BAC Information

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BAC

Clone NameB6Ng01-341M19
Chromosome9 (Build37)
Map Location 27,045,156 - 27,183,636
singlet/doubletdoublet
Overlap geneIgsf9b
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3
Downstream geneSpata19, LOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341M19.bB6Ng01-341M19.g
ACCGA125078GA125079
length1,118516
definitionB6Ng01-341M19.b B6Ng01-341M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,045,156 - 27,046,221)(27,183,115 - 27,183,636)
sequence
ttgctcattggtgattgtccttagcttggtagagaggctttctacaaaag
acttaggctgaggctctgtagatgaaggccttctctgtgctccccatggt
ggtttcaatggaagagacagtctgtgtttatccatactgtttattgactg
ttcatcatggaaaatggatatgtaccaacttctcagagattaaatatctt
tttcagggaagaatgtctggaagggaagcttactgctaaaccctgggcct
caagatacctcattagcatggagaactctgtcacaggtcatgtttcttta
tgtggaaagtgtggcatgtgtcccaggccaggaatctggcagggagcagg
gaggtgcctgccatttcacataggtacctgggaaccagggtctcagacct
gcttctccttaccaagtttcctggcatggtccatcgtcacacactggaca
tgaactcgaatctcccaaactgtgagctaagtaaacctttcctcttttga
agttgatttagcactgatgtttgttatagtaacagaaagctgacacacca
tgcctggatagatgtccagtaaaagacatatggctatgaagttcagcctg
aggctctggaatgctgtctgtcccctggataccatgtggtcattatggcc
ttgaaatcaggacagctgtcactaactaatgagattgggcctacaaccat
tctctcttgaggaagatagaagaaggctcactgtgatcagtgtcttacaa
gtcttgggctcttatatcacatctttgcctttctagtgtactcagattca
accctggtcatcccagtacctcatccataaacagggatcaatagcatctc
tcccaaggctttaagcatttcttttatttaaaaatcagagagggtgacac
agctaaagtccacatgagatttcctttttcacgctctccgcgcaacagaa
gtaatattagtcagatttatatgggcatttcttgagagccagacttcttt
agaagctgtcttgtttctacgcatctaatcttgtgtgagaattctgtggg
ccattcctctcaatggaattccttgtttcttgcggtgccaagctgagtaa
gaatttcagttccgtggt

cagggtaggtagccttatttttctctgtctcttgaagacattccagaact
attactggagcataagggctggaaactgttgctgaccatttgtcattgtt
tcaggccaggtggcagagcagttgctgactagctgcctgaagcctaggtt
tttaggcctaatctcctgaactgtcaatttgaaccctgtcatggagtcag
cctgtcacatcaacacaaaataaactatggagtcaatgaaattcccatca
aaagtatattttctaaacacaaagaaattaaattagaaataatgaggaga
tttgggaaatccaaaatattttaaaagctaaacatgtttatccataatac
ctggataaaattatgaaattatgaaaacttgaacattttctgaagtaaat
tttcatgaacaatttgtagggtaaatacaaaagtatatggaatgtgcagt
atattcattcattctcccagtaccacaaaagagaaggaggaggaggaaag
gaggaggaggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_27045156_27046221
seq2: B6Ng01-341M19.b_105_1177

seq1  AAAAGACTTAGGCTGAGGCTCTGTAGATGAAGGCCTTCTCTGTGCTCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTTAGGCTGAGGCTCTGTAGATGAAGGCCTTCTCTGTGCTCCCC  50

seq1  ATGGTGGTTTCAATGGAAGAGACAGTCTGTGTTTATCCATACTGTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGTTTCAATGGAAGAGACAGTCTGTGTTTATCCATACTGTTTATT  100

seq1  GACTGTTCATCATGGAAAATGGATATGTACCAACTTCTCAGAGATTAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTCATCATGGAAAATGGATATGTACCAACTTCTCAGAGATTAAAT  150

seq1  ATCTTTTTCAGGGAAGAATGTCTGGAAGGGAAGCTTACTGCTAAACCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTCAGGGAAGAATGTCTGGAAGGGAAGCTTACTGCTAAACCCTG  200

seq1  GGCCTCAAGATACCTCATTAGCATGGAGAACTCTGTCACAGGTCATGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAAGATACCTCATTAGCATGGAGAACTCTGTCACAGGTCATGTTT  250

seq1  CTTTATGTGGAAAGTGTGGCATGTGTCCCAGGCCAGGAATCTGGCAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTGGAAAGTGTGGCATGTGTCCCAGGCCAGGAATCTGGCAGGGA  300

seq1  GCAGGGAGGTGCCTGCCATTTCACATAGGTACCTGGGAACCAGGGTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAGGTGCCTGCCATTTCACATAGGTACCTGGGAACCAGGGTCTCA  350

seq1  GACCTGCTTCTCCTTACCAAGTTTCCTGGCATGGTCCATCGTCACACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCTTCTCCTTACCAAGTTTCCTGGCATGGTCCATCGTCACACACT  400

seq1  GGACATGAACTCGAATCTCCCAAACTGTGAGCTAAGTAAACCTTTCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGAACTCGAATCTCCCAAACTGTGAGCTAAGTAAACCTTTCCTCT  450

seq1  TTTGAAGTTGATTTAGCACTGATGTTTGTTATAGTAACAGAAAGCTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTTGATTTAGCACTGATGTTTGTTATAGTAACAGAAAGCTGACA  500

seq1  CACCATGCCTGGATAGATGTCCAGTAAAAGACATATGGCTATGAAGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGCCTGGATAGATGTCCAGTAAAAGACATATGGCTATGAAGTTCA  550

seq1  GCCTGAGGCTCTGGAATGCTGTCTGTCCCCTGGATACCATGTGGTCATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGGCTCTGGAATGCTGTCTGTCCCCTGGATACCATGTGGTCATTA  600

seq1  TGGCCTTGAAATCAGGACAGCTGTCACTAACTAATGAGATTGGGCCTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGAAATCAGGACAGCTGTCACTAACTAATGAGATTGGGCCTACA  650

seq1  ACCATTCTCTCTTGAGGAAGATAGAAGAAGGCTCACTGTGATCAGTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCTCTCTTGAGGAAGATAGAAGAAGGCTCACTGTGATCAGTGTCT  700

seq1  TACAAGTCTTGGGCTCTTATATCACATCTTTGCCTTTCTAGTGTACTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTCTTGGGCTCTTATATCACATCTTTGCCTTTCTAGTGTACTCAG  750

seq1  ATTCAACCCTGGTCATCCCAGTACCTCATCCATAAACAGGGATCAATAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACCCTGGTCATCCCAGTACCTCATCCATAAACAGGGATCAATAGC  800

seq1  ATCTCTCCCAAGGCTTTAAGCATTTCTTTTATTTAAAAATCAGAGAGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCCAAGGCTTTAAGCATTTCTTTTATTTAAAAATCAGAGAGGGT  850

seq1  GACACAGCTAAAGTCCACATGAGAATTCCTTTTTCACGCTCTCCGCGC-A  899
      |||||||||||||||||||||||| ||||||||||||||||||||||| |
seq2  GACACAGCTAAAGTCCACATGAGATTTCCTTTTTCACGCTCTCCGCGCAA  900

seq1  CAGAAGTAATATTAGTCAAGATTTATA-GGGCATTTC-TGAGAGCCAGAC  947
      ||||||||||||||||| ||||||||| ||||||||| ||||||||||||
seq2  CAGAAGTAATATTAGTC-AGATTTATATGGGCATTTCTTGAGAGCCAGAC  949

seq1  TTCTTAAGAAGCTGTCTTGTTTCTACGCATCTAATC-TGTGTGAG-ATTC  995
      ||||| |||||||||||||||||||||||||||||| |||||||| ||||
seq2  TTCTTTAGAAGCTGTCTTGTTTCTACGCATCTAATCTTGTGTGAGAATTC  999

seq1  TGTGGG-CATT-CTCTCAGTGG-ATTCC-TGTTTC-TGCGGTGCCAAAGC  1040
      |||||| |||| |||||| ||| ||||| |||||| ||||||||| ||||
seq2  TGTGGGCCATTCCTCTCAATGGAATTCCTTGTTTCTTGCGGTGCC-AAGC  1048

seq1  TGAGGTAAGGAATTCAGTTCCGTGGT  1066
      ||| ||||| | ||||||||||||||
seq2  TGA-GTAAGAATTTCAGTTCCGTGGT  1073


seq1: chr9_27183115_27183636
seq2: B6Ng01-341M19.g_70_591 (reverse)

seq1  CCTCCTCCTCCTCCTCCTTTCCTCCTCCTCCTTCTCTTTTGTGGTACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCTCCTCCTCCTTTCCTCCTCCTCCTTCTCTTTTGTGGTACTGG  50

seq1  GAGAATGAATGAATATACTGCACATTCCATATACTTTTGTATTTACCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGAATGAATATACTGCACATTCCATATACTTTTGTATTTACCCTA  100

seq1  CAAATTGTTCATGAAAATTTACTTCAGAAAATGTTCAAGTTTTCATAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGTTCATGAAAATTTACTTCAGAAAATGTTCAAGTTTTCATAATT  150

seq1  TCATAATTTTATCCAGGTATTATGGATAAACATGTTTAGCTTTTAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATTTTATCCAGGTATTATGGATAAACATGTTTAGCTTTTAAAATA  200

seq1  TTTTGGATTTCCCAAATCTCCTCATTATTTCTAATTTAATTTCTTTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATTTCCCAAATCTCCTCATTATTTCTAATTTAATTTCTTTGTGT  250

seq1  TTAGAAAATATACTTTTGATGGGAATTTCATTGACTCCATAGTTTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAATATACTTTTGATGGGAATTTCATTGACTCCATAGTTTATTTT  300

seq1  GTGTTGATGTGACAGGCTGACTCCATGACAGGGTTCAAATTGACAGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGATGTGACAGGCTGACTCCATGACAGGGTTCAAATTGACAGTTCA  350

seq1  GGAGATTAGGCCTAAAAACCTAGGCTTCAGGCAGCTAGTCAGCAACTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTAGGCCTAAAAACCTAGGCTTCAGGCAGCTAGTCAGCAACTGCT  400

seq1  CTGCCACCTGGCCTGAAACAATGACAAATGGTCAGCAACAGTTTCCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACCTGGCCTGAAACAATGACAAATGGTCAGCAACAGTTTCCAGCC  450

seq1  CTTATGCTCCAGTAATAGTTCTGGAATGTCTTCAAGAGACAGAGAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCTCCAGTAATAGTTCTGGAATGTCTTCAAGAGACAGAGAAAAAT  500

seq1  AAGGCTACCTACCCTGGAATTC  522
      ||||||||||||||||||||||
seq2  AAGGCTACCTACCCTGGAATTC  522


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