BAC Information

Click to search

BAC

Clone NameB6Ng01-341L14
Chromosome9 (Build37)
Map Location 8,841,685 - 8,953,485
singlet/doubletdoublet
Overlap genePgr
Upstream geneBirc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6
Downstream gene9030420J04Rik, Cntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341L14.bB6Ng01-341L14.g
ACCGA125024GA125025
length1,134139
definitionB6Ng01-341L14.b B6Ng01-341L14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,952,346 - 8,953,485)(8,841,685 - 8,841,823)
sequence
gaattctcagagctcactgccagccagtctagccaggctcagtgagaaac
cctgcccttaaaagtaaggaagagaatagctgggaagacactcagtggta
acctctgaactccacacatgcacacatacacttttatgtgcacatggaca
taaagatatgaatagattcataccaattacacatatctgtacaaataaac
agtaatgaaatgtatatttagtatattttcagaacattaatttcatatat
attatttattagcttgtatcatatccatatatgaactttatcatatataa
agtgacaggttggtagaaagtgagattcaattaattagacataataaagt
attaacagaatgttcaatattatctttagtaattcactcattctgtaaat
tggttctaatttctaacctttctaatatgtttttaaaacatctaaatatt
tgacataactacgctaggttttttttcattttgtcattgttttatattaa
tctatgactagttttaaattttctataaagatgtacatacatgattctgt
tttctgaaaatcagactctgtgtatatattcactttatctttatttttaa
tctcattctctcgcgcttctggattctaagcttatcagtgtcttgaaata
aaggaacactttttttgtagtataaaaggtaacttttattgaaatatttc
aaagtttactcagttactaacattcatagcagaacatatatttccatcta
acagaatagaactcagaaaataacctccttactccaccttttggaggtgt
agctgtggaaaaagtccaatgttaaataacttgtacatggctagctcaca
agcagtttctccccattgactgtgacaccattccattattttatactgaa
acaatgctaggaaaatagagatcagattcctgtgatgataatgattagag
agatttcatgcacttgagatcataagcaaactgacaccttatgggaagtg
atggatgaccgctaattgtgtttaacaagtagtgtaaaaaatgtactttc
tgtaagttttcttggcttataattcttgaaaatttgcctgtggatttcca
aatctcactacttaaaaaagatatagggagagga
tatgaacattgtagagacaaccactgactaccaaagcaatccagtgagca
tagaaagggaaggaaggaaagatggaaggggaaaaggaagagatggagaa
cgggaggaaggaaggaaggaaggaaggaaggaaggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_8952346_8953485
seq2: B6Ng01-341L14.b_52_1185 (reverse)

seq1  TCCTCT-CCTTTATCCTTTTTTTTAAGTAGTGAGAATTGGAAAATCCACA  49
      |||||| ||| ||||   ||||||||||||||||| |||| |||||||||
seq2  TCCTCTCCCTATATC---TTTTTTAAGTAGTGAGATTTGG-AAATCCACA  46

seq1  GCAATATTTTTCAAGGATTATTAAGCCAAG-ACACTTACAGAAAAGTACA  98
      |  | | |||||||| |||| ||||||||| | |||||||| ||||||||
seq2  GGCA-AATTTTCAAGAATTA-TAAGCCAAGAAAACTTACAG-AAAGTACA  93

seq1  TTTTTTACACTACTTGTTAAACACAATTAGCGGTCATCCATCACTTCCCA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACACTACTTGTTAAACACAATTAGCGGTCATCCATCACTTCCCA  143

seq1  TAGGTTGTTCAGTTTGCTTATGATCTCAAGTGCATGAAATCTCTCTAATC  198
      || | || ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTG-TCAGTTTGCTTATGATCTCAAGTGCATGAAATCTCTCTAATC  192

seq1  ATTATCATCACAGGAATCTGATCTCTATTTTCCTAGCTTTGTTTCAGTAT  248
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTATCATCACAGGAATCTGATCTCTATTTTCCTAGCATTGTTTCAGTAT  242

seq1  AAAATAATGGAATGGTGTCACAGTCAATGGGGAGAAACTGCTTGTGAGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATGGAATGGTGTCACAGTCAATGGGGAGAAACTGCTTGTGAGCT  292

seq1  AGCCATGTACAAGTTATTTAACATTGGACTTTTTCCACAGCTACACCTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGTACAAGTTATTTAACATTGGACTTTTTCCACAGCTACACCTCC  342

seq1  AAAAGGTGGAGTAAGGAGGTTATTTTCTGAGTTCTATTCTGTTAGATGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGGAGTAAGGAGGTTATTTTCTGAGTTCTATTCTGTTAGATGGA  392

seq1  AATATATGTTCTGCTATGAATGTTAGTAACTGAGTAAACTTTGAAATATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGTTCTGCTATGAATGTTAGTAACTGAGTAAACTTTGAAATATT  442

seq1  TCAATAAAAGTTACCTTTTATACTACAAAAAAAGTGTTCCTTTATTTCAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAAAGTTACCTTTTATACTACAAAAAAAGTGTTCCTTTATTTCAA  492

seq1  GACACTGATAAGCTTAGAATCCAGAAGCGCGAGAGAATGAGATTAAAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGATAAGCTTAGAATCCAGAAGCGCGAGAGAATGAGATTAAAAAT  542

seq1  AAAGATAAAGTGAATATATACACAGAGTCTGATTTTCAGAAAACAGAATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAAGTGAATATATACACAGAGTCTGATTTTCAGAAAACAGAATC  592

seq1  ATGTATGTACATCTTTATAGAAAATTTAAAACTAGTCATAGATTAATATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTACATCTTTATAGAAAATTTAAAACTAGTCATAGATTAATATA  642

seq1  AAACAATGACAAAATGAAAAAAAACCTAGCGTAGTTATGTCAAATATTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGACAAAATGAAAAAAAACCTAGCGTAGTTATGTCAAATATTTA  692

seq1  GATGTTTTAAAAACATATTAGAAAGGTTAGAAATTAGAACCAATTTACAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTAAAAACATATTAGAAAGGTTAGAAATTAGAACCAATTTACAG  742

seq1  AATGAGTGAATTACTAAAGATAATATTGAACATTCTGTTAATACTTTATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTGAATTACTAAAGATAATATTGAACATTCTGTTAATACTTTATT  792

seq1  ATGTCTAATTAATTGAATCTCACTTTCTACCAACCTGTCACTTTATATAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAATTAATTGAATCTCACTTTCTACCAACCTGTCACTTTATATAT  842

seq1  GATAAAGTTCATATATGGATATGATACAAGCTAATAAATAATATATATGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGTTCATATATGGATATGATACAAGCTAATAAATAATATATATGA  892

seq1  AATTAATGTTCTGAAAATATACTAAATATACATTTCATTACTGTTTATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGTTCTGAAAATATACTAAATATACATTTCATTACTGTTTATTT  942

seq1  GTACAGATATGTGTAATTGGTATGAATCTATTCATATCTTTATGTCCATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGATATGTGTAATTGGTATGAATCTATTCATATCTTTATGTCCATG  992

seq1  TGCACATAAAAGTGTATGTGTGCATGTGTGGAGTTCAGAGGTTACCACTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATAAAAGTGTATGTGTGCATGTGTGGAGTTCAGAGGTTACCACTG  1042

seq1  AGTGTCTTCCCAGCTATTCTCTTCCTTACTTTTAAGGGCAGGGTTTCTCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTCCCAGCTATTCTCTTCCTTACTTTTAAGGGCAGGGTTTCTCA  1092

seq1  CTGAGCCTGGCTAGACTGGCTGGCAGTGAGCTCTGAGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCTGGCTAGACTGGCTGGCAGTGAGCTCTGAGAATTC  1134

seq1: chr9_8841685_8841823
seq2: B6Ng01-341L14.g_75_213

seq1  TATGAACATTGTAGAGACAACCACTGACTACCAAAGCAATCCAGTGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACATTGTAGAGACAACCACTGACTACCAAAGCAATCCAGTGAGCA  50

seq1  TAGAAAGGGAAGGAAGGAAAGATGGAAGGGGAAAAGGAAGAGATGGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGGAAGGAAGGAAAGATGGAAGGGGAAAAGGAAGAGATGGAGAA  100

seq1  CGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  139
      |||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  139