BAC Information

Click to search

BAC

Clone NameB6Ng01-339J12
Chromosome9 (Build37)
Map Location 120,491,928 - 120,492,936
singlet/doubletsinglet
Overlap genenone
Upstream geneScn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik
Downstream geneLOC100040010, Ctnnb1, Ulk4, Trak1, Cck, Lyzl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339J12.bB6Ng01-339J12.g
ACCGA123547GA123548
length1,1551,024
definitionB6Ng01-339J12.b B6Ng01-339J12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctctgaggaaacagactgggaggaagaagcagcccattacca
gccagctaattggtcaagaaaaaagccaaaagcggctggcgaaagccagc
gtactgttcaacctcccggcagtcggtttcaaggtccgccctatgcggag
cccccgccctgcgtagtgcgtcagcaatgcgcagagaggcaatgcgcaga
gagatgcgcagagaggcaatgcgcagagagatgcgcagagaggcaatgcg
cagagagatgcgcagagaggcagtgcgcagagagatgcgcagagaggcag
tgcgcagagagatgcgcagagaggcagtgcgcagagaggcagtgcgcaga
gaggcagtgcgcagactcattcattcccagagaggaacaaaggaaaatac
aacaggcatttccagtctttgaaggagccgagggtgggcgtgtccacgct
ccggtagaatacttacaaattaaagaactcgccgagtcggtccgtaaata
cggaaccaatgctaattttaccttggtgcagttagacaggctcgccggca
tggcactaactcctgccgactggcaaacggttgtaaaagccgctctccct
agtatgggcaaatatatggaatggagagctctttggcatgaaactgcaca
agcgcaggcccgagcaaacgcagctgctttgactccagagcagagagatt
ggacttttgacttgttaacgggtcagggagcttattctgctgatcaaaca
aactaccattggggagcttatgcccagatttcttccacggctattagggc
ctggaaggcgctctcccgagcaggtgaaaccactggtcaattaacaaaag
ttgtccagggacctcaggaatcctttctcagattttgtgggccagaatga
cagaggcagcagagcgtatttttgggagattcagagcaagccgcgcctct
ggtagacagctaatctatgagcagccacaaaggagtgccgagcggccata
gccccagaaagaacaaagcttacagactgctcagtcttgtcgaggagctt
gggggacctctcaccatgcagctaggcggtcggcattctccatctcagaa
ccgttcatgccagaataatcgagacattgtttaactggcggaaaagcctg
gggct
cttacagactgtaggtggagaacagaacactgcggtctctgcacactgac
agcagcggctgtgtcggctaggcttgggagctgcaaggtcagttagggaa
tcacttgtcctgcctggcctgttgtaattaaaaagaaacgacctggggcc
agtgacatagcacttgccaccaagccatacaccctgagttctgtgccctg
ggatcccacagtaggagagaaccaactctcacaagttacggctgacttca
aatggcagatgggttccttggcaaaaatgcacccctccacgtgcgcgtgc
gcgtgcgcgcgcgcgcgcacacacacacacacgggcacacacacacacac
acacacacacgggcacacaataaacaggaagaagcgtgttgccagaaatg
taatacctgcaggagaactggagcgagcttctgatcatgcattttagaac
ttaatggcagattcttttttttttcttcaagttttctcagatttggagtg
tgtgtgtgtatatatatatatgccacacacatgcaggtgccctcagaggc
cagaaatgagtgtcaaatctgctggccccaaagttacagatagttgtgaa
cagtctggttgtgggtgttgggcactgaacaggggtctgcagtaagagca
gcaagtgcttttaacttctgagccacctcacctggtgtagcaatgactga
ggggcaggggcgggaggagttggcaccactgactgtaggggggtgctact
gctgttggagataggggatgctggtatgactgattattccagaatggtga
tgtgctgtttctgtcagagcttgttgaggaccaccgcagtgcaaatgctt
gaatgatatagcagtgagaagtcactgtgttgcgttacacctgtggtagc
tagtgtgcacagtcacatcttttacaacagaaaaggctttccctttttag
ttttaccccttttattctaggctgtaagaaatatcttaagcttttttttg
tgttggtttgattgatctgttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_120491928_120492936
seq2: B6Ng01-339J12.g_73_1096

seq1  CTTACAGACTGTAGGTGGAGAACAGAACACTGCGGTCTCTGCACACTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGACTGTAGGTGGAGAACAGAACACTGCGGTCTCTGCACACTGAC  50

seq1  AGCAGCGGCTGTGTCGGCTAGGCTTGGGAGCTGCAAGGTCAGTTAGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCGGCTGTGTCGGCTAGGCTTGGGAGCTGCAAGGTCAGTTAGGGAA  100

seq1  TCACTTGTCCTGCCTGGCCTGTTGTAATTAAAAAGAAACGACCTGGGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGTCCTGCCTGGCCTGTTGTAATTAAAAAGAAACGACCTGGGGCC  150

seq1  AGTGACATAGCACTTGCCACCAAGCCATACACCCTGAGTTCTGTGCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACATAGCACTTGCCACCAAGCCATACACCCTGAGTTCTGTGCCCTG  200

seq1  GGATCCCACAGTAGGAGAGAACCAACTCTCACAAGTTACGGCTGACTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCCACAGTAGGAGAGAACCAACTCTCACAAGTTACGGCTGACTTCA  250

seq1  AATGGCAGATGGGTTCCTTGGCAAAAATGCACCCCTCCACGTGCGCGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAGATGGGTTCCTTGGCAAAAATGCACCCCTCCACGTGCGCGTGC  300

seq1  GCGTGCGCGCGCGCGCGCACACACACACACACGGGCACACACACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGCGCGCGCGCGCACACACACACACACGGGCACACACACACACAC  350

seq1  ACACACACACGGGCACACAATAAACAGGAAGAAGCGTGTTGCCAGAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACGGGCACACAATAAACAGGAAGAAGCGTGTTGCCAGAAATG  400

seq1  TAATACCTGCAGGAGAACTGGAGCGAGCTTCTGATCATGCATTTTAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCTGCAGGAGAACTGGAGCGAGCTTCTGATCATGCATTTTAGAAC  450

seq1  TTAATGGCAGATTCTTTTTTTTTTCTTCAAGTTTTCTCAGATTTGGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGCAGATTCTTTTTTTTTTCTTCAAGTTTTCTCAGATTTGGAGTG  500

seq1  TGTGTGTGTATATATATATATGCCACACACATGCAGGTGCCCTCAGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATATATATATATGCCACACACATGCAGGTGCCCTCAGAGGC  550

seq1  CAGAAATGAGTGTCAAATCTGCTGGCCCCAAAGTTACAGATAGTTGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGAGTGTCAAATCTGCTGGCCCCAAAGTTACAGATAGTTGTGAA  600

seq1  CAGTCTGGTTGTGGGTGTTGGGCACTGAACAGGGGTCTGCAGTAAGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGGTTGTGGGTGTTGGGCACTGAACAGGGGTCTGCAGTAAGAGCA  650

seq1  GCAAGTGCTTTTAACTTCTGAGCCACCTCACCTGGTGTAGCAATGACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGCTTTTAACTTCTGAGCCACCTCACCTGGTGTAGCAATGACTGA  700

seq1  GGGGCAGGGGCGGGAGGAGTTGGCACCACTGACTGTA-GGGGGTGCTACT  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGGGCAGGGGCGGGAGGAGTTGGCACCACTGACTGTAGGGGGGTGCTACT  750

seq1  GCTGTTGGAGATAGGGGATGCTGGTATGACTGATTATTCCAGAATGGTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGGAGATAGGGGATGCTGGTATGACTGATTATTCCAGAATGGTGA  800

seq1  TGTGCTGTTTCTGTCAGAGCTTGTTGAGGACCACCGCAGTGCAAATGCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTTTCTGTCAGAGCTTGTTGAGGACCACCGCAGTGCAAATGCTT  850

seq1  GAATGATATAGCAGTGAGAAGTCACTGTG-TGCGTTACACCTGTGGTAGC  898
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATGATATAGCAGTGAGAAGTCACTGTGTTGCGTTACACCTGTGGTAGC  900

seq1  TAGTGTGCACAGTCACATC-TTTAC-ACAG-AAAGGCTTT-CCTTTTTAG  944
      ||||||||||||||||||| ||||| |||| ||||||||| |||||||||
seq2  TAGTGTGCACAGTCACATCTTTTACAACAGAAAAGGCTTTCCCTTTTTAG  950

seq1  TTTTACCC--TTTATTCTA-GCTGTA--GAATATCTT-AGCTTTTTTTTG  988
      ||||||||  ||||||||| ||||||   |||||||| ||||||||||||
seq2  TTTTACCCCTTTTATTCTAGGCTGTAAGAAATATCTTAAGCTTTTTTTTG  1000

seq1  TTGTTGTTTTGTTT----TGTTTTT  1009
       ||||| |||| ||    |||||||
seq2  -TGTTGGTTTGATTGATCTGTTTTT  1024