BAC Information

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BAC

Clone NameB6Ng01-339D19
Chromosome9 (Build37)
Map Location 12,420,662 - 12,421,782
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039989, LOC622505
Downstream geneLOC100039680, LOC665285, LOC100039729, LOC100039758, Maml2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339D19.bB6Ng01-339D19.g
ACCGA123290GA123291
length1,1911,117
definitionB6Ng01-339D19.b B6Ng01-339D19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctatactccatttttaatggggttatttgaatt
tcgggagtccagtttcttgaactcttttagatattggatattagtcccct
atcagatttagaattgccaaaaatcctttcccaatctgttggtggccttt
ttgtcttattgacagtgtcttttgccttacagaagtcttacaattctatg
aagtcccatttgtcatttcttgatcttacagcacaagccattgctgttct
gtttaggaattttacccctgtgaccatatctttgaggattttcccacttt
ctcctctattaatttcaatatctcttgttttatgtggaggtctttgatcc
actttgacttaagctttgtgcaaggagattagaatggatcaattagcatt
cttctacatgataactgccagttgtgccagcaccatttgttgaaaatgct
gtctttttttccactggatggtttcagctcccttgtcaaagatcaagtga
acatacatgtgtggattcttttctgggtcttcagttttattccattgatc
tacctatctgtctctgtacctgttctatgcagtttttatcataatttctc
cgtagtacagcttaatgtcgggcacggtgattccatcagacgttctttta
ttgttcatagtagtttttgctctcctaggtttttttattattccagatga
atttgaaaattgccctttctatctcagtgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaggatagccatttt
tactatattaatactgccaattcatgagcatgggagatcttaccatcttc
tgaggtcttcttcaaattctttcttcagagacttgaagttcttatcatac
agatctttaaattccttagttagagtcatgccaaggtatttatattattt
gtgactattgtgaaagggtgttgtttccctaattcttctcagcctgttta
tccttgtgtagagaaagtcattgatttgtttgagttaatttttataatca
gtactgcaagtttaaggaatcttctgggtgaatttttcaagtcacttaat
atatactatcatatcatctttcaaatagggaatttgactctccattccaa
ttgattcctgaaaggctcttttggccgtgctcgaagatatc

gaattcatcatggtagaaaatgattaatacacagcaacaggcgtggaaaa
cgcatgctcctcagatacagagtgttaagtagcaaaccaaataagaggtt
ttggtcaggcttagaaatagagtctgttttactacatgcacaagctagaa
tattctgttcgtgagtactcaagtctgccatggttttacttcactaggat
tatatttcaagttaaaactaacattcagtaacataagaaaaatatgagag
ctaatgaggaagtcatgacttccttcttaaactttattgaagattgtccg
gtcttattctatattacatgatattccatcttattattatattcatattt
attactatcctattatatggtatatacttactatacatctatatatagta
ttagtatatagtatatagcatatacttataacacttattactatactaat
atatatgcccatcttacttttagagagtcttgctttgaacttaggaagac
tctctgaacccacatcacagattgacagaaacacattcctccaacatttg
cccaacctcagtctatatataatctagagaagaagtatagattgttgttt
atctgtcataatattcctgagaatggagaaagagaagaattaattgaagt
attccataaaatctcttctaggtgaaagaagacctggtgatgacagtttt
aatatttaaaaaattcaaaaatctaaacttgagctacaagacttctatag
ttttggacaaaagactgtacatgcgagtagcatggaaaagatggaaaaac
atcacgcaaagcgaaaaacctgcaaggtgattttctgtgaaatcaagtca
tttctatattctttgctttagatttaatttgtgagtttcaaagaatgtgt
accacatcctttgatatatgtagatcataagtatgatacagcacattcca
agtaggaatttaaatgttcaggtggcctcaaagacagcacctgatgctaa
gcctataggcctgattcaatatctaggagctacatggtataaaatgaaac
tactgccctaaattgttatttatctctccatgcatgcatggcatgccaca
tgcccccaatcacatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_12420662_12421782
seq2: B6Ng01-339D19.g_66_1182

seq1  GAATTCATCATGGTAGAAAATGATTAATACACAGCAACAGGCGTGGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATGGTAGAAAATGATTAATACACAGCAACAGGCGTGGAAAA  50

seq1  CGCATGCTCCTCAGATACAGAGTGTTAAGTAGCAAACCAAATAAGAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGCTCCTCAGATACAGAGTGTTAAGTAGCAAACCAAATAAGAGGTT  100

seq1  TTGGTCAGGCTTAGAAATAGAGTCTGTTTTACTACATGCACAAGCTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCAGGCTTAGAAATAGAGTCTGTTTTACTACATGCACAAGCTAGAA  150

seq1  TATTCTGTTCGTGAGTACTCAAGTCTGCCATGGTTTTACTTCACTAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTTCGTGAGTACTCAAGTCTGCCATGGTTTTACTTCACTAGGAT  200

seq1  TATATTTCAAGTTAAAACTAACATTCAGTAACATAAGAAAAATATGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCAAGTTAAAACTAACATTCAGTAACATAAGAAAAATATGAGAG  250

seq1  CTAATGAGGAAGTCATGACTTCCTTCTTAAACTTTATTGAAGATTGTCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAGGAAGTCATGACTTCCTTCTTAAACTTTATTGAAGATTGTCCG  300

seq1  GTCTTATTCTATATTACATGATATTCCATCTTATTATTATATTCATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTCTATATTACATGATATTCCATCTTATTATTATATTCATATTT  350

seq1  ATTACTATCCTATTATATGGTATATACTTACTATACATCTATATATAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTATCCTATTATATGGTATATACTTACTATACATCTATATATAGTA  400

seq1  TTAGTATATAGTATATAGCATATACTTATAACACTTATTACTATACTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATATAGTATATAGCATATACTTATAACACTTATTACTATACTAAT  450

seq1  ATATATGCCCATCTTACTTTTAGAGAGTCTTGCTTTGAACTTAGGAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGCCCATCTTACTTTTAGAGAGTCTTGCTTTGAACTTAGGAAGAC  500

seq1  TCTCTGAACCCACATCACAGATTGACAGAAACACATTCCTCCAACATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAACCCACATCACAGATTGACAGAAACACATTCCTCCAACATTTG  550

seq1  CCCAACCTCAGTCTATATATAATCTAGAGAAGAAGTATAGATTGTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCTCAGTCTATATATAATCTAGAGAAGAAGTATAGATTGTTGTTT  600

seq1  ATCTGTCATAATATTCCTGAGAATGGAGAAAGAGAAGAATTAATTGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCATAATATTCCTGAGAATGGAGAAAGAGAAGAATTAATTGAAGT  650

seq1  ATTCCATAAAATCTCTTCTAGGTGAAAGAAGACCTGGTGATGACAGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATAAAATCTCTTCTAGGTGAAAGAAGACCTGGTGATGACAGTTTT  700

seq1  AATATTTAAAAAATTCAAAAATCTAAACTTGAGCTACAAGACTTCTATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAAAAAATTCAAAAATCTAAACTTGAGCTACAAGACTTCTATAG  750

seq1  TTTTGGACAAAAGACTGTACATGCGAGTAGCATGGAAAAGATGGAAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGACAAAAGACTGTACATGCGAGTAGCATGGAAAAGATGGAAAAAC  800

seq1  ATCACGCAAAGCGAAAAACCTGCAAGGTGATTTTCTGTGAAATCAAGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGCAAAGCGAAAAACCTGCAAGGTGATTTTCTGTGAAATCAAGTCA  850

seq1  TTTCTATATTCTTTGCTTTAGATTTAA-TTGTGAGTTTCAAAGAATGTGT  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTCTATATTCTTTGCTTTAGATTTAATTTGTGAGTTTCAAAGAATGTGT  900

seq1  ACCACATCCTTTGATATATGTAGATCATAAGTATGATACAGCACATTCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATCCTTTGATATATGTAGATCATAAGTATGATACAGCACATTCCA  950

seq1  AGTAGGAATTTAAATGTTCAGGTGGCCTGGAAAGACAGCACCTGATGCTA  999
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  AGTAGGAATTTAAATGTTCAGGTGGCCT-CAAAGACAGCACCTGATGCTA  999

seq1  AGCCTATAGGCCTGAATTCAATATCTAGGAGCTACATGGTATAAAAAGGA  1049
      |||||||||||||| ||||||||||||||||||||||||||| |||| ||
seq2  AGCCTATAGGCCTG-ATTCAATATCTAGGAGCTACATGGTAT-AAAATGA  1047

seq1  AACTAACTGCCCCTAATTGTTATTTAATCTCTTCATGCATGCCATGGCAT  1099
      |||| |||||||  ||||||||||| |||||| |||||||| ||||||||
seq2  AACT-ACTGCCCTAAATTGTTATTT-ATCTCTCCATGCATG-CATGGCAT  1094

seq1  G-CACATGCCCACAATCACATAC  1121
      | ||||||||| |||||||||||
seq2  GCCACATGCCCCCAATCACATAC  1117


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