BAC Information

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BAC

Clone NameB6Ng01-342G21
Chromosome9 (Build37)
Map Location 52,863,384 - 53,024,251
singlet/doubletdoublet
Overlap geneDdx10
Upstream geneRdx, 9830163H01Rik, Zc3h12c, LOC100042876, AI593442, Gm1715
Downstream geneExph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342G21.bB6Ng01-342G21.g
ACCGA125518GA125519
length1,1851,133
definitionB6Ng01-342G21.b B6Ng01-342G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,863,384 - 52,864,575)(53,023,120 - 53,024,251)
sequence
gaattcattgcaaagtcagctcagagggtccatttagcatctgtgcttcc
tttttaccaacggctgcagggtatccgtgcagcttcacactgatctgaat
cagatatgaaggcactacattctcccaaaaaggtccttgagaagcatcca
tagccaagctaaaaggagtaagcacaaaaggccaattccaggcacaggct
gtgacaagaggagtaagtgctaggcagaatcccacacatgttccctcacc
tgacagtcagaggcttccctgcctacctactggaccatctggagagtgaa
tagactgcttcctaaggagccataccagaagaaagcattggtgctgctgt
catgtgccccctacccccaccccaaacgttggtagggacctctatttcag
ccctggcaggtttcagaagacacactccttcacattcccatctcttttta
tagctcccattagtaacaagaggcatcagggtgattaaagtagtgttact
attagcagtgtctcattgacttatgacagcacaaacagaagacacatctt
aggatctagttaatgggatgcattaactgcacaataaagggtatgactgc
atccataagtaataaacttaaatcaatcttgactcctaaaaaatagataa
gaatgaaagatcttaatggatccaaacaggaaagcgggtgggtttttgct
cattcttcttttctgctttgggttgcttatttctttctttttcctaacaa
aggccttctctccagttctttttgcagagacctgacaagatttgtcacaa
cactcagcagctgactgatggctctcccactaataacagaaaagcatctt
ggctctaaaggcaaagggtaagtaagaattctgggattaaaggtaatccc
acagattgataatccaagagctggttatgagataggcttccttccagagt
caaggattgctgagttccagccattatccctccccttgggcacttgactg
actattccaggattttttcaccactgccaacttctgtctcctgggttttg
tggatgttgagtgcttttcaactcattcttgaagatgcagtagagactcc
ttcataaaggtactataccctagaattgagctctcactagttgggtaagt
gcctgcctaggtgacatgaagccgtgattcctgtc
gaattctttgttcagctctgagccccattttttaatggggttattggact
ttttggagtccaccttcatgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgacaggcatgcattttttaactagc
tttttacctgggtgttggaggtctgaactcagttcctccctcaggcttgc
tctgagttcactcatggtgtcacctcctcagcttgtcctctgactttttt
tttttctcccagagctgaggaccgaactcagggccttgcgcttgctaggc
aagcgctctaccagtgagctaaatccccaaccccgtcctctgacttttaa
catgtcttcagaggtgttacagatatggcagtttcaatggctgtcagcta
tcttattttgttaggatgtcacctttttatcttatatgccaataaagtct
gccaccatacatggtttggtttaatagctaaagggaatgcattaaaattt
atactgttttgcagtaaataaagatgaataactttgagtcatacaattct
gcatttaaacagtgaggaaggtatttagatttgagacccaacagataatt
agataaagaagtatctatatattcatatttcctttttgtttacaagaaag
ttatctaaaaataaagacaaaatattcaagtattcactggtctctgaaat
actgtctttatcccttatgaaacttggctgtcccttccatgtttctatcc
ctagtgtttagactggctgttgattcttcaagtttcacttaaagtgtcat
tatttctgggtagttgtctaaatatgtagactattagtttgaattctctg
tcatgctcttatgaatacatataaaatcctatattatgacaacccctgct
ccccacctttcccctaagacaggttttcttgtattagtcttggctgtcct
gactctgtagacaggctggccttgattcagagatcctatgcctcctgagt
gctggcattaataactgttttttatagcacctcagctttggttagtaggc
aaggaatgttcttgtttttctcacattcagcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_52863384_52864575
seq2: B6Ng01-342G21.b_49_1233

seq1  GAATTCATTGCAAAGTCAGCTCAGAGGGTCCATTTAGCATCTGTGCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCAAAGTCAGCTCAGAGGGTCCATTTAGCATCTGTGCTTCC  50

seq1  TTTTTACCAACGGCTGCAGGGTATCCGTGCAGCTTCACACTGATCTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACCAACGGCTGCAGGGTATCCGTGCAGCTTCACACTGATCTGAAT  100

seq1  CAGATATGAAGGCACTACATTCTCCCAAAAAGGTCCTTGAGAAGCATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATGAAGGCACTACATTCTCCCAAAAAGGTCCTTGAGAAGCATCCA  150

seq1  TAGCCAAGCTAAAAGGAGTAAGCACAAAAGGCCAATTCCAGGCACAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAAGCTAAAAGGAGTAAGCACAAAAGGCCAATTCCAGGCACAGGCT  200

seq1  GTGACAAGAGGAGTAAGTGCTAGGCAGAATCCCACACATGTTCCCTCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAGAGGAGTAAGTGCTAGGCAGAATCCCACACATGTTCCCTCACC  250

seq1  TGACAGTCAGAGGCTTCCCTGCCTACCTACTGGACCATCTGGAGAGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTCAGAGGCTTCCCTGCCTACCTACTGGACCATCTGGAGAGTGAA  300

seq1  TAGACTGCTTCCTAAGGAGCCATACCAGAAGAAAGCATTGGTGCTGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGCTTCCTAAGGAGCCATACCAGAAGAAAGCATTGGTGCTGCTGT  350

seq1  CATGTGCCCCCTACCCCCACCCCAAACGTTGGTAGGGACCTCTATTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCCCCCTACCCCCACCCCAAACGTTGGTAGGGACCTCTATTTCAG  400

seq1  CCCTGGCAGGTTTCAGAAGACACACTCCTTCACATTCCCATCTCTTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCAGGTTTCAGAAGACACACTCCTTCACATTCCCATCTCTTTTTA  450

seq1  TAGCTCCCATTAGTAACAAGAGGCATCAGGGTGATTAAAGTAGTGTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCCATTAGTAACAAGAGGCATCAGGGTGATTAAAGTAGTGTTACT  500

seq1  ATTAGCAGTGTCTCATTGACTTATGACAGCACAAACAGAAGACACATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAGTGTCTCATTGACTTATGACAGCACAAACAGAAGACACATCTT  550

seq1  AGGATCTAGTTAATGGGATGCATTAACTGCACAATAAAGGGTATGACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTAGTTAATGGGATGCATTAACTGCACAATAAAGGGTATGACTGC  600

seq1  ATCCATAAGTAATAAACTTAAATCAATCTTGACTCCTAAAAAATAGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAAGTAATAAACTTAAATCAATCTTGACTCCTAAAAAATAGATAA  650

seq1  GAATGAAAGATCTTAATGGATCCAAACAGGAAAGCGGGTGGGTTTTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAGATCTTAATGGATCCAAACAGGAAAGCGGGTGGGTTTTTGCT  700

seq1  CATTCTTCTTTTCTGCTTTGGGTTGCTTATTTCTTTCTTTTTCCTAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCTTTTCTGCTTTGGGTTGCTTATTTCTTTCTTTTTCCTAACAA  750

seq1  AGGCCTTCTCTCCAGTTCTTTTTGCAGAGACCTGACAAGATTTGTCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTCTCTCCAGTTCTTTTTGCAGAGACCTGACAAGATTTGTCACAA  800

seq1  CACTCAGCAGCTGACTGATGGCTCTCCCACTAATAACAGAAAAGCATCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGCAGCTGACTGATGGCTCTCCCACTAATAACAGAAAAGCATCTT  850

seq1  GGCTCTAAAAGGCAAAGGGTAAGTAAGAAATTCTGGAATTAAAGGTAATC  900
      |||||| |||||||||||||||||||| |||||||| |||||||||||||
seq2  GGCTCT-AAAGGCAAAGGGTAAGTAAG-AATTCTGGGATTAAAGGTAATC  898

seq1  CCACAGATTGATAATCCAAGAGCTGGTTATGAGATAGGCTTCCTTCCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGATTGATAATCCAAGAGCTGGTTATGAGATAGGCTTCCTTCCAGA  948

seq1  GTCAAGGATTGCTGAGTTCCAGCCA-TATCCCTCCCCTTGGGCACTTGAA  999
      ||||||||||||||||||||||||| |||||||||||||||||||||| |
seq2  GTCAAGGATTGCTGAGTTCCAGCCATTATCCCTCCCCTTGGGCACTTG-A  997

seq1  CTGACTATTCCAAGAATTTTTTTCAACCACTGCCAACTTCTGTCTCCTTG  1049
      |||||||||||| ||  ||||||| ||||||||||||||||||||||| |
seq2  CTGACTATTCCAGGA--TTTTTTC-ACCACTGCCAACTTCTGTCTCCTGG  1044

seq1  GTTTTGTGGATG-TGAGTGCTTTCTAACTCATCCTTGAAGATGGCAGTAA  1098
      |||||||||||| ||||||||||  ||||||| ||||||||| ||||| |
seq2  GTTTTGTGGATGTTGAGTGCTTTTCAACTCATTCTTGAAGAT-GCAGT-A  1092

seq1  GAGAACTCTTTCATAAA-GTACT-TATCCTAGATATTGAGCTCTCACTAA  1146
      ||| |||| |||||||| ||||| || |||||| |||||||||||||| |
seq2  GAG-ACTCCTTCATAAAGGTACTATACCCTAGA-ATTGAGCTCTCACT-A  1139

seq1  GTTGGTAAAGTGCTTGCCTAGTGTG-CATGAAGCCTTGATTTCTGTC  1192
      |||||  |||||| ||||||| ||| ||||||||| ||||| |||||
seq2  GTTGGGTAAGTGCCTGCCTAG-GTGACATGAAGCCGTGATTCCTGTC  1185

seq1: chr9_53023120_53024251
seq2: B6Ng01-342G21.g_68_1200 (reverse)

seq1  GTGCTGAAATGGTGAG-AAAACA--GACATTCTCCTTG-CTACTAA-CAA  45
      ||||||||   ||||| ||||||   ||||  |||||| ||||||| |||
seq2  GTGCTGAA--TGTGAGAAAAACAAGAACAT--TCCTTGCCTACTAACCAA  46

seq1  AGCTGAGTGCCTAT-AAAAACAGTTATTAATGCCAGCACTCAGGAGGCAT  94
      |||||||   |||| |||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGTGCTATAAAAAACAGTTATTAATGCCAGCACTCAGGAGGCAT  96

seq1  AGGATCTCTGAATTCAAGGCCAGCCTGGTCTACAGAGTTCCAGGACAGCC  144
      |||||||||||| ||||||||||||| |||||||||||  ||||||||||
seq2  AGGATCTCTGAA-TCAAGGCCAGCCT-GTCTACAGAGT--CAGGACAGCC  142

seq1  AAGACT-ATACAAGAAACCCTGTCTTAGGGG-AAGGTGGGGAGCAGGGGT  192
      |||||| |||||||||| ||||||||||||| ||||||||||||||||||
seq2  AAGACTAATACAAGAAAACCTGTCTTAGGGGAAAGGTGGGGAGCAGGGGT  192

seq1  TGTCATAATATAGGATTTTATATGTATTCATAAGAGCATGACAGAGAATT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAATATAGGATTTTATATGTATTCATAAGAGCATGACAGAGAATT  242

seq1  CAAACTAATAGTCTACATATTTAGACAACTACCCAGAAATAATGACACTT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAATAGTCTACATATTTAGACAACTACCCAGAAATAATGACACTT  292

seq1  TAAGTGAAACTTGAAGAATCAACAGCCAGTCT-AACACTAGGGATAGAAA  341
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAAGTGAAACTTGAAGAATCAACAGCCAGTCTAAACACTAGGGATAGAAA  342

seq1  CATGGAAGGGACAGCCAAGTTTCATAAGGGATAAAGACAGTATTTCAGAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAGGGACAGCCAAGTTTCATAAGGGATAAAGACAGTATTTCAGAG  392

seq1  ACCAGTGAATACTTGAATATTTTGTCTTTATTTTTAGATAACTTTCTTGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGAATACTTGAATATTTTGTCTTTATTTTTAGATAACTTTCTTGT  442

seq1  AAACAAAAAGGAAATATGAATATATAGATACTTCTTTATCTAATTATCTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAGGAAATATGAATATATAGATACTTCTTTATCTAATTATCTG  492

seq1  TTGGGTCTCAAATCTAAATACCTTCCTCACTGTTTAAATGCAGAATTGTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCTCAAATCTAAATACCTTCCTCACTGTTTAAATGCAGAATTGTA  542

seq1  TGACTCAAAGTTATTCATCTTTATTTACTGCAAAACAGTATAAATTTTAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAAAGTTATTCATCTTTATTTACTGCAAAACAGTATAAATTTTAA  592

seq1  TGCATTCCCTTTAGCTATTAAACCAAACCATGTATGGTGGCAGACTTTAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCCCTTTAGCTATTAAACCAAACCATGTATGGTGGCAGACTTTAT  642

seq1  TGGCATATAAGATAAAAAGGTGACATCCTAACAAAATAAGATAGCTGACA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATATAAGATAAAAAGGTGACATCCTAACAAAATAAGATAGCTGACA  692

seq1  GCCATTGAAACTGCCATATCTGTAACACCTCTGAAGACATGTTAAAAGTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGAAACTGCCATATCTGTAACACCTCTGAAGACATGTTAAAAGTC  742

seq1  AGAGGACGGGGTTGGGGATTTAGCTCACTGGTAGAGCGCTTGCCTAGCAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACGGGGTTGGGGATTTAGCTCACTGGTAGAGCGCTTGCCTAGCAA  792

seq1  GCGCAAGGCCCTGAGTTCGGTCCTCAGCTCTGGGAGAAAAAAAAAAAGTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAAGGCCCTGAGTTCGGTCCTCAGCTCTGGGAGAAAAAAAAAAAGTC  842

seq1  AGAGGACAAGCTGAGGAGGTGACACCATGAGTGAACTCAGAGCAAGCCTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACAAGCTGAGGAGGTGACACCATGAGTGAACTCAGAGCAAGCCTG  892

seq1  AGGGAGGAACTGAGTTCAGACCTCCAACACCCAGGTAAAAAGCTAGTTAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGAACTGAGTTCAGACCTCCAACACCCAGGTAAAAAGCTAGTTAA  942

seq1  AAAATGCATGCCTGTCAAAAGACACCGTCAATAAGACAAAAAGGCCACCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCATGCCTGTCAAAAGACACCGTCAATAAGACAAAAAGGCCACCA  992

seq1  ACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAAT  1042

seq1  ATCCAATATATATAAAGAACTCATGAAGGTGGACTCCAAAAAGTCCAATA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATATATATAAAGAACTCATGAAGGTGGACTCCAAAAAGTCCAATA  1092

seq1  ACCCCATTAAAAAATGGGGCTCAGAGCTGAACAAAGAATTC  1132
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATTAAAAAATGGGGCTCAGAGCTGAACAAAGAATTC  1133