BAC Information

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BAC

Clone NameB6Ng01-342O03
Chromosome9 (Build37)
Map Location 24,538,736 - 24,539,567
singlet/doubletsinglet
Overlap geneTbx20
Upstream geneLOC100040866, LOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4
Downstream geneLOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342O03.bB6Ng01-342O03.g
ACCGA125823GA125824
length9821,213
definitionB6Ng01-342O03.b B6Ng01-342O03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagagaacaactgagggagaggaagaggcgatggcttaagggaag
gaaacccagagatctataaagagtttttttttctgggtgttctgaaagtt
gctaaacacaattatgtggaggaatttccagaaggtggaagcagaaagtg
tctaaagggactgcaggatattgacagtgtgattcacatgggcatgagtt
ttgtctgacaggacattggcagtacttcagaaaatttgtttcatgagtga
gaaaatagtccttggttaggtacaatcctatctaagacatcgtggaagaa
aaactacaaactatttccaacgaaagtaaccaaatcccacagcaaggttt
cagactatgcaccagaatatgaggctatgcaatgcctgacaagggtctgt
tcacaaagcccggtgtctaggctgaatctaaatgccagcacagaaagaaa
gagacctgggatgtacatgcatgaaagaagatgatcgatcatgagggcaa
actaactgaaaataaatgtagcttaagtaatatagatattataataaatg
taatcatatagttgccatggctacgtttcatatatgcagaaagttagaca
tagaagtgataaagaacagatccctatcaaattctgaaagtgaaaactac
tactgtttagaaggtgaactatgagctaagtgagagtagggacagatagg
tactgcagttgaaaagatttgtgaagttgaagacagtaacaggaactgcc
caaagtgaaagagagcaaagagactacttagaaagcaaactgagctcaaa
gaggaaccatatgtatgtaactggagaccctggaaggtcacgggaggatg
ggaaaagaaataccttattttcaaatttaaaaacaattagacacacaatc
caaaagtccaacaaggttgagttcaagaagcaaaagaaatggtgaatgtg
atgtcataatcaaatggctgagatcaacgcaa

gaattccttataaccccatggtccaaggaatagttgaacgtgctcatcgc
accttaaagaattggctttttaagacaaaacaggggcagttatatccccc
aaggtcaccaaaggcacatcttgcctttgccttatttgttctaaattttt
tgcaaactgatattaaaggtcagtctgcagcggatcgccactggcatcca
gttacttctaattcttatgcattggtaaaatggaaggacccactaactaa
caaatggaagggtccagatccagttctaatctggggaaggggctctgtgt
tttttcacgaaaagaagatggagcgtatggctgcctgagagattaattcg
tcagctggacacagatcctgaatcttcttgtaagtaacactctgagggct
aaaaattcctcttttgcctagaagtcagttgggaacacaggctcccagga
aagcggtggttttcttgcaactctcagagccagctcccccacaaggaggc
cggagactgagcttgagccttgctaatttgcaactgaataaagtacctgg
acttccccaaaagaagctttgcattgttaccttctcattgtctggatctt
gtttttcaagcaggtcaatcaacacccttcaggctgactgcagagggcat
gcatccccgcccccaagagcgtgaagctactaattttcattctgaagaca
ttccagcacatattgtggctttcagtctgatttgtgattaagatttgcta
ctagggctagaaaggcagaaatttcaaatgttagaagaatatggttttta
ttctgataagacgggcttagtcccttagctggtctccggttttccaccct
tgctgctattgcaaggtccccttggtttcctcaggctgtggaaatattag
agatgaggagggtgaccttcagctcctaatatagcctaagagccacaaat
tgtggtgttacaagtgacataattcttgtagaggccttgctgaatctgaa
gttgacattctcccttgagagttgcacagtactcagaactgtgcatgctg
atcatgataataacaaaatacagtattggcatcagcatgggtgcagaata
caccttgccagggaaggtcactgacatttctggtccctggaagataaact
agctgaatgaaggttggattctagtttcagttcacacaagaaattctctt
tctcatgaagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_24538736_24539567
seq2: B6Ng01-342O03.b_45_876 (reverse)

seq1  CAGGGTCTCCAGTTACATACATATGGTTCCTCTTTGAGCTCAGTTTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTCCAGTTACATACATATGGTTCCTCTTTGAGCTCAGTTTGCTT  50

seq1  TCTAAGTAGTCTCTTTGCTCTCTTTCACTTTGGGCAGTTCCTGTTACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTAGTCTCTTTGCTCTCTTTCACTTTGGGCAGTTCCTGTTACTGT  100

seq1  CTTCAACTTCACAAATCTTTTCAACTGCAGTACCTATCTGTCCCTACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTTCACAAATCTTTTCAACTGCAGTACCTATCTGTCCCTACTCT  150

seq1  CACTTAGCTCATAGTTCACCTTCTAAACAGTAGTAGTTTTCACTTTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGCTCATAGTTCACCTTCTAAACAGTAGTAGTTTTCACTTTCAGA  200

seq1  ATTTGATAGGGATCTGTTCTTTATCACTTCTATGTCTAACTTTCTGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATAGGGATCTGTTCTTTATCACTTCTATGTCTAACTTTCTGCATA  250

seq1  TATGAAACGTAGCCATGGCAACTATATGATTACATTTATTATAATATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAACGTAGCCATGGCAACTATATGATTACATTTATTATAATATCTA  300

seq1  TATTACTTAAGCTACATTTATTTTCAGTTAGTTTGCCCTCATGATCGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTAAGCTACATTTATTTTCAGTTAGTTTGCCCTCATGATCGATC  350

seq1  ATCTTCTTTCATGCATGTACATCCCAGGTCTCTTTCTTTCTGTGCTGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTTCATGCATGTACATCCCAGGTCTCTTTCTTTCTGTGCTGGCA  400

seq1  TTTAGATTCAGCCTAGACACCGGGCTTTGTGAACAGACCCTTGTCAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTCAGCCTAGACACCGGGCTTTGTGAACAGACCCTTGTCAGGCA  450

seq1  TTGCATAGCCTCATATTCTGGTGCATAGTCTGAAACCTTGCTGTGGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAGCCTCATATTCTGGTGCATAGTCTGAAACCTTGCTGTGGGATT  500

seq1  TGGTTACTTTCGTTGGAAATAGTTTGTAGTTTTTCTTCCACGATGTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACTTTCGTTGGAAATAGTTTGTAGTTTTTCTTCCACGATGTCTTA  550

seq1  GATAGGATTGTACCTAACCAAGGACTATTTTCTCACTCATGAAACAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGATTGTACCTAACCAAGGACTATTTTCTCACTCATGAAACAAATT  600

seq1  TTCTGAAGTACTGCCAATGTCCTGTCAGACAAAACTCATGCCCATGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTACTGCCAATGTCCTGTCAGACAAAACTCATGCCCATGTGAA  650

seq1  TCACACTGTCAATATCCTGCAGTCCCTTTAGACACTTTCTGCTTCCACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTGTCAATATCCTGCAGTCCCTTTAGACACTTTCTGCTTCCACCT  700

seq1  TCTGGAAATTCCTCCACATAATTGTGTTTAGCAACTTTCAGAACACCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAATTCCTCCACATAATTGTGTTTAGCAACTTTCAGAACACCCAG  750

seq1  AAAAAAAAACTCTTTATAGATCTCTGGGTTTCCTTCCCTTAAGCCATCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACTCTTTATAGATCTCTGGGTTTCCTTCCCTTAAGCCATCGC  800

seq1  CTCTTCCTCTCCCTCAGTTGTTCTCTGAATTC  832
      ||||||||||||||||||||||||||||||||
seq2  CTCTTCCTCTCCCTCAGTTGTTCTCTGAATTC  832


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