BAC Information

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BAC

Clone NameB6Ng01-339H02
Chromosome9 (Build37)
Map Location 112,376,435 - 112,513,530
singlet/doubletdoublet
Overlap geneLOC100043800
Upstream geneDclk3, LOC620615, Stac, 4930545L08Rik, Arpp21, LOC100039341, LOC620760
Downstream geneEG622110, LOC100039391, LOC100043801, LOC100043802, LOC636680
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339H02.bB6Ng01-339H02.g
ACCGA123438GA123439
length1,156178
definitionB6Ng01-339H02.b B6Ng01-339H02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,512,377 - 112,513,530)(112,376,435 - 112,376,612)
sequence
gaattccttaagtggaaatattgagtttttagaacacaaatataaaatag
cttttttggtaatgataccagttgtataatgctcaaaccttgcagagcaa
ttcaatcataaaatgagaagagcgggagccatggttcacttgcagtgaag
gggtttagaagagtcttggggagaactgggtctcatttgtatcttgatct
aaggatagtcagaaagtcagtgttttcctgacttctgttacattcctgtg
accagtcatctgaggctgagtgccttggattaaattcaatctacttaaca
cagttttatatactgttctagattgggcagatccaactgttggacctctg
gtaaagactttggcttcatcatagccaaggagatgatatctcagtcagag
tcatttagattgagaaaggtaactgaggagggaactggtaagaagtggga
aaccagagagaaaacagtctcactcatatagcaaacatttcttgggctca
tcctgctttagaaacttgacagatcaaggagacagaattatcactcatgg
gggtagcccatggcctccttaccttccatgaggccccacttacccaaact
atcactttcattcagagagcatactgtaaggagtctaagggcttcctgtg
gcttggatgtggttttccacatgatgcctgtgatggggaatgggggcttg
atcatacaaaggcagctcaagagatacaaatcaaggaaggtctcctccgc
atgtcccaggaagggatgattcagggcgggggtattttgaaggaatttac
ttggcctcccaatgctacagcctcatctccagctcagtaacccttttctc
ttccaggcacgttttcagctgtgaccttggacacactgagatatagctaa
attgggtaacagccctttatccttgaagatacagagaagtcaactaacct
aaaacttcccttgatcttaaagtagcctgttttagatatttcatatagta
agtaagcagaccaaactagacaccagaaatatttcctagctgattaagta
ggttctatgaccaggttttctttgtgaaagtattctaccaatggtaagta
aggctcaagattggacttggctttgcctatatggaagctttatctcacca
aagcac
tttttctatgctctattaactcagaaatttcccttgggtggctttttaat
ttgagaatagtttgtctattgagtgtattataatttttttctttttcttt
ttttctctctggccagttgtattagtttactttaattgtgtgcgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_112512377_112513530
seq2: B6Ng01-339H02.b_49_1204 (reverse)

seq1  GTGCTTTGGTGAAGAT-AAGATTCCATATA-GCAAAAC--ACTACAATCT  46
      ||||||||||| |||| ||| ||||||||| ||||| |  | | ||||||
seq2  GTGCTTTGGTG-AGATAAAGCTTCCATATAGGCAAAGCCAAGTCCAATCT  49

seq1  TAAACC-TACTTA-CATTGGTAGATAACCTTTCACAAAG-AAACCTGGTC  93
      | | || |||||| |||||||||| |  ||||||||||| ||||||||||
seq2  TGAGCCTTACTTACCATTGGTAGA-ATACTTTCACAAAGAAAACCTGGTC  98

seq1  ATAGAACTTCCTTTTAAATCAGGCTAGG-AATATTTCTGGTGTCTAGGTT  142
      ||||||| | |||   ||||| |||||| ||||||||||||||||||  |
seq2  ATAGAACCTACTT---AATCA-GCTAGGAAATATTTCTGGTGTCTAG--T  142

seq1  TTGGTCTGCTTTACTTACTATAATGAAATATCTAAAACAGGCTACTTTAA  192
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  TTGGTCTGC-TTACTTACTAT-ATGAAATATCTAAAACAGGCTACTTTAA  190

seq1  GATCAAAGGAAGTTTTA-GTTAGTTGACTTCTCTGTATCTTCAAGGAT-A  240
      |||||| |||||||||| |||||||||||||||||||||||||||||| |
seq2  GATCAAGGGAAGTTTTAGGTTAGTTGACTTCTCTGTATCTTCAAGGATAA  240

seq1  AGGGCTGTTA-CCAATTTAGCTATATCTCAGTGTGTCCAAGGTCACAGCT  289
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGTTACCCAATTTAGCTATATCTCAGTGTGTCCAAGGTCACAGCT  290

seq1  G-AAACGTGCCTGGAAGAGAAAAGGGTTACTGAGCTGGAGATGAGGCTGT  338
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACGTGCCTGGAAGAGAAAAGGGTTACTGAGCTGGAGATGAGGCTGT  340

seq1  AGCATTGGGAGGCCAAGTAAATTCCTTCAAAATACCCCCGCCCTGAATCA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGGGAGGCCAAGTAAATTCCTTCAAAATACCCCCGCCCTGAATCA  390

seq1  TCCCTTCCTGGGACATGCGGAGGAGACCTTCCTTGATTTGTATCTCTTGA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCTGGGACATGCGGAGGAGACCTTCCTTGATTTGTATCTCTTGA  440

seq1  GCTGCCTTTGTATGATCAAGCCCCCATTCCCCATCACAGGCATCATGTGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTTGTATGATCAAGCCCCCATTCCCCATCACAGGCATCATGTGG  490

seq1  AAAACCACATCCAAGCCACAGGAAGCCCTTAGACTCCTTACAGTATGCTC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACATCCAAGCCACAGGAAGCCCTTAGACTCCTTACAGTATGCTC  540

seq1  TCTGAATGAAAGTGATAGTTTGGGTAAGTGGGGCCTCATGGAAGGTAAGG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATGAAAGTGATAGTTTGGGTAAGTGGGGCCTCATGGAAGGTAAGG  590

seq1  AGGCCATGGGCTACCCCCATGAGTGATAATTCTGTCTCCTTGATCTGTCA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATGGGCTACCCCCATGAGTGATAATTCTGTCTCCTTGATCTGTCA  640

seq1  AGTTTCTAAAGCAGGATGAGCCCAAGAAATGTTTGCTATATGAGTGAGAC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTAAAGCAGGATGAGCCCAAGAAATGTTTGCTATATGAGTGAGAC  690

seq1  TGTTTTCTCTCTGGTTTCCCACTTCTTACCAGTTCCCTCCTCAGTTACCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTCTCTGGTTTCCCACTTCTTACCAGTTCCCTCCTCAGTTACCT  740

seq1  TTCTCAATCTAAATGACTCTGACTGAGATATCATCTCCTTGGCTATGATG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATCTAAATGACTCTGACTGAGATATCATCTCCTTGGCTATGATG  790

seq1  AAGCCAAAGTCTTTACCAGAGGTCCAACAGTTGGATCTGCCCAATCTAGA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAAGTCTTTACCAGAGGTCCAACAGTTGGATCTGCCCAATCTAGA  840

seq1  ACAGTATATAAAACTGTGTTAAGTAGATTGAATTTAATCCAAGGCACTCA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATATAAAACTGTGTTAAGTAGATTGAATTTAATCCAAGGCACTCA  890

seq1  GCCTCAGATGACTGGTCACAGGAATGTAACAGAAGTCAGGAAAACACTGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGATGACTGGTCACAGGAATGTAACAGAAGTCAGGAAAACACTGA  940

seq1  CTTTCTGACTATCCTTAGATCAAGATACAAATGAGACCCAGTTCTCCCCA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGACTATCCTTAGATCAAGATACAAATGAGACCCAGTTCTCCCCA  990

seq1  AGACTCTTCTAAACCCCTTCACTGCAAGTGAACCATGGCTCCCGCTCTTC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTCTAAACCCCTTCACTGCAAGTGAACCATGGCTCCCGCTCTTC  1040

seq1  TCATTTTATGATTGAATTGCTCTGCAAGGTTTGAGCATTATACAACTGGT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTATGATTGAATTGCTCTGCAAGGTTTGAGCATTATACAACTGGT  1090

seq1  ATCATTACCAAAAAAGCTATTTTATATTTGTGTTCTAAAAACTCAATATT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTACCAAAAAAGCTATTTTATATTTGTGTTCTAAAAACTCAATATT  1140

seq1  TCCACTTAAGGAATTC  1154
      ||||||||||||||||
seq2  TCCACTTAAGGAATTC  1156

seq1: chr9_112376435_112376612
seq2: B6Ng01-339H02.g_72_249

seq1  TTTTTCTATGCTCTATTAACTCAGAAATTTCCCTTGGGTGGCTTTTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTATGCTCTATTAACTCAGAAATTTCCCTTGGGTGGCTTTTTAAT  50

seq1  TTGAGAATAGTTTGTCTATTGAGTGTATTATAATTTTTTTCTTTTTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATAGTTTGTCTATTGAGTGTATTATAATTTTTTTCTTTTTCTTT  100

seq1  TTTTCTCTCTGGCCAGTTGTATTAGTTTACTTTAATTGTGTGCGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTCTGGCCAGTTGTATTAGTTTACTTTAATTGTGTGCGTGTGTG  150

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTG  178
      ||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTG  178