BAC Information

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BAC

Clone NameB6Ng01-342G23
Chromosome9 (Build37)10 (Build37)
Map Location 82,276,065 - 82,276,347129,787,636 - 129,788,800
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039038, Htr1b, LOC671392, 4930486G11Rik, LOC100039085
Downstream geneIrak1bp1, Phip, LOC100039144, Hmgn3, LOC100039159
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342G23.bB6Ng01-342G23.g
ACCGA125522GA125523
length8831,150
definitionB6Ng01-342G23.b B6Ng01-342G23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,276,065 - 82,276,347)(129,787,636 - 129,788,800)
sequence
gaattcctgatcttttcaagacttttatcatgaaggggtgttggagtttg
tcaaatgctttctccacatctaaagagatgatcatgtggtttttgtcttt
gagtttgtttatatggtggattatgttgatggatttccatatattaaacc
atccctgcatccctgggatgaaggctacttgatcatgacggatgattgtt
ttgatgtattcttggattcggttagcgaaaattttattgagtatttctgc
atcgatattcataagggaaattggtctgaagttctctgtctttgttgggt
cttcatgtggtttaggtatcagagtaattgtggcttcatagaatgaattg
ggtagagtaccttctgtttcaattttgtagaatagtttgaggagtattgg
tataaagtcttctttgaaagtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaatgactgcttctatttct
ttaggggatatggggctgattagatcattaatctgatcctgatttaactt
tggtacctggtatctatctagaaaattgtccatttcatccaggttgttcc
aattttgttgagtatagccttttgtagtaggatctgatgatgttttgcat
tttcctcaggttctgtttgttatgtctccttttttcatttctgattttgt
ttaatttaggatactgtcccctgtgcccctctagtgagtctggctaaggg
tttatctatcttgttgatttttctcaaaagaacccagctcctggtttggt
tggttctttgaatagttctttttatttccacttggatgatttcatcactg
agttgattattttctgcatctactcctcttggg
gaattcagtgggcagtgcatgtcttagaaaagctgggcatactccagggg
gcatggccggcagggaattgggggcagcaggaagggtctaacctggaagc
tcctagtgtagcaggcctggtgaaggcaggcagagcagtggccagtacaa
tggagatgaggagggcagcacacagttccatttttttatgttttaaaata
atttcagtatttaacttttttaatatgctataaagaagcctgcaaatttt
cttacttttgctcttgaagggcagttattatgcattgaaagtgtttccag
ttttctttttttattatcctttatatatttgcactatattcatgcactgt
atgtggatgtttcagttaacaacaagctgcatacggtcctctaaggttag
ttatcaggtaacatgtagatagagctcacatactcattataaagtccagt
gttcaaaggctcaatccaagctgattctcaaaaacaaccaacaaaatacc
ttccagattacaacctgataactatagaatgagtatattatatttaggta
gtaatagtgaaatttgtttttgcagaaattagaattttaaccagtcattt
taatgtaaatcttactgaattgtagcatatagatcaacagcattttaatt
ttactttaaagcatattaagttattatttttactgaaaaaattaattagt
atgagttaatactgttgaatgaattttcacagaacattaccagcatttta
aaagccttttaaatttttggtcattttccattcattcttctgccttacag
gataatcaatatcttgacataacattatacacaagttatggtattttctg
aactgttttctttgactttatattatttgtaatgttcatctatgcatttt
tgtgaagccatcaacctccttttttattattgtgcagtattaacttacac
acttatatacatttttttcacttcaataatagagatcttggctttttctc
tggcttatttgactagtttctttgctgaataatataacagacattttcta
ttgagtgtaaagtgaaataatatcgttcattggtaattctgatgcatagt
aaatacactgagatgctgcctctatcaaatctttcaaatatgaacctttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_82276065_82276347
seq2: B6Ng01-342G23.b_468_931 (reverse)

seq1  CCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAA  50
      |||||||||||||||| |||| |||||||| ||||||| | |||||||| 
seq2  CCCAAGAGGAGTAGAT-GCAGAAAATAATC-AACTCAGTGATGAAATCAT  48

seq1  CCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAATGAGGAGTT  100
      ||||||||||| || |||||||||||||||||  |||||||  ||||| |
seq2  CCAAGTGGAAATAAAAAGAACTATTCAAAGAACCAACCAAACCAGGAGCT  98

seq1  --------------------------------------------------  100
                                                        
seq2  GGGTTCTTTTGAGAAAAATCAACAAGATAGATAAACCCTTAGCCAGACTC  148

seq1  --------------------------------------------------  100
                                                        
seq2  ACTAGAGGGGCACAGGGGACAGTATCCTAAATTAAACAAAATCAGAAATG  198

seq1  --------------------------------------------------  100
                                                        
seq2  AAAAAAGGAGACATAACAAACAGAACCTGAGGAAAATGCAAAACATCATC  248

seq1  --------------------------------------------TGGATG  106
                                                  ||||||
seq2  AGATCCTACTACAAAAGGCTATACTCAACAAAATTGGAACAACCTGGATG  298

seq1  AAATGGACAAATTTCTAGACAGATACTAGGTGTCAAAGTGAAATCAGGAT  156
      |||||||||| |||||||| |||||| ||||  |||||| ||||||||||
seq2  AAATGGACAATTTTCTAGATAGATACCAGGTACCAAAGTTAAATCAGGAT  348

seq1  CAGATTAATGATCTAAACAGTCCTATATCCCCTAAAGAAAT---AGCAGT  203
      |||||||||||||||| ||| || |||||||||||||||||   ||||||
seq2  CAGATTAATGATCTAATCAGCCCCATATCCCCTAAAGAAATAGAAGCAGT  398

seq1  CATTAATAGTCTCCCAACCAAAAAAAAAAAAAAAAAAAAAGCCCAGGGCC  253
      |||||||||||||||||||              |||||||||||||| ||
seq2  CATTAATAGTCTCCCAACC--------------AAAAAAAGCCCAGGACC  434

seq1  AGATGGATTTAGTGCAGAGTTCTATCAGAC  283
      |||||| |||||||||||||||||||||||
seq2  AGATGGGTTTAGTGCAGAGTTCTATCAGAC  464

seq1: chr10_129787636_129788800
seq2: B6Ng01-342G23.g_65_1214

seq1  GAATTCAGTGGGCAGTGCATGTCTTAGAAAAGCTGGGCATACTCCAGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGGCAGTGCATGTCTTAGAAAAGCTGGGCATACTCCAGGGG  50

seq1  GCATGGCCGGCAGGGAATTGGGGGCAGCAGGAAGGGTCTAACCTGGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCCGGCAGGGAATTGGGGGCAGCAGGAAGGGTCTAACCTGGAAGC  100

seq1  TCCTAGTGTAGCAGGCCTGGTGAAGGCAGGCAGAGCAGTGGCCAGTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTGTAGCAGGCCTGGTGAAGGCAGGCAGAGCAGTGGCCAGTACAA  150

seq1  TGGAGATGAGGAGGGCAGCACACAGTTCCATTTTTTTATGTTTTAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATGAGGAGGGCAGCACACAGTTCCATTTTTTTATGTTTTAAAATA  200

seq1  ATTTCAGTATTTAACTTTTTTAATATGCTATAAAGAAGCCTGCAAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTATTTAACTTTTTTAATATGCTATAAAGAAGCCTGCAAATTTT  250

seq1  CTTACTTTTGCTCTTGAAGGGCAGTTATTATGCATTGAAAGTGTTTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTTTGCTCTTGAAGGGCAGTTATTATGCATTGAAAGTGTTTCCAG  300

seq1  TTTTCTTTTTTTATTATCCTTTATATATTTGCACTATATTCATGCACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTTTATTATCCTTTATATATTTGCACTATATTCATGCACTGT  350

seq1  ATGTGGATGTTTCAGTTAACAACAAGCTGCATACGGTCCTCTAAGGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATGTTTCAGTTAACAACAAGCTGCATACGGTCCTCTAAGGTTAG  400

seq1  TTATCAGGTAACATGTAGATAGAGCTCACATACTCATTATAAAGTCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGGTAACATGTAGATAGAGCTCACATACTCATTATAAAGTCCAGT  450

seq1  GTTCAAAGGCTCAATCCAAGCTGATTCTCAAAAACAACCAACAAAATACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGGCTCAATCCAAGCTGATTCTCAAAAACAACCAACAAAATACC  500

seq1  TTCCAGATTACAACCTGATAACTATAGAATGAGTATATTATATTTAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATTACAACCTGATAACTATAGAATGAGTATATTATATTTAGGTA  550

seq1  GTAATAGTGAAATTTGTTTTTGCAGAAATTAGAATTTTAACCAGTCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGTGAAATTTGTTTTTGCAGAAATTAGAATTTTAACCAGTCATTT  600

seq1  TAATGTAAATCTTACTGAATTGTAGCATATAGATCAACAGCATTTTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAAATCTTACTGAATTGTAGCATATAGATCAACAGCATTTTAATT  650

seq1  TTACTTTAAAGCATATTAAGTTATTATTTTTACTGAAAAAATTAATTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTAAAGCATATTAAGTTATTATTTTTACTGAAAAAATTAATTAGT  700

seq1  ATGAGTTAATACTGTTGAATGAATTTTCACAGAACATTACCAGCATTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTAATACTGTTGAATGAATTTTCACAGAACATTACCAGCATTTTA  750

seq1  AAAGCCTTTTAAATTTTTGGTCATTTTCCATTCATTCTTCTGCCTTACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTTTAAATTTTTGGTCATTTTCCATTCATTCTTCTGCCTTACAG  800

seq1  GATAATCAATATCTTGACATAACATTATACACAAGTTATGGTATTTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATCAATATCTTGACATAACATTATACACAAGTTATGGTATTTTCTG  850

seq1  AACTGTTTTCTTTGACTTTATATTATTTGTAATGTTCATCTATGCATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTTTCTTTGACTTTATATTATTTGTAATGTTCATCTATGCATTTT  900

seq1  TGTGAAGCCATCAACCTCCTTTTTTATTATTGTGCAGTATTAACTTACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGCCATCAACCTCCTTTTTTATTATTGTGCAGTATTAACTTACAC  950

seq1  ACTTATTATAACATTTTTTTCACTTTCCAATAATTAGAGATTCTTTGGCT  1000
      ||||| ||| |||||||||||||||  |||||| |||||||   ||||||
seq2  ACTTA-TAT-ACATTTTTTTCACTT--CAATAA-TAGAGAT--CTTGGCT  993

seq1  TTTTCTCTGGCTTATTTTGACTAGTTTTCTTTTGCTGAAT-ATAT-ACAG  1048
      |||||||||||||| ||||||||||||   |||||||||| |||| ||||
seq2  TTTTCTCTGGCTTA-TTTGACTAGTTT--CTTTGCTGAATAATATAACAG  1040

seq1  ACA-TTTCTATTGAGTGTAAAAGTGAAATAATATCGTTTTAATTGTAATT  1097
      ||| |||||||||||||| ||||||||||||||||| || | | ||||||
seq2  ACATTTTCTATTGAGTGT-AAAGTGAAATAATATCG-TTCATTGGTAATT  1088

seq1  CTGATG-ATAGTAAATACACTGAAGAAATTGCTG-CTCTAATCAAAAATC  1145
      |||||| ||||||||||||||| |||   ||||| |||| |||  |||||
seq2  CTGATGCATAGTAAATACACTG-AGA---TGCTGCCTCT-ATC--AAATC  1131

seq1  TTTCAAAATATGAAACTTTT  1165
      |||| ||||||||| |||||
seq2  TTTC-AAATATGAACCTTTT  1150