BAC Information

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BAC

Clone NameB6Ng01-340E09
Chromosome9 (Build37)
Map Location 26,297,724 - 26,434,737
singlet/doubletdoublet
Overlap genenone
Upstream gene2310005P05Rik
Downstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19, LOC666440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340E09.bB6Ng01-340E09.g
ACCGA124028GA124029
length1,169879
definitionB6Ng01-340E09.b B6Ng01-340E09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,433,563 - 26,434,737)(26,297,724 - 26,297,875)
sequence
gaattcccgaactctaaatttcatccttctccaaatctgcctctcatagc
atatagcctctggttccttacgatgccagtacattgaccctcgttcactc
cttggaatagggatccaattgagaagcatgtgagctccaggaagggattt
ggagtcttctggcctagaatggctgaagattcctgggtatctagagacag
tgactacatggacacaagtctctagtgaggtgcgtttggacttccactga
ggaaggtacctcaatggttctacatcagcaggggatccttgaatggaatg
gatggacagcctccatcaggttgctgagacaatcaattgtctgcctttat
cctggtaacattccacctgtccagagactaagccgagcctcaggcatgag
tccagacagcagtccacagatgaatttgggcttaattccatatctacact
gtcatctcccattccccaaccactatgttcaacaatgcagagggagctag
aagggaggctatgagacagcctggactagttatttgactctctccttgga
gtcctcatggaaggatctagagagctgggcagactggtgttctatataca
gccaagatgcagaagcgcgagtagaatcaggctgagagcaagtaagccac
atagactgggaacttcaggtttgctctgcagactgatgttcctaggaagc
tcctccccttcagacttcatagtccatggctgctgtgtaagccctgactt
gacccttctataatgcctctcctcagcaggaaagttattgctccagtgta
gagacgagggagcgctgagctttcttacctccagcttctcattcacacct
ctgtccacgggagcttctgcataaatgctggcagccaatttatcacctca
ttgacacttatgcttgacacctaggaagctgaatttattcagggactgca
aacaggaactcacaccaaagaagaatgcagtggccatatggacttgtgtt
tcctggtttaaatgagttctttgtgatgacatagaaacttgacattacat
ctctgaggcctccagtccatcacagggtcatgggaatatatctatatcct
cagttgtttggctctggtctaccaagttcctgatataaagcaataacctc
actgctaatgatctggcct
gaattcactaacgaaatgagaggcacccagactcaagcatcaagatatgg
ctgtgggaagaaaggagaagactggtagatctggcataatggaataagag
cagaagcctcatagaagagacttagtgtggggaagaggggggaggtgagg
ggctttccacaacattctttattgacgtaatcaagatacagttgggaatc
tgattttggttatcacctcctccccctacacctgacctcacaagaaagat
acctggagccttccgctcgactcgagactcgagccccgggctaccttgcc
agcagagtcttgcccaacacccgcaagggcccacacgggactccccacgg
gaccctaagacctctggtgagtggaacacagcgcctgccccaatccaatt
gcgcggaacctgagactgcggtacatagggaagcaggctacctgggcctg
atctggggcacaagtcccttccgctcgactcgagactcgagccccgggct
accttgccagcagagtcttgcccaacacccgcaagggcccacacgggcct
ccccacgggaccctaagacctctggtgagtggaacacagcgcctgcccca
atccaattgcgcggaacctgagactgcggtacatagggaagcaggctacc
cgggcttgatctggggcacaaaccccttccactccactcgagccccgggc
tacccttgcccagctgagtcgcctgacacccgcaagggcccacacaggat
tccacacgtgatcctaagacctctagtgagtggaacacaacttctgccag
gagtctggtttgaacaccagatatctgggtacctgccttgcaagaagaga
gctgccttgcagagaatactctgccactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_26433563_26434737
seq2: B6Ng01-340E09.b_44_1212 (reverse)

seq1  AGGCCAGA-CATTAGCAGTTGAGGTATCTCCTTTATA-CAGGAACTTTGT  48
      |||||||| ||||||||| ||||||   | ||||||| ||||||||| ||
seq2  AGGCCAGATCATTAGCAG-TGAGGTTATTGCTTTATATCAGGAACTTGGT  49

seq1  AGACCCAGAGCCCAAACAACTGAGGAATATAGAATATA-TCCCATGACCC  97
      ||| |||||| |||||||||||||| |||||| ||||| |||||||| ||
seq2  AGA-CCAGAG-CCAAACAACTGAGG-ATATAG-ATATATTCCCATGA-CC  94

seq1  CTGTGATGGACTTGGAAGGCCTCAGAGATGT-ATGTCAAGTTTTCTATTG  146
      ||||||||||||  | ||||||||||||||| |||||||| |||||| ||
seq2  CTGTGATGGACT--GGAGGCCTCAGAGATGTAATGTCAAG-TTTCTA-TG  140

seq1  TCATCACAAAGAACTCATTTAAACCAGAAAAACACAAGTCCATATGGCCA  196
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  TCATCACAAAGAACTCATTTAAACCAG-GAAACACAAGTCCATATGGCCA  189

seq1  CTGCCTTCTTCTTTGTGGTGAGTTCCTGTTTGCAGTCCCTGAATAAATTC  246
      |||| ||||||||||  |||||||||||||||||||||||||||||||||
seq2  CTGCATTCTTCTTTGGTGTGAGTTCCTGTTTGCAGTCCCTGAATAAATTC  239

seq1  AGCTTCCTAGGTGTCAAGCATAAGTGTCAATGAGGTGATAAATTGGCTGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTAGGTGTCAAGCATAAGTGTCAATGAGGTGATAAATTGGCTGC  289

seq1  CAGCATTTATGCAGAAGCTCCCGTGGACAGAGGTGTGAATGAGAAGCTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTATGCAGAAGCTCCCGTGGACAGAGGTGTGAATGAGAAGCTGG  339

seq1  AGGTAAGAAAGCTCAGCGCTCCCTCGTCTCTACACTGGAGCAATAACTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGAAAGCTCAGCGCTCCCTCGTCTCTACACTGGAGCAATAACTTT  389

seq1  CCTGCTGAGGAGAGGCATTATAGAAGGTTCAAGTCA-GGCTTACACAGCA  445
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  CCTGCTGAGGAGAGGCATTATAGAAGGGTCAAGTCAGGGCTTACACAGCA  439

seq1  GCCATGGACTATGAAGTCTGAAGGGGAGGAGCTTCCTAGGAACATCAGTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGACTATGAAGTCTGAAGGGGAGGAGCTTCCTAGGAACATCAGTC  489

seq1  TGCAGAGCAAACCTGAAGTTCCCAGTCTATGTGGCTTACTTGCTCTCAGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGCAAACCTGAAGTTCCCAGTCTATGTGGCTTACTTGCTCTCAGC  539

seq1  CTGATTCTACTCGCGCTTCTGCATCTTGGCTGTATATAGAACACCAGTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTACTCGCGCTTCTGCATCTTGGCTGTATATAGAACACCAGTCT  589

seq1  GCCCAGCTCTCTAGATCCTTCCATGAGGACTCCAAGGAGAGAGTCAAATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCTCTCTAGATCCTTCCATGAGGACTCCAAGGAGAGAGTCAAATA  639

seq1  ACTAGTCCAGGCTGTCTCATAGCCTCCCTTCTAGCTCCCTCTGCATTGTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTCCAGGCTGTCTCATAGCCTCCCTTCTAGCTCCCTCTGCATTGTT  689

seq1  GAACATAGTGGTTGGGGAATGGGAGATGACAGTGTAGATATGGAATTAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAGTGGTTGGGGAATGGGAGATGACAGTGTAGATATGGAATTAAG  739

seq1  CCCAAATTCATCTGTGGACTGCTGTCTGGACTCATGCCTGAGGCTCGGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATTCATCTGTGGACTGCTGTCTGGACTCATGCCTGAGGCTCGGCT  789

seq1  TAGTCTCTGGACAGGTGGAATGTTACCAGGATAAAGGCAGACAATTGATT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCTGGACAGGTGGAATGTTACCAGGATAAAGGCAGACAATTGATT  839

seq1  GTCTCAGCAACCTGATGGAGGCTGTCCATCCATTCCATTCAAGGATCCCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGCAACCTGATGGAGGCTGTCCATCCATTCCATTCAAGGATCCCC  889

seq1  TGCTGATGTAGAACCATTGAGGTACCTTCCTCAGTGGAAGTCCAAACGCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATGTAGAACCATTGAGGTACCTTCCTCAGTGGAAGTCCAAACGCA  939

seq1  CCTCACTAGAGACTTGTGTCCATGTAGTCACTGTCTCTAGATACCCAGGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTAGAGACTTGTGTCCATGTAGTCACTGTCTCTAGATACCCAGGA  989

seq1  ATCTTCAGCCATTCTAGGCCAGAAGACTCCAAATCCCTTCCTGGAGCTCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGCCATTCTAGGCCAGAAGACTCCAAATCCCTTCCTGGAGCTCA  1039

seq1  CATGCTTCTCAATTGGATCCCTATTCCAAGGAGTGAACGAGGGTCAATGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTCTCAATTGGATCCCTATTCCAAGGAGTGAACGAGGGTCAATGT  1089

seq1  ACTGGCATCGTAAGGAACCAGAGGCTATATGCTATGAGAGGCAGATTTGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCATCGTAAGGAACCAGAGGCTATATGCTATGAGAGGCAGATTTGG  1139

seq1  AGAAGGATGAAATTTAGAGTTCTGGAATTC  1175
      |||||||||||||||||||||| |||||||
seq2  AGAAGGATGAAATTTAGAGTTCGGGAATTC  1169

seq1: chr9_26297724_26297875
seq2: B6Ng01-340E09.g_67_218

seq1  GAATTCACTAAGGAAATGAGAGGCACCCAGACTCAAGCATCAAGATATGG  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAACGAAATGAGAGGCACCCAGACTCAAGCATCAAGATATGG  50

seq1  CTGTGGGAAGAAAGGAGAAGACTGGTAGATCTGGCATAATGGAATAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGAAGAAAGGAGAAGACTGGTAGATCTGGCATAATGGAATAAGAG  100

seq1  CAGAAGCCTCATAGAAGAGACTTAGTGTGGGGAAGAGGGGGGAGGTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCTCATAGAAGAGACTTAGTGTGGGGAAGAGGGGGGAGGTGAGG  150

seq1  GG  152
      ||
seq2  GG  152