BAC Information

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BAC

Clone NameB6Ng01-341L15
Chromosome9 (Build37)
Map Location 95,017,694 - 95,118,705
singlet/doubletdoublet
Overlap geneSlc9a9
Upstream geneLOC384967, EG384968, 1190002N15Rik, EG667601
Downstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5, Tfdp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341L15.bB6Ng01-341L15.g
ACCGA125026GA125027
length1,1981,029
definitionB6Ng01-341L15.b B6Ng01-341L15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,017,694 - 95,018,897)(95,117,677 - 95,118,705)
sequence
gaattcacataatgaaactaagtcctagtaatatttcaccgccccaaagg
ttctaagcagtaagaattggaaaggaatttttggctttaatgggaaaagt
gaaccttttgttagtcacttcgcttgctttcctgctaagaagaaaaaaaa
aaaaaaaccaacgttgaagcattcatttggctatggttgggtatgagagc
atccagagattttaatatgtctaataaaatccaccaaagaatggaggcgc
accgggaaagggggagcattatggtccacaagagatgcatttactctgaa
agtggagctagatgctcgctgtaaatgaggagcccagagtgagatgttcg
agggcacagctgggaatatgtgcggagctcactttcatttccatttgaat
accacagaggaagcgctccgctcacttagaattaaaaagtacatcaagaa
tgcaaaatgtcatataaaattttaaccatactttttagctgcttttgagt
cccttcactggcttttcggcgctccgctttcagataacgtcttggccttc
tgtgatgtgtgcacatctgctcttggcctcctctctctgcagctacctgt
gcatcagctctacctgcctcctgcgcgtcttcttcctgtgaagtcttctc
tttctcttctgcatgtttccattttactttcctgttttcttcctgatcag
ctttccccattcttccttttgcttgttagctatcttcctttgctttcact
ctattaataaatcatatatatatatatatagaaccccaactgagaaaagc
agacagaaatgataccctttagtccagttgtggctcaatgtggctgttga
tatagtttctgggatgccttagtgcaggacctaagggtttgtccagagac
acaggtaagtaacaggcatgggtaagtctggaccctggtgcttctgacag
gaaatgctgataataataaaaattaatgtcgacatcatgtgataacatag
ggtttcttctgggggagccttggctgactggaaattactctgtaaaccag
gctaccttttggatctgctgcttctacttcagagtgctgtgattaaggtg
tgccagcgccaccacccagcctgccagctaatacattagaggctttctat
gcactgggttcaactaacctttataatcatccattagtccaattgaat
gaattcatggtggaaagaataggagggatggggtctggcagaggaagtag
gtcatctgggagcaagatgttgaaggtatttatggtcctacattcttctc
tccttctccttcctggctaccttggggtaaacagcctgctctgatacaca
ctcatgctgttgtgattttctgcttgaccttaggctggagcagcggagcc
agctcaccacagcttgaaaactctgcaaccaggagccagataaccttttc
ctcctatataagctgttttcctcgggtgttctgtcacagcatgagaaagc
taaatacatgtgttttgcttctttctttagggactcccattttccaggtg
ttcaagttccttgttgatattcatcactttctctaaaattcctttttata
gttttttctttttttattgaaaattttatctttttcatcttcagggtttt
ttttttcattgtgtttatttggtttcatagcctatgcaatttatccatga
tttctaaaatgatctttttcttttaaattgttttttggagtttgcgttat
tttatgattctgattaacgctgtccttttgtatcttgaatcatttgtgca
ttgctttctaactcagctaatgttctgattactctacggctatattttgg
ggtatactttccttgtgtatattatttctgtctttatttattttttcttg
taagagatacctgggaacctggcctccattctttttcttaatgttcattc
ctatgtgaaattattttttcttgaacttacagatggactcggatttcagg
aaaccattttccaatttcagagcccctcttctgtccaacatggcattaat
ggtggccttgtatccgagcttccctgcctgttgatcgcccaggtgacctt
cttccttttgattccagtcaaggcagtttttccaccctgtcctggtgact
ctatgctgaggacttagaggctatcgtttgccttaccctttatccccctt
cttgaagacctctccacttccttgataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_95017694_95018897
seq2: B6Ng01-341L15.b_46_1243

seq1  GAATTCACATAATGAAACTAAGTCCTAGTAATATTTCACCGCCCCAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATAATGAAACTAAGTCCTAGTAATATTTCACCGCCCCAAAGG  50

seq1  TTCTAAGCAGTAAGAATTGGAAAGGAATTTTTGGCTTTAATGGGAAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGCAGTAAGAATTGGAAAGGAATTTTTGGCTTTAATGGGAAAAGT  100

seq1  GAACCTTTTGTTAGTCACTTCGCTTGCTTTCCTGCTAAGAAGAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTTTGTTAGTCACTTCGCTTGCTTTCCTGCTAAGAAGAAAAAAAA  150

seq1  AAAAAAACCAACGTTGAAGCATTCATTTGGCTATGGTTGGGTATGAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCAACGTTGAAGCATTCATTTGGCTATGGTTGGGTATGAGAGC  200

seq1  ATCCAGAGATTTTAATATGTCTAATAAAATCCACCAAAGAATGGAGGCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAGATTTTAATATGTCTAATAAAATCCACCAAAGAATGGAGGCGC  250

seq1  ACCGGGAAAGGGGGAGCATTATGGTCCACAAGAGATGCATTTACTCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGAAAGGGGGAGCATTATGGTCCACAAGAGATGCATTTACTCTGAA  300

seq1  AGTGGAGCTAGATGCTCGCTGTAAATGAGGAGCCCAGAGTGAGATGTTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGCTAGATGCTCGCTGTAAATGAGGAGCCCAGAGTGAGATGTTCG  350

seq1  AGGGCACAGCTGGGAATATGTGCGGAGCTCACTTTCATTTCCATTTGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACAGCTGGGAATATGTGCGGAGCTCACTTTCATTTCCATTTGAAT  400

seq1  ACCACAGAGGAAGCGCTCCGCTCACTTAGAATTAAAAAGTACATCAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGAGGAAGCGCTCCGCTCACTTAGAATTAAAAAGTACATCAAGAA  450

seq1  TGCAAAATGTCATATAAAATTTTAACCATACTTTTTAGCTGCTTTTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATGTCATATAAAATTTTAACCATACTTTTTAGCTGCTTTTGAGT  500

seq1  CCCTTCACTGGCTTTTCGGCGCTCCGCTTTCAGATAACGTCTTGGCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCACTGGCTTTTCGGCGCTCCGCTTTCAGATAACGTCTTGGCCTTC  550

seq1  TGTGATGTGTGCACATCTGCTCTTGGCCTCCTCTCTCTGCAGCTACCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTGTGCACATCTGCTCTTGGCCTCCTCTCTCTGCAGCTACCTGT  600

seq1  GCATCAGCTCTACCTGCCTCCTGCGCGTCTTCTTCCTGTGAAGTCTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGCTCTACCTGCCTCCTGCGCGTCTTCTTCCTGTGAAGTCTTCTC  650

seq1  TTTCTCTTCTGCATGTTTCCATTTTACTTTCCTGTTTTCTTCCTGATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTCTGCATGTTTCCATTTTACTTTCCTGTTTTCTTCCTGATCAG  700

seq1  CTTTCCCCATTCTTCCTTTTGCTTGTTAGCTATCTTCCTTTGCTTTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCATTCTTCCTTTTGCTTGTTAGCTATCTTCCTTTGCTTTCACT  750

seq1  CTATTAATAAATCATATATATATATATATAGAACCCCAACTGAGAAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAATAAATCATATATATATATATATAGAACCCCAACTGAGAAAAGC  800

seq1  AGACAGAAATGATACCCTTTAGTCCAGTTGTGGCTCAATGTGGCTGTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAATGATACCCTTTAGTCCAGTTGTGGCTCAATGTGGCTGTTGA  850

seq1  TATAGTTTCTGGGATGCCTTAGTGCAGGACCTAAGGGTTTGTCCAGAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTCTGGGATGCCTTAGTGCAGGACCTAAGGGTTTGTCCAGAGAC  900

seq1  ACAGGTAAGTAACAGGCAT-GGTAAGTCTGGACCCTGGTGCTTCTGACAG  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACAGGTAAGTAACAGGCATGGGTAAGTCTGGACCCTGGTGCTTCTGACAG  950

seq1  GAAATGCTGATAATAATAAAAATTAATGTCGACATCATGTGATAACATAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCTGATAATAATAAAAATTAATGTCGACATCATGTGATAACATAG  1000

seq1  GGTTTC-TCT-GGGGAGCCTTGGCTGACCTGGAAATTACTCTGTAAACCA  1047
      |||||| ||| |||||||||||||||| ||||||||||||||||||||||
seq2  GGTTTCTTCTGGGGGAGCCTTGGCTGA-CTGGAAATTACTCTGTAAACCA  1049

seq1  GGCTACC-TTTGGATCTGCCTGCCTCTACCTCCAGAGTGCTGTGATTAAA  1096
      ||||||| |||||||||| |||| |||| || ||||||||||||||| ||
seq2  GGCTACCTTTTGGATCTG-CTGCTTCTA-CTTCAGAGTGCTGTGATT-AA  1096

seq1  GGTGTG-CAGCGCCACCACCCAG-CTG-CAGCTAATAACATTTAGA-GCC  1142
      |||||| |||||||||||||||| ||| |||||||| ||| ||||| || 
seq2  GGTGTGCCAGCGCCACCACCCAGCCTGCCAGCTAAT-ACA-TTAGAGGCT  1144

seq1  TTCTATGCACTGGGTTCTAAACTAAACACTTTTTATAATCATTCCATTAA  1192
      |||||||||||||||||  |||||| |    |||||||||| |||||| |
seq2  TTCTATGCACTGGGTTC--AACTAACC----TTTATAATCA-TCCATT-A  1186

seq1  GTCCCATTGAAT  1204
      |||| |||||||
seq2  GTCCAATTGAAT  1198

seq1: chr9_95117677_95118705
seq2: B6Ng01-341L15.g_74_1102 (reverse)

seq1  TCTATCAGGGGAAGTGGAGAGGTCTCAGAAAGGGGGGATAAAGGGGTTAG  50
      |||||||  ||||||||||||||||   | | |||||||||||||  || 
seq2  TCTATCA-AGGAAGTGGAGAGGTCTTCAAGAAGGGGGATAAAGGG--TAA  47

seq1  AGCAAACAGAAGGCTCTAAGTCCTCAGCATAGAGTCACCAGGACAGGGT-  99
       ||||||   || |||||||||||||||||||||||||||||||||||| 
seq2  GGCAAACGATAGCCTCTAAGTCCTCAGCATAGAGTCACCAGGACAGGGTG  97

seq1  GAAAAACTGCCCTGACTGGAATCAAAAGAAAGAAGGTCACCTGGGCGATC  149
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  GAAAAACTGCCTTGACTGGAATCAAAAGGAAGAAGGTCACCTGGGCGATC  147

seq1  AAACAGGCAGGGAAGCTCGGAATACAA-GCCACCATTTAATGCCATGTTT  198
       ||||||||||||||||||| |||||| ||||||| ||||||||||| ||
seq2  -AACAGGCAGGGAAGCTCGG-ATACAAGGCCACCA-TTAATGCCATG-TT  193

seq1  GAACAGAAGAGGGGCTCTGAAATTGG-AAATGGTTTCCTGAAATCCGAGT  247
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGACAGAAGAGGGGCTCTGAAATTGGAAAATGGTTTCCTGAAATCCGAGT  243

seq1  CCATCTGTAAGTTCAAG-AAAAATAATTTCACATAGGAATGAACATTAAG  296
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCATCTGTAAGTTCAAGAAAAAATAATTTCACATAGGAATGAACATTAAG  293

seq1  -AAAAGAATGGAGGCCAGGTT-CCAGGTATCTCTTACAAGAAAAAATAAA  344
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAAAGAATGGAGGCCAGGTTCCCAGGTATCTCTTACAAGAAAAAATAAA  343

seq1  T-AAGACAGAAATAATATACACAAGGAAAGTATACCCCAAAATATAGCCG  393
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACAGAAATAATATACACAAGGAAAGTATACCCCAAAATATAGCCG  393

seq1  TAGAGTAATCAGAACATTAGCTGAGTTAGAAAGCAATGCACAAATGATTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTAATCAGAACATTAGCTGAGTTAGAAAGCAATGCACAAATGATTC  443

seq1  AAGATACAAAAGGACAGCGTTAATCAGAATCATAAAATAACGCAAACTCC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACAAAAGGACAGCGTTAATCAGAATCATAAAATAACGCAAACTCC  493

seq1  AAAAAACAATTTAAAAGAAAAAGATCATTTTAGAAATCATGGATAAATTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAATTTAAAAGAAAAAGATCATTTTAGAAATCATGGATAAATTG  543

seq1  CATAGGCTATGAAACCAAATAAACACAATGAAAAAAAAAACCCTGAAGAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCTATGAAACCAAATAAACACAATGAAAAAAAAAACCCTGAAGAT  593

seq1  GAAAAAGATAAAATTTTCAATAAAAAAAGAAAAAACTATAAAAAGGAATT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGATAAAATTTTCAATAAAAAAAGAAAAAACTATAAAAAGGAATT  643

seq1  TTAGAGAAAGTGATGAATATCAACAAGGAACTTGAACACCTGGAAAATGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAAAGTGATGAATATCAACAAGGAACTTGAACACCTGGAAAATGG  693

seq1  GAGTCCCTAAAGAAAGAAGCAAAACACATGTATTTAGCTTTCTCATGCTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCTAAAGAAAGAAGCAAAACACATGTATTTAGCTTTCTCATGCTG  743

seq1  TGACAGAACACCCGAGGAAAACAGCTTATATAGGAGGAAAAGGTTATCTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAACACCCGAGGAAAACAGCTTATATAGGAGGAAAAGGTTATCTG  793

seq1  GCTCCTGGTTGCAGAGTTTTCAAGCTGTGGTGAGCTGGCTCCGCTGCTCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGTTGCAGAGTTTTCAAGCTGTGGTGAGCTGGCTCCGCTGCTCC  843

seq1  AGCCTAAGGTCAAGCAGAAAATCACAACAGCATGAGTGTGTATCAGAGCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAAGGTCAAGCAGAAAATCACAACAGCATGAGTGTGTATCAGAGCA  893

seq1  GGCTGTTTACCCCAAGGTAGCCAGGAAGGAGAAGGAGAGAAGAATGTAGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTACCCCAAGGTAGCCAGGAAGGAGAAGGAGAGAAGAATGTAGG  943

seq1  ACCATAAATACCTTCAACATCTTGCTCCCAGATGACCTACTTCCTCTGCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAAATACCTTCAACATCTTGCTCCCAGATGACCTACTTCCTCTGCC  993

seq1  AGACCCCATCCCTCCTATTCTTTCCACCATGAATTC  1029
      ||||||||||||||||||||||||||||||||||||
seq2  AGACCCCATCCCTCCTATTCTTTCCACCATGAATTC  1029