BAC Information

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BAC

Clone NameB6Ng01-342D12
Chromosome9 (Build37)
Map Location 30,728,735 - 30,877,492
singlet/doubletdoublet
Overlap geneAdamts15, Adamts8, Zbtb44
Upstream geneHnt, Snx19, LOC666478
Downstream geneBC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342D12.bB6Ng01-342D12.g
ACCGA125367GA125368
length1,1301,033
definitionB6Ng01-342D12.b B6Ng01-342D12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,876,366 - 30,877,492)(30,728,735 - 30,729,766)
sequence
gaattcttttattttgtccaaaacagcacagcatcgacatcctcaacaat
acataaacctatatataaaatatagaatatcttcactatttctcctttat
atggcagcacaatagtatatgcaaatgaaagtgctgttggtgggacacga
ggacacttctctgagcaatgccctagttagccaggtgtcagcattcaatg
accaggaagagaaagtctcaggagagtttctgcaaagctgggtatacgta
cctcgttctgcaccctgccattccacatgcagcctgactcttctcaacca
cacctcttagcctctggagtggtgctataaaggtacaggaaatacctgcc
tgatactaatttttcactatgaaaattcaaaatggcttaaaaaagaatat
actggatttcagaagttatttaccttcatctgaaaaaaacaaaaacaaaa
acaaacccaccacaaatacttccaaaactacagggtttataacaccctgc
acttaggagtacacatttacttaggccttgtcaaactgtttaataacttc
tcattagccctcttctctcaggaaggtcaaccacagcctgagttcttttg
tatctgctgctgcccacttttaacaatgggaggaagaactgccatgttct
aagtcagctgcttttccttaagtctcaaagtttatgttctgtttcaatgt
taccttattgtatacatacagaagcaatctctcagctatgaaaaaacaaa
acaaaacatagaaccctccagttttagggtttacaaagggaacccttctt
taaaaattaaattaaatttaaacatatgagaccaagcacaggcactttcc
aaaaaaccaaaccccaggccaatcacagaattactcatagttatagcagg
cagctctgccttaggggggtcatccctgggcgcctcagcaggagcactgg
tctttggctgctcatgcagttcctcctccttctctgtaagcccaccaaga
agagcccaggggaaaaggtgctttccacaattctgggtggagaagacctg
tgaatcacaggcaatttgaacagaaagagtgctttcaaagtatgtttctc
caggaatcatactgaacaagggtctcttct
aaggaaccaatttaaagggggcattgggtggcacaaaggggctttggaga
tctaaactcaatgatccaaaaaaaaaaaaaaaaaaaaaaaaaaaatgggg
ttgcatccaaagaggtgacagatgaactcacctgtctggtgaagaggatg
gctgtgtcccagtactcagggtgcttatcgctcactttgttcagcttttt
ctgccaggcacagaagttgcgcagagtcagggccgcgttgcctgtgacct
tgggcccagtgtcacgatctcctaagagtagcaccttgaccaccacgatg
ttgatagggttgaggatgctggggtggcggtagagtcgcgccgccgtggc
cagcagcgtcagtagataatgttccaaatccgcgccgtgaaacttgacca
ttgactcgtccgccaccaccagtgtctccacgtaccgtggtatagacacg
aagcgcttggcgcgcccagacctgcggcggttgtggctctcccccgcgcc
cgtccgccgtggcttataagggtccagagccctcaggatggcggggttcc
agcccgaggccaccccgcaacgagaggtggggtctccggaaggccctaca
ggagcaccccggcgctggagaaggtgtgcgccctggctgtgacgctgcgc
ctctggcgcgctggtgttgggcagagggctaatgacatactccgcacctc
ggtagccaaaggctccgcggagacccccgcataggctcacagcagcaaag
gagtctggctccgcgttcacatacccggaatagaagcagcgtcgcaggtc
tagagagctgccagtgagcctctgcagcgggacacctagatactcagtag
caaaggcggagccaggaactgggcatctggcgtcaggtgtaagataaagt
tcctgctgaaagctggtgatctgaaaaatggagaccctgatccccgagtc
ctcggtacccctccttgttagtagtgcgcattgatgtcagtcccgtcgga
ttgacgaccaccttccactcttgctcgacttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_30876366_30877492
seq2: B6Ng01-342D12.b_48_1177 (reverse)

seq1  AGAAGAGACCCTTGTTCAGTATGA-TCTTGGAG-AACATACTTTTGAAAG  48
      |||||||||||||||||||||||| || ||||| ||||||| ||||||||
seq2  AGAAGAGACCCTTGTTCAGTATGATTCCTGGAGAAACATAC-TTTGAAAG  49

seq1  CAACTC-TTCTGTTCAAA-TGCCTGTGATTTCACAGGTCTCCTCAACCCA  96
      | |||| ||||||||||| ||||||||| ||||||||||| ||| |||||
seq2  C-ACTCTTTCTGTTCAAATTGCCTGTGA-TTCACAGGTCTTCTCCACCCA  97

seq1  GAATTGT-GAAAGCA-CTTTTCCCCTGGGCTC-TCTTGGTGGGCTTACAG  143
      ||||||| ||||||| |||||||||||||||| |||||||||||||||||
seq2  GAATTGTGGAAAGCACCTTTTCCCCTGGGCTCTTCTTGGTGGGCTTACAG  147

seq1  AGAAGGAGGAGGAACTGCATGAGCAGCCAAAGACCAGTGCTCCTGCTGAG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGGAGGAACTGCATGAGCAGCCAAAGACCAGTGCTCCTGCTGAG  197

seq1  GCGCCCAGGGATGACCCCCCTAAGGCAGAGCTGCCTGCTATAACTATTGA  243
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCGCCCAGGGATGACCCCCCTAAGGCAGAGCTGCCTGCTATAACTA-TGA  246

seq1  GTAATTCTGTGATTGGCCTGGGGTTTGGTTTTTTGGAAAGTGCCTGTGCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCTGTGATTGGCCTGGGGTTTGGTTTTTTGGAAAGTGCCTGTGCT  296

seq1  TGGTCTCATATGTTTAAATTTAATTTAATTTTTAAAGAAGGGTTCCCTTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCATATGTTTAAATTTAATTTAATTTTTAAAGAAGGGTTCCCTTT  346

seq1  GTAAACCCTAAAACTGGAGGGTTCTATGTTTTGTTTTGTTTTTTCATAGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCCTAAAACTGGAGGGTTCTATGTTTTGTTTTGTTTTTTCATAGC  396

seq1  TGAGAGATTGCTTCTGTATGTATACAATAAGGTAACATTGAAACAGAACA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATTGCTTCTGTATGTATACAATAAGGTAACATTGAAACAGAACA  446

seq1  TAAACTTTGAGACTTAAGGAAAAGCAGCTGACTTAGAACATGGCAGTTCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTGAGACTTAAGGAAAAGCAGCTGACTTAGAACATGGCAGTTCT  496

seq1  TCCTCCCATTGTTAAAAGTGGGCAGCAGCAGATACAAAAGAACTCAGGCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCATTGTTAAAAGTGGGCAGCAGCAGATACAAAAGAACTCAGGCT  546

seq1  GTGGTTGACCTTCCTGAGAGAAGAGGGCTAATGAGAAGTTATTAAACAGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGACCTTCCTGAGAGAAGAGGGCTAATGAGAAGTTATTAAACAGT  596

seq1  TTGACAAGGCCTAAGTAAATGTGTACTCCTAAGTGCAGGGTGTTATAAAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAGGCCTAAGTAAATGTGTACTCCTAAGTGCAGGGTGTTATAAAC  646

seq1  CCTGTAGTTTTGGAAGTATTTGTGGTGGGTTTGTTTTTGTTTTTGTTTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGTTTTGGAAGTATTTGTGGTGGGTTTGTTTTTGTTTTTGTTTTT  696

seq1  TTCAGATGAAGGTAAATAACTTCTGAAATCCAGTATATTCTTTTTTAAGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGAAGGTAAATAACTTCTGAAATCCAGTATATTCTTTTTTAAGC  746

seq1  CATTTTGAATTTTCATAGTGAAAAATTAGTATCAGGCAGGTATTTCCTGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAATTTTCATAGTGAAAAATTAGTATCAGGCAGGTATTTCCTGT  796

seq1  ACCTTTATAGCACCACTCCAGAGGCTAAGAGGTGTGGTTGAGAAGAGTCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTATAGCACCACTCCAGAGGCTAAGAGGTGTGGTTGAGAAGAGTCA  846

seq1  GGCTGCATGTGGAATGGCAGGGTGCAGAACGAGGTACGTATACCCAGCTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCATGTGGAATGGCAGGGTGCAGAACGAGGTACGTATACCCAGCTT  896

seq1  TGCAGAAACTCTCCTGAGACTTTCTCTTCCTGGTCATTGAATGCTGACAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAACTCTCCTGAGACTTTCTCTTCCTGGTCATTGAATGCTGACAC  946

seq1  CTGGCTAACTAGGGCATTGCTCAGAGAAGTGTCCTCGTGTCCCACCAACA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAACTAGGGCATTGCTCAGAGAAGTGTCCTCGTGTCCCACCAACA  996

seq1  GCACTTTCATTTGCATATACTATTGTGCTGCCATATAAAGGAGAAATAGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTCATTTGCATATACTATTGTGCTGCCATATAAAGGAGAAATAGT  1046

seq1  GAAGATATTCTATATTTTATATATAGGTTTATGTATTGTTGAGGATGTCG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATATTCTATATTTTATATATAGGTTTATGTATTGTTGAGGATGTCG  1096

seq1  ATGCTGTGCTGTTTTGGACAAAATAAAAGAATTC  1127
      ||||||||||||||||||||||||||||||||||
seq2  ATGCTGTGCTGTTTTGGACAAAATAAAAGAATTC  1130

seq1: chr9_30728735_30729766
seq2: B6Ng01-342D12.g_78_1104

seq1  AAGGAACCAATTTAAAGGGGGCATTGGGTGGCACAAAGGGGCTTTGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACCAATTTAAAGGGGGCATTGGGTGGCACAAAGGGGCTTTGGAGA  50

seq1  TCTAAACTCAATGATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAATGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACTCAATGATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAATGGGG  100

seq1  TTGCATCCAAAGAGGTGACAGATGAACTCACCTGTCTGGTGAAGAGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCCAAAGAGGTGACAGATGAACTCACCTGTCTGGTGAAGAGGATG  150

seq1  GCTGTGTCCCAGTACTCAGGGTGCTTATCGCTCACTTTGTTCAGCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTCCCAGTACTCAGGGTGCTTATCGCTCACTTTGTTCAGCTTTTT  200

seq1  CTGCCAGGCACAGAAGTTGCGCAGAGTCAGGGCCGCGTTGCCTGTGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGCACAGAAGTTGCGCAGAGTCAGGGCCGCGTTGCCTGTGACCT  250

seq1  TGGGCCCAGTGTCACGATCTCCTAAGAGTAGCACCTTGACCACCACGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCAGTGTCACGATCTCCTAAGAGTAGCACCTTGACCACCACGATG  300

seq1  TTGATAGGGTTGAGGATGCTGGGGTGGCGGTAGAGTCGCGCCGCCGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGGGTTGAGGATGCTGGGGTGGCGGTAGAGTCGCGCCGCCGTGGC  350

seq1  CAGCAGCGTCAGTAGATAATGTTCCAAATCCGCGCCGTGAAACTTGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCGTCAGTAGATAATGTTCCAAATCCGCGCCGTGAAACTTGACCA  400

seq1  TTGACTCGTCCGCCACCACCAGTGTCTCCACGTACCGTGGTATAGACACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCGTCCGCCACCACCAGTGTCTCCACGTACCGTGGTATAGACACG  450

seq1  AAGCGCTTGGCGCGCCCAGACCTGCGGCGGTTGTGGCTCTCCCCCGCGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGCTTGGCGCGCCCAGACCTGCGGCGGTTGTGGCTCTCCCCCGCGCC  500

seq1  CGTCCGCCGTGGCTTATAAGGGTCCAGAGCCCTCAGGATGGCGGGGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCGCCGTGGCTTATAAGGGTCCAGAGCCCTCAGGATGGCGGGGTTCC  550

seq1  AGCCCGAGGCCACCCCGCAACGAGAGGTGGGGTCTCCGGAAGGCCCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGAGGCCACCCCGCAACGAGAGGTGGGGTCTCCGGAAGGCCCTACA  600

seq1  GGAGCACCCCGGCGCTGGAGAAGGTGTGCGCCCTGGCTGTGACGCTGCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACCCCGGCGCTGGAGAAGGTGTGCGCCCTGGCTGTGACGCTGCGC  650

seq1  CTCTGGCGCGCTGGTGTTGGGCAGAGGGCTAATGACATACTCCGCACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCGCGCTGGTGTTGGGCAGAGGGCTAATGACATACTCCGCACCTC  700

seq1  GGTAGCCAAAGGCTCCGCGGAGACCCCCGCATAGGCTCACAGCAGCAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCCAAAGGCTCCGCGGAGACCCCCGCATAGGCTCACAGCAGCAAAG  750

seq1  GAGTCTGGCTCCGCGTTCACATACCCGGAATAGAAGCAGCGTCGCAGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGGCTCCGCGTTCACATACCCGGAATAGAAGCAGCGTCGCAGGTC  800

seq1  TAGAGAGCTGCCAGTGAGCCTCTGCAGCGGGACACCTAGATACTCAGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGCTGCCAGTGAGCCTCTGCAGCGGGACACCTAGATACTCAGTAG  850

seq1  CAAAGGCGGGAGCCAGGAACTGGGCATCTGGCGTCAGGTGT-AGATAAAA  899
      ||||||| ||||||||||||||||||||||||||||||||| ||||||| 
seq2  CAAAGGC-GGAGCCAGGAACTGGGCATCTGGCGTCAGGTGTAAGATAAAG  899

seq1  GTCCTGCTGAAAAGCT-GTGATCTGAAAAAT-GAGACCCTGATCCCCGGA  947
       |||||||| |||||| |||||||||||||| ||||||||||||||| ||
seq2  TTCCTGCTG-AAAGCTGGTGATCTGAAAAATGGAGACCCTGATCCCC-GA  947

seq1  GTCCTCCGTACCCCTCCT--GTAGTAGTGGCGGCCATTGATGTCCGGGTC  995
      |||||| |||||||||||   ||||||| |||  ||||||||||   |||
seq2  GTCCTCGGTACCCCTCCTTGTTAGTAGT-GCG--CATTGATGTC--AGTC  992

seq1  CCGTCGGATTGGAACGACCACCTCCCACTCTGGCTCG  1032
      |||||||||||  |||||||||| ||||||| |||||
seq2  CCGTCGGATTG--ACGACCACCTTCCACTCTTGCTCG  1027