,243,095)
sequence
gaattctttgtttagctctgtatcccattttttaattggattatttagtt
ttttggcatatttttgagttctttatacattttggatattagcactttat
tgggtgtagggttggtaaagatcattccattccttaggctgccattttgt
tctatagcttgtgtcatttgcctttcagaagcttgtcagtttcagaagat
cccatttatcaattgttgctcttagagcctgaatcattggtgttctgttc
aggaaatcttctgtgccaatgtatttgatactatttctctctttttcttc
tagtagattcagtgtatctggttttatgttgaggtctttgatcaagttgg
acttgaactttgtgcagagtgataagtatgactcaatttgcattcttcta
catgcataccatcagttagaccagcaccatttgttgaagatgctttcttt
ttttccactctatggttttcacttctttgtcaaagatcaagtgtccatag
gtgtgtgggtttatttctgtatcttcaattctattccattgatcgacctg
tctgtcactataccaatatcatgcagttttcatcactatttctctgtagt
acaccttgaggtcagtgatggtgatttctctagaagttcttttcttgttg
agaattgtttttgctctcctgggttattttgtttttccatataaagttga
gaattctgtacacagtgcctctatatgaacctctggcagagaaggtaaag
caagaatttagctgataaatgagtagttccatatttccatgtaaattgat
gataaagaatgaataactacaatgagggctcattcttcaggggtcttgaa
aagaggtgaattctcccctgtggaattagttcatctacttttgtagatga
attatccagaaggaaactatgtgcagacttgatggtaggtagagtaagga
cactaaaattgaaaggatttaaagacagtataaaccaactcacagttcta
gttatatgagtatagagatttgtgtatttttaaataaatttaaatcactt
gaaactatgccattctagaaagagttctggcaactaaaaaggccaccaat
aaggcagtggacattagactatgggtctttcttggcatctctccat

gaattccatctcagttccaaagaaccattcactgcaacctgaaccactgc
ctgaggttctgtggaagtctcacactggtcatagcttgggagaaagcaac
taagaaacctgttaggatgtggtaaaacatccagtgaattgcagatatgg
gaagaaagttaagttttaggtactatatttcaaattggtgtctatgacgg
gaacagctggctatcataatatttactaagaggtccctaagtggcagaaa
taaaaatccagataaaactacttgtttaaagactatgaggaaagacattg
taagagatcaagttttccatcctgcatcatccagaacgcagtatttgtgg
tgttcatcatgtctttactcttgttggctttctagaaatatgatggatac
ggcaaatacccaccttccacaaactcaaactgctgttgaatcataatatg
atctatctgtcacagtgaaaagaaaataaagaatttcagatatttcactc
aaccaaattaggaattcataattttcattatttaatatgatttataaata
gttaccagtgtttatcagtatcagattctcataattgtttgttgaataaa
atcatattaagagcagggagggggagggtataggggcctttgggaatagc
atttgaaatgtaaatgaagaaaatatctaataagaaaagaaaaaagaaaa
gaaaaagaaaaaatcattaacagcttttttcatttaaaatatatctactg
aatgaatttactgtaaatgtggggaaaacaaggtcagtttggcttaatct
tagatatatagagagaaatagaaagcaaagctctttgctatatgattttt
aagaaatgtgaaaaatattttgtattcatttaaagaggctttttgtgttg
tctgaaaaatgatacttgatgtcactgttttgtggtaacctgaggacttc
tatgcatctcatggattcctgggcttttactgtggtagttttgccggtta
tgtattggttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92063721_92064663
seq2: B6Ng01-338I06.b_253_1190

seq1  TCAATTGTTGCTCTTAGAGCCTGAATCATTGGTGTTCTGTTCAGGAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGTTGCTCTTAGAGCCTGAATCATTGGTGTTCTGTTCAGGAAATC  50

seq1  TTCTGTGCCAATGTATTTGATACTATTTCTCTCTTTTTCTTCTAGTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGCCAATGTATTTGATACTATTTCTCTCTTTTTCTTCTAGTAGAT  100

seq1  TCAGTGTATCTGGTTTTATGTTGAGGTCTTTGATCAAGTTGGACTTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTATCTGGTTTTATGTTGAGGTCTTTGATCAAGTTGGACTTGAAC  150

seq1  TTTGTGCAGAGTGATAAGTATGACTCAATTTGCATTCTTCTACATGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCAGAGTGATAAGTATGACTCAATTTGCATTCTTCTACATGCATA  200

seq1  CCATCAGTTAGACCAGCACCATTTGTTGAAGATGCTTTCTTTTTTTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGTTAGACCAGCACCATTTGTTGAAGATGCTTTCTTTTTTTCCAC  250

seq1  TCTATGGTTTTCACTTCTTTGTCAAAGATCAAGTGTCCATAGGTGTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGTTTTCACTTCTTTGTCAAAGATCAAGTGTCCATAGGTGTGTGG  300

seq1  GTTTATTTCTGTATCTTCAATTCTATTCCATTGATCGACCTGTCTGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTCTGTATCTTCAATTCTATTCCATTGATCGACCTGTCTGTCAC  350

seq1  TATACCAATATCATGCAGTTTTCATCACTATTTCTCTGTAGTACACCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAATATCATGCAGTTTTCATCACTATTTCTCTGTAGTACACCTTG  400

seq1  AGGTCAGTGATGGTGATTTCTCTAGAAGTTCTTTTCTTGTTGAGAATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGTGATGGTGATTTCTCTAGAAGTTCTTTTCTTGTTGAGAATTGT  450

seq1  TTTTGCTCTCCTGGGTTATTTTGTTTTTCCATATAAAGTTGAGAATTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTCTCCTGGGTTATTTTGTTTTTCCATATAAAGTTGAGAATTCTG  500

seq1  TACACAGTGCCTCTATATGAACCTCTGGCAGAGAAGGTAAAGCAAGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTGCCTCTATATGAACCTCTGGCAGAGAAGGTAAAGCAAGAATT  550

seq1  TAGCTGATAAATGAGTAGTTCCATATTTCCATGTAAATTGATGATAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATAAATGAGTAGTTCCATATTTCCATGTAAATTGATGATAAAGA  600

seq1  ATGAATAACTACAATGAGGGCTCATTCTTCAGGGGTCTTGAAAAGAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAACTACAATGAGGGCTCATTCTTCAGGGGTCTTGAAAAGAGGTG  650

seq1  AATTCTCCCCTGTGGAATTAGTTCATCTACTTTTGTAGATGAATTATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCCCCTGTGGAATTAGTTCATCTACTTTTGTAGATGAATTATCCA  700

seq1  GAAGGAAACTATGTGCAGACTTGATGGTAGGTAAGAGTAAGGACACTAAA  750
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAAGGAAACTATGTGCAGACTTGATGGTAGGT-AGAGTAAGGACACTAAA  749

seq1  ATTGAAAGAATTTAAAGACAAGTATAAAACCAACTCACAGTTCTAGTTAT  800
      |||||||| |||||||||| ||||| ||||||||||||||||||||||||
seq2  ATTGAAAGGATTTAAAGAC-AGTAT-AAACCAACTCACAGTTCTAGTTAT  797

seq1  ATGAAGTATAGAGAATTTGTGTATTTTTAAATAAATTTTAATATCCACTT  850
      ||| ||||||||| |||||||||||||||||||||||| |||   |||||
seq2  ATG-AGTATAGAG-ATTTGTGTATTTTTAAATAAATTTAAAT---CACTT  842

seq1  GAAACTATG-CATCCTAGAAAGAGTTCTGGGCAACTAAAAAGGCAAACAA  899
      ||||||||| ||| |||||||||||||| ||||||||||||||| | |||
seq2  GAAACTATGCCATTCTAGAAAGAGTTCT-GGCAACTAAAAAGGCCACCAA  891

seq1  TAA-GCAGTGAACATCAG--CATGTGTCTTCATTGGCATCTCTCCAT  943
      ||| |||||| |||| ||   ||| |||||  |||||||||||||||
seq2  TAAGGCAGTGGACATTAGACTATGGGTCTTTCTTGGCATCTCTCCAT  938


seq1: chr9_92242102_92243095
seq2: B6Ng01-338I06.g_65_1077 (reverse)

seq1  -----------CAAAACCAGCAAAAACTACCACAGTAAAAGCCCAGAAAT  39
                 || |||| || |||||||||||||||||||||||| |||
seq2  CAAAACCAATACATAACCGGC-AAAACTACCACAGTAAAAGCCCAGGAAT  49

seq1  -CATGAGATGCATAGAAGTCCTCA-GTTACCAC-AAACAGTGACATCAAG  86
       ||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  CCATGAGATGCATAGAAGTCCTCAGGTTACCACAAAACAGTGACATCAAG  99

seq1  TATCATTTTTCAGAC-ACACAAAAAGCCTCTTTAAATGAATAC-AAATA-  133
      ||||||||||||||| ||||||||||||||||||||||||||| ||||| 
seq2  TATCATTTTTCAGACAACACAAAAAGCCTCTTTAAATGAATACAAAATAT  149

seq1  TTTTCACATTTCTTAAAAATCATATAGC-AAGAGCTTTGCTTTCTA-TTC  181
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  TTTTCACATTTCTTAAAAATCATATAGCAAAGAGCTTTGCTTTCTATTTC  199

seq1  TCTCTATATATCTAAGATTAAGCCAAACTGACCTTG-TTTCCCCACATTT  230
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTCTATATATCTAAGATTAAGCCAAACTGACCTTGTTTTCCCCACATTT  249

seq1  ACAGTAAATTCATTCAGTAGATATATTTTAAATGAAAAAAGCTGTTAATG  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAATTCATTCAGTAGATATATTTTAAATGAAAAAAGCTGTTAATG  299

seq1  ATTTTTTCTTTTTCTTTTCTTTTTTCTTTTCTTATTAGATATTTTCTTCA  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCTTTTTCTTTTCTTTTTTCTTTTCTTATTAGATATTTTCTTCA  349

seq1  TTTACATTTCAAATGCTATTCCCAAAGGCCCCTATACCCTCCCCCTCCCT  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTCAAATGCTATTCCCAAAGGCCCCTATACCCTCCCCCTCCCT  399

seq1  GCTCTTAATATGATTTTATTCAACAAACAATTATGAGAATCTGATACTGA  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAATATGATTTTATTCAACAAACAATTATGAGAATCTGATACTGA  449

seq1  TAAACACTGGTAACTATTTATAAATCATATTAAATAATGAAAATTATGAA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACTGGTAACTATTTATAAATCATATTAAATAATGAAAATTATGAA  499

seq1  TTCCTAATTTGGTTGAGTGAAATATCTGAAATTCTTTATTTTCTTTTCAC  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAATTTGGTTGAGTGAAATATCTGAAATTCTTTATTTTCTTTTCAC  549

seq1  TGTGACAGATAGATCATATTATGATTCAACAGCAGTTTGAGTTTGTGGAA  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGATAGATCATATTATGATTCAACAGCAGTTTGAGTTTGTGGAA  599

seq1  GGTGGGTATTTGCCGTATCCATCATATTTCTAGAAAGCCAACAAGAGTAA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTATTTGCCGTATCCATCATATTTCTAGAAAGCCAACAAGAGTAA  649

seq1  AGACATGATGAACACCACAAATACTGCGTTCTGGATGATGCAGGATGGAA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGATGAACACCACAAATACTGCGTTCTGGATGATGCAGGATGGAA  699

seq1  AACTTGATCTCTTACAATGTCTTTCCTCATAGTCTTTAAACAAGTAGTTT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATCTCTTACAATGTCTTTCCTCATAGTCTTTAAACAAGTAGTTT  749

seq1  TATCTGGATTTTTATTTCTGCCACTTAGGGACCTCTTAGTAAATATTATG  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGATTTTTATTTCTGCCACTTAGGGACCTCTTAGTAAATATTATG  799

seq1  ATAGCCAGCTGTTCCCGTCATAGACACCAATTTGAAATATAGTACCTAAA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAGCTGTTCCCGTCATAGACACCAATTTGAAATATAGTACCTAAA  849

seq1  ACTTAACTTTCTTCCCATATCTGCAATTCACTGGATGTTTTACCACATCC  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACTTTCTTCCCATATCTGCAATTCACTGGATGTTTTACCACATCC  899

seq1  TAACAGGTTTCTTAGTTGCTTTCTCCCAAGCTATGACCAGTGTGAGACTT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGTTTCTTAGTTGCTTTCTCCCAAGCTATGACCAGTGTGAGACTT  949

seq1  CCACAGAACCTCAGGCAGTGGTTCAGGTTGCAGTGAATGGTTCTTTGGAA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAACCTCAGGCAGTGGTTCAGGTTGCAGTGAATGGTTCTTTGGAA  999

seq1  CTGAGATGGAATTC  994
      ||||||||||||||
seq2  CTGAGATGGAATTC  1013


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