BAC Information

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BAC

Clone NameB6Ng01-340B12
Chromosome9 (Build37)
Map Location 67,934,831 - 67,936,059
singlet/doubletsinglet
Overlap genenone
Upstream geneTln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c
Downstream geneLOC100041451, Rora, 9530091C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340B12.bB6Ng01-340B12.g
ACCGA123901GA123902
length1,2191,032
definitionB6Ng01-340B12.b B6Ng01-340B12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccacactgaccctgttgtatcctctgcccctttattggtgctt
tctggctgttcgtacttaggcttattattgtattcaatagcaatgaacag
ttcattgcagcattgaggacattagacaaagcatggtacatgtgtctagg
gaaggtaccagctccccaaatgtggttttaatgtccccaagcaagtcaga
cttttgcacactaacacattcagagttaaacttaatattcttggagtcct
ttctgctttcagagggattcctttacaaatgcccatctaacccggctttc
cccttgtttcagttttctttagaggcttaatacttcgcctctcatgtaac
acacacagcttttcctattttctgttgtctttaggaattgtgtaaaacct
gtcacactctataaagattgtacagcagctgaggaaattttataccaagt
gtgaaaggtgttcactgacctgtcattaacagtgacatgatgccaataga
gaggagcctgttgtaaacacagggatggtctctttcaatctgccaactat
tcattgtatcattatcagaaccaacattgcatttataggaaaggcttata
gtatcttgagaaatgggaaatattcaaaagatagtatacatgattaatct
tcacaccagagtttgcacctaacacatcacttgaaaaaaaagagatctaa
gcagggtgttggtgggcgaaggtcaggaaccacttgggttaaggaaggag
agggaattgttgactagacagttcatcagtgggctgcaaaaattcttaac
ctttaaaaccagcacagacagggtgacatggcctcagcaataacagtagg
tactaaatgcttctgtctttttctaggttctttagtatttctctcttgta
actcatgtaacaacccaatgcagtggggtccactgctttgtccagctcat
agaggaggaaacccaattatagcagaggacaaaacctgtcaggctagagc
agctgcactgggattcaaatccagcattcgcatcatagacttgtgcttgt
gtcatattatggtggagaagaaagtttcatacacttagtgcagaagaatg
ccaaaggggaagagatgacaaagtgcatgacctatgcttggaggctgtca
gcatccctctttgctccatacccaattggctccatcatgaagttcagttc
actctgaccttggctgtgt

gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgacattt
aatgatttctaataagcattagttcatgttcttcagatatgagtttaaaa
ttccccacccttttcccaggaaagatcccttttaattctttcaagtctct
caatttatatgaagggaagagaagaagacagacactaaaaagttgtctca
gtcagtactgaacattaggccttgttcactgccagattttgagaattcta
ctggggtgttagtcaaacaactcattggataatagaggtactagcttctt
tcctgttgctatgatgattgatatgttataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_67934831_67936059
seq2: B6Ng01-340B12.b_46_1264

seq1  GAATTCTCCACACTGACCCTGTTGTATCCTCTGCCCCTTTATTGGTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCACACTGACCCTGTTGTATCCTCTGCCCCTTTATTGGTGCTT  50

seq1  TCTGGCTGTTCGTACTTAGGCTTATTATTGTATTCAATAGCAATGAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGTTCGTACTTAGGCTTATTATTGTATTCAATAGCAATGAACAG  100

seq1  TTCATTGCAGCATTGAGGACATTAGACAAAGCATGGTACATGTGTCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCAGCATTGAGGACATTAGACAAAGCATGGTACATGTGTCTAGG  150

seq1  GAAGGTACCAGCTCCCCAAATGTGGTTTTAATGTCCCCAAGCAAGTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTACCAGCTCCCCAAATGTGGTTTTAATGTCCCCAAGCAAGTCAGA  200

seq1  CTTTTGCACACTAACACATTCAGAGTTAAACTTAATATTCTTGGAGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCACACTAACACATTCAGAGTTAAACTTAATATTCTTGGAGTCCT  250

seq1  TTCTGCTTTCAGAGGGATTCCTTTACAAATGCCCATCTAACCCGGCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTTCAGAGGGATTCCTTTACAAATGCCCATCTAACCCGGCTTTC  300

seq1  CCCTTGTTTCAGTTTTCTTTAGAGGCTTAATACTTCGCCTCTCATGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTTTCAGTTTTCTTTAGAGGCTTAATACTTCGCCTCTCATGTAAC  350

seq1  ACACACAGCTTTTCCTATTTTCTGTTGTCTTTAGGAATTGTGTAAAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGCTTTTCCTATTTTCTGTTGTCTTTAGGAATTGTGTAAAACCT  400

seq1  GTCACACTCTATAAAGATTGTACAGCAGCTGAGGAAATTTTATACCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACTCTATAAAGATTGTACAGCAGCTGAGGAAATTTTATACCAAGT  450

seq1  GTGAAAGGTGTTCACTGACCTGTCATTAACAGTGACATGATGCCAATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGTGTTCACTGACCTGTCATTAACAGTGACATGATGCCAATAGA  500

seq1  GAGGAGCCTGTTGTAAACACAGGGATGGTCTCTTTCAATCTGCCAACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCCTGTTGTAAACACAGGGATGGTCTCTTTCAATCTGCCAACTAT  550

seq1  TCATTGTATCATTATCAGAACCAACATTGCATTTATAGGAAAGGCTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTATCATTATCAGAACCAACATTGCATTTATAGGAAAGGCTTATA  600

seq1  GTATCTTGAGAAATGGGAAATATTCAAAAGATAGTATACATGATTAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTGAGAAATGGGAAATATTCAAAAGATAGTATACATGATTAATCT  650

seq1  TCACACCAGAGTTTGCACCTAACACATCACTTGAAAAAAAAGAGATCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCAGAGTTTGCACCTAACACATCACTTGAAAAAAAAGAGATCTAA  700

seq1  GCAGGGTGTTGGTGGGCGAAGGTCAGGAACCACTTGGGTTAAGGAAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTGTTGGTGGGCGAAGGTCAGGAACCACTTGGGTTAAGGAAGGAG  750

seq1  AGGGAATTGTTGACTAGACAGTTCATCAGTGGGCTGCAAAAATTCTTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATTGTTGACTAGACAGTTCATCAGTGGGCTGCAAAAATTCTTAAC  800

seq1  CTTTAAAACCAGCACAGACAGGGTGACATGGCCTCAGCAATAACAGTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAACCAGCACAGACAGGGTGACATGGCCTCAGCAATAACAGTAGG  850

seq1  TACTAAATGCTTCTGTCTTTTTCTAGGTTCTTTAGTATTTCTCTCTTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAATGCTTCTGTCTTTTTCTAGGTTCTTTAGTATTTCTCTCTTGTA  900

seq1  ACTCATGTAACAACCCAATGCAGTGGGGTCCACTGCTTTGTCCAGCTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGTAACAACCCAATGCAGTGGGGTCCACTGCTTTGTCCAGCTCAT  950

seq1  AGAGGAGGAAACCCAAATATAGCAGAAGACAAAAACCTGTCAGGCTAGAA  1000
      |||||||||||||||| ||||||||| ||| ||||||||||||||||| |
seq2  AGAGGAGGAAACCCAATTATAGCAGAGGAC-AAAACCTGTCAGGCTAG-A  998

seq1  GCAGCTGCACTGGGATTCAAATCCAGCATTCGGCATCATAGAACTTGTGC  1050
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  GCAGCTGCACTGGGATTCAAATCCAGCATTC-GCATCATAG-ACTTGTGC  1046

seq1  TTGGTGTCATA-TATGTGGGAGAAGAAAGTTTCCATACACTTAGTGCAGA  1099
      || |||||||| ||||  |||||||||||||| |||||||||||||||||
seq2  TT-GTGTCATATTATGGTGGAGAAGAAAGTTT-CATACACTTAGTGCAGA  1094

seq1  GAAATGCAAAGGGGGAAGAGATGACAAAGTGCATGGACCTATGCTT-GAG  1148
        ||||| || ||||||||||||||||||||||| ||||||||||| |||
seq2  AGAATGCCAAAGGGGAAGAGATGACAAAGTGCAT-GACCTATGCTTGGAG  1143

seq1  GCTGGTCAGCAT-CCTCTTTGCT-CATACCCAATT-GCTCATTCACTGGA  1195
      ||| |||||||| |||||||||| ||||||||||| ||||  ||| || |
seq2  GCT-GTCAGCATCCCTCTTTGCTCCATACCCAATTGGCTCCATCA-TGAA  1191

seq1  GTTTTCCCAGGTCACCTCTGAGCTTTGGCTGTGT  1229
      |||    ||| ||| |||||| | ||||||||||
seq2  GTT----CAGTTCA-CTCTGA-CCTTGGCTGTGT  1219


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