BAC Information

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BAC

Clone NameB6Ng01-342D14
Chromosome9 (Build37)
Map Location 6,509,879 - 6,511,033
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919
Downstream geneLOC100039400, LOC100039418, EG547034, Dync2h1, LOC100039658, Dcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342D14.bB6Ng01-342D14.g
ACCGA125371GA125372
length1,1551,225
definitionB6Ng01-342D14.b B6Ng01-342D14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
tccatttcaaacccttcctttactgcactggagatgtccctgtttttcta
tcctgctcagatgagctttaatacttctgatgtgttctttttcagaacaa
aagttgcttgaattttggctgtttacatacagttcacagttctaatgttt
gaaatcctaaagaagtgaggtgtagtaggtaaaggtgcagtcagcttaag
accattttgttattacttagagttggccatgggcagcaatgcacccagtg
tttcctcagtatgtgaaatggtgaagaaaacaacagaagacacagtccta
tctctttattgatatatgatacaatatacactgagcatacatacatgcaa
atagtcacaacaaagccatacttctatgttcacacatatatttgcatatg
tgtgtgtatctgtatatacctcagagaattcatgaactcatgctttaact
gatggtaagatttgcttatcaaagtctttttacattgatcaacaacagct
taaacattttacagttttccaaaaactgtagcagagctgtgagcatggaa
ttcccaggtatgattagcaaaggattttctctcccagggaacaatttctc
atgtccctaccacatgattctttcttggctgtttgctgtgtcagactttg
actgagctcttaagtaatcctagtgtgaagaaagagatatacaggatccc
agactccaccgagactactctgcacaggtgtccagccggcccgggagggc
tttgcctgagcatctgtgggagacatcttggatcccggactccaccgaga
ctactctgcacagaggatgggtatccggccatcccgggagggctttacct
gagcatctccaggagacatcttggatcccagactccaccaagactagtct
gcataggtgagagtggtggactacagaagctaaaagcttctgggacaggt
cctgtttcgggtcttcatctcagccaggaggcaagtctaaatgccagata
ttcttgtgccacctttcctgaaagagaaagctgcctgcaggagagtacta
ttgaccaatgaaacctcaggagagagctagtatccccggtctgctggtta
gagaaatacggatcacagaggaatagctctacggagacaccctataaacc
tgact

gaattcttctgggtttttgtatgttcatgggcatctctttcttagggaac
ttttcttctataattttgttaaaaatatttactggccctttaagttgaaa
aatcttcattcttatctactcctatcatccgtaggtttagtcttctcatt
ttgtcctaagtttcctggatgttttgagataggatctttttgcattttgc
attttctttgattgttttgctgatgttctctatggcatcttctgcacctg
aaattctctcttccatctcttgtattctgttgctgatgctcacatatatg
tttccaaatttctttattagggtttctatctccagcattgcctcaccttg
tgttttctttattgtgtctacttccctttttggatctaatcgttttgttc
atttctatcacctgtttggttgtgttttcctgtttttctttaaggacttg
taactctttagcagtgttctcctgtatttctttaattgagttattaaagt
ccttcttgatgtcctctaccatcatcatgagatatgcttttaaatctggg
tctagcttttcaggtgtgttggggtgcccaggactggctgaggtgggaaa
gctgggttctgatgatggtgagtggtcttggtttctgttagtaagattcc
tacatttgcctttcaccgtctggtaatctctggaataagttgttatagtt
atctctggttagagcttgttcccctcgtgattctgttagcctctatcagc
agacctgggagattagatctctcctgagtttctgtgattagagcactctc
tgcaggcaagctctcctcttgcagggcaggtgcacagatatctggcgttt
ggacctttcttcctggcagaaattgaaaggcccgaaacagggcctgtctc
cgaatctgtgtagcttctgcctgtcccagaagctgttagcttctgtagtc
tacactctcacctgcgcagactagttttgggacgggtcaggaactagatg
gctcccccagatgctgtggtaaagtcctcccggtggggtggacactactc
cctctggcaaggagtgcccagatgtcttgatccggaaaagctgtctccca
ggtctgtgggctctgcctgtccgaagctatagctcgtagtctacctctca
cctggacgactgtccatgtttgattgtactggaatcagtagtctctaagt
catggagtcatgactcctccatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_6509879_6511033
seq2: B6Ng01-342D14.b_56_1210

seq1  TCCATTTCAAACCCTTCCTTTACTGCACTGGAGATGTCCCTGTTTTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCAAACCCTTCCTTTACTGCACTGGAGATGTCCCTGTTTTTCTA  50

seq1  TCCTGCTCAGATGAGCTTTAATACTTCTGATGTGTTCTTTTTCAGAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCAGATGAGCTTTAATACTTCTGATGTGTTCTTTTTCAGAACAA  100

seq1  AAGTTGCTTGAATTTTGGCTGTTTACATACAGTTCACAGTTCTAATGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCTTGAATTTTGGCTGTTTACATACAGTTCACAGTTCTAATGTTT  150

seq1  GAAATCCTAAAGAAGTGAGGTGTAGTAGGTAAAGGTGCAGTCAGCTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCTAAAGAAGTGAGGTGTAGTAGGTAAAGGTGCAGTCAGCTTAAG  200

seq1  ACCATTTTGTTATTACTTAGAGTTGGCCATGGGCAGCAATGCACCCAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTGTTATTACTTAGAGTTGGCCATGGGCAGCAATGCACCCAGTG  250

seq1  TTTCCTCAGTATGTGAAATGGTGAAGAAAACAACAGAAGACACAGTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCAGTATGTGAAATGGTGAAGAAAACAACAGAAGACACAGTCCTA  300

seq1  TCTCTTTATTGATATATGATACAATATACACTGAGCATACATACATGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTATTGATATATGATACAATATACACTGAGCATACATACATGCAA  350

seq1  ATAGTCACAACAAAGCCATACTTCTATGTTCACACATATATTTGCATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCACAACAAAGCCATACTTCTATGTTCACACATATATTTGCATATG  400

seq1  TGTGTGTATCTGTATATACCTCAGAGAATTCATGAACTCATGCTTTAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATCTGTATATACCTCAGAGAATTCATGAACTCATGCTTTAACT  450

seq1  GATGGTAAGATTTGCTTATCAAAGTCTTTTTACATTGATCAACAACAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTAAGATTTGCTTATCAAAGTCTTTTTACATTGATCAACAACAGCT  500

seq1  TAAACATTTTACAGTTTTCCAAAAACTGTAGCAGAGCTGTGAGCATGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTTTACAGTTTTCCAAAAACTGTAGCAGAGCTGTGAGCATGGAA  550

seq1  TTCCCAGGTATGATTAGCAAAGGATTTTCTCTCCCAGGGAACAATTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGTATGATTAGCAAAGGATTTTCTCTCCCAGGGAACAATTTCTC  600

seq1  ATGTCCCTACCACATGATTCTTTCTTGGCTGTTTGCTGTGTCAGACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCTACCACATGATTCTTTCTTGGCTGTTTGCTGTGTCAGACTTTG  650

seq1  ACTGAGCTCTTAAGTAATCCTAGTGTGAAGAAAGAGATATACAGGATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCTCTTAAGTAATCCTAGTGTGAAGAAAGAGATATACAGGATCCC  700

seq1  AGACTCCACCGAGACTACTCTGCACAGGTGTCCAGCCGGCCCGGGAGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCACCGAGACTACTCTGCACAGGTGTCCAGCCGGCCCGGGAGGGC  750

seq1  TTTGCCTGAGCATCTGTGGGAGACATCTTGGATCCCGGACTCCACCGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGAGCATCTGTGGGAGACATCTTGGATCCCGGACTCCACCGAGA  800

seq1  CTACTCTGCACAGAGGATGGGTATCCGGCCATCCCGGGAGGGCTTTACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTGCACAGAGGATGGGTATCCGGCCATCCCGGGAGGGCTTTACCT  850

seq1  GAGCATCTCCAGGAGACATCTTGGATCCCAGACTCCACCAAGACTAGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCTCCAGGAGACATCTTGGATCCCAGACTCCACCAAGACTAGTCT  900

seq1  GCATAGGTGAGAGT-GTGGACTACAGAAGCTAAAAGCTTCTGGGACAGGT  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCATAGGTGAGAGTGGTGGACTACAGAAGCTAAAAGCTTCTGGGACAGGT  950

seq1  CCTGTTTCGGGTCTTCATCTTCAGCCAGGAGGCAAGTCTAAATGCCAGAT  999
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCTGTTTCGGGTCTTCATC-TCAGCCAGGAGGCAAGTCTAAATGCCAGAT  999

seq1  AT--CTGTG-CACCTTCCCTGAAAGAGGAAAGCCTGCCTGCA-GAGAGTA  1045
      ||   |||| |||||| ||||||||| ||||| ||||||||| |||||||
seq2  ATTCTTGTGCCACCTTTCCTGAAAGA-GAAAG-CTGCCTGCAGGAGAGTA  1047

seq1  CTA-TGACCAATGAAA-CTCAGGAGAGAGCTAGTATCCCCGGTCTGCTGG  1093
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTATTGACCAATGAAACCTCAGGAGAGAGCTAGTATCCCCGGTCTGCTGG  1097

seq1  -TAGAGAATAACAGAATCACAAGAGGAATAAGCTCTAACCAGAGACA-AC  1141
       |||||||  || | ||||| |||||||| |||||||  | ||||||  |
seq2  TTAGAGAAATAC-GGATCAC-AGAGGAAT-AGCTCTA--CGGAGACACCC  1142

seq1  TATAAAAACTGACT  1155
      ||| ||| ||||||
seq2  TAT-AAACCTGACT  1155


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