BAC Information

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BAC

Clone NameB6Ng01-343A12
Chromosome9 (Build37)
Map Location 98,679,826 - 98,779,034
singlet/doubletdoublet
Overlap geneEG623166, EG623186, 2410012M07Rik, LOC546155
Upstream geneClstn2, LOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22
Downstream geneLOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343A12.bB6Ng01-343A12.g
ACCGA125925GA125926
length7451,142
definitionB6Ng01-343A12.b B6Ng01-343A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,778,426 - 98,779,034)(98,679,826 - 98,680,966)
sequence
gaattctgtaaaagaagatggagaaagagtaaaagaagatggagaaagag
gaaaagtaaaatatcaaatcattcttctctctctcactctttttttgctc
taactttatttatttcaatgcctattttaatgatggctcttaaatacttt
aacctctttttttttttttttttttttttttttagcaactatccaccaga
ggtagggaaaaaggcaggatcccggggaagtgggcatgtttagaaatggt
tctttggagcaactgccatttgtgttgtctggaaattggtagttgagtcc
agaggtcatcagcagaagcttgatctactggcaaacacttctcagacacc
ccctcagttcagtttagtaaagacaggatagcatcagggggcaggatcta
gtaggaacagccaagcaggatggatttgaccagcaggtatgtcaggaact
gtgcctttcaagacagagtgaaaatcagggaagaggagagaccaacaagt
gttttcctatgcaagcaagccaaactcagccttctttccttgtctaacca
gtcctttttatactcccttcaaacatctggggtcctccacaggttttgtc
ttaagcccaattcttgccttagcctgtttcttgcctcaacaggtaaatct
gtctcaactgagatcactctgcccatcagcctaagcctgtggatgtggca
agaaactgtagcaaaccaccagatgttttttgatgtgtttctctc
gaattccagaccagcctggtctacagagtgagttccaggacaaccagggc
tacatagagaatccctgtctcaaaaaacaaagaaaaaaaaaaagaagaag
aggaaagaaattattatgttaaaactccttatgtttctatgttcttcttg
acaagaaaaaaaaaaaaaaaaaaaaggagagaaagaaccaaaatgaaaag
gccagccaagaactggaaagcagtcctataaagtacagcccaggactgag
gagccccaggcacccagctcaccacccctcctcccacttcgtgtgagtcc
aacccagcctcctttccttggcattgactggacacctgtgtccatgcttt
aatccccaggtaagctgcctgcacataaccttgcacctctccttgtcctg
gccacggggacatcaatagccaggcacacctgtgtactagtggtcactaa
tctgtgggtgaggcctagcaggacagacacctcagcttttgaagtactga
caagactgttccaccaagcctgacccttgacctacaggtgggcacagcca
ttgtccctgcacgtcccggccaccatcagcccaactgcagaaacccatga
aggcattcaagtcaggtcgatgcaaagcaaaacaaacagagggggcaagg
ggcaaggtttgtgtggaaggcttggctgagcgaggaaaccattgcttggc
gtataggaatagtcctcaccaggtaggtcccactggccagcaggggtcca
cctgtcatagcagattgtctggaagcatgtggctggatcagctctccaaa
aacaagaggctctggagaatcagaaaatgcctgggcatcagaaagcagcg
ccttactgttcagagcccacagagaggcacaggactgagaggtacagcta
actgaactccacagagcccacaatcctcccctcccattcttccataagag
tctcagctccatccgctgcttggctgtgggtatcctcatctgtctgagtc
agctgctgggtggagccttctcggacacagccacgacagacgtcctgttc
tataagcgcatcagagcacccactgatagtgtcaggatgggtgcagattc
ttttttgaactgacttgtcgcaaggaagccagcatgaaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_98778426_98779034
seq2: B6Ng01-343A12.b_44_652 (reverse)

seq1  TGGGCTTAAGACAAAACCTGTGGAGGACCCCAGATGTTTGAAGGGAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTAAGACAAAACCTGTGGAGGACCCCAGATGTTTGAAGGGAGTAT  50

seq1  AAAAAGGACTGGTTAGACAAGGAAAGAAGGCTGAGTTTGGCTTGCTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGACTGGTTAGACAAGGAAAGAAGGCTGAGTTTGGCTTGCTTGCA  100

seq1  TAGGAAAACACTTGTTGGTCTCTCCTCTTCCCTGATCTTCACTCTGTCTT  150
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAGGAAAACACTTGTTGGTCTCTCCTCTTCCCTGATTTTCACTCTGTCTT  150

seq1  GAAAGGCACAGTTCCTGACATACCTGCTGGTCAAATCCATCCTGCTTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCACAGTTCCTGACATACCTGCTGGTCAAATCCATCCTGCTTGGC  200

seq1  TGTTCCTACTAGATCCTGCCCCCTGATGCTATCCTGTCTCTACTAAACTG  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGTTCCTACTAGATCCTGCCCCCTGATGCTATCCTGTCTTTACTAAACTG  250

seq1  AACTGAGGGTGTGTCTGAGAAGTGTTTGCCAGTAGATCAAGCTTCTGCTG  300
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGGGGTGTCTGAGAAGTGTTTGCCAGTAGATCAAGCTTCTGCTG  300

seq1  ATGACCTCTGGACTCAACTACCAATTTCCAGACAACACAAATGGCAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTCTGGACTCAACTACCAATTTCCAGACAACACAAATGGCAGTTG  350

seq1  CTCCAAAGAACCATTTCTAAACATGCCCACTTCCCCGGGATCCTGCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGAACCATTTCTAAACATGCCCACTTCCCCGGGATCCTGCCTTT  400

seq1  TTCACTACCTCTGGTGGATAGTTGCTAAAAAAAAAAAAAAAAAAAAAAAA  450
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTACCTCTGGTGGATAGTTGCTAAAAAAAAAAAAAAAAAAAAAAAA  450

seq1  AAAGAGGTTAAAGTATTTAAGAGCCATCATTAAAATAGGCATTGAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGTTAAAGTATTTAAGAGCCATCATTAAAATAGGCATTGAAATAA  500

seq1  ATAAAGTTAGAGCAAAAAAAGAGTGAGAGAGAGAAGAATGATTTGATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTAGAGCAAAAAAAGAGTGAGAGAGAGAAGAATGATTTGATATT  550

seq1  TTACTTTTCCTCTTTCTCCATCTTCTTTTACTCTTTCTCCATCTTCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTCCTCTTTCTCCATCTTCTTTTACTCTTTCTCCATCTTCTTTT  600

seq1  ACAGAATTC  609
      |||||||||
seq2  ACAGAATTC  609

seq1: chr9_98679826_98680966
seq2: B6Ng01-343A12.g_67_1208

seq1  GAATTCCAGACCAGCCTGGTCTACAGAGTGAGTTCCAGGACAACCAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCAGCCTGGTCTACAGAGTGAGTTCCAGGACAACCAGGGC  50

seq1  TACATAGAGAATCCCTGTCTCAAAAAACAAAGAAAAAAAAAAAGAAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGAGAATCCCTGTCTCAAAAAACAAAGAAAAAAAAAAAGAAGAAG  100

seq1  AGGAAAGAAATTATTATGTTAAAACTCCTTATGTTTCTATGTTCTTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAAATTATTATGTTAAAACTCCTTATGTTTCTATGTTCTTCTTG  150

seq1  ACAAGAAAAAAAAAAAAAAAAAAAAGGAGAGAAAGAACCAAAATGAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAAAAAAAAAAAAAAAAAAGGAGAGAAAGAACCAAAATGAAAAG  200

seq1  GCCAGCCAAGAACTGGAAAGCAGTCCTATAAAGTACAGCCCAGGACTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCAAGAACTGGAAAGCAGTCCTATAAAGTACAGCCCAGGACTGAG  250

seq1  GAGCCCCAGGCACCCAGCTCACCACCCCTCCTCCCACTTCGTGTGAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCAGGCACCCAGCTCACCACCCCTCCTCCCACTTCGTGTGAGTCC  300

seq1  AACCCAGCCTCCTTTCCTTGGCATTGACTGGACACCTGTGTCCATGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGCCTCCTTTCCTTGGCATTGACTGGACACCTGTGTCCATGCTTT  350

seq1  AATCCCCAGGTAAGCTGCCTGCACATAACCTTGCACCTCTCCTTGTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCAGGTAAGCTGCCTGCACATAACCTTGCACCTCTCCTTGTCCTG  400

seq1  GCCACGGGGACATCAATAGCCAGGCACACCTGTGTACTAGTGGTCACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGGGGACATCAATAGCCAGGCACACCTGTGTACTAGTGGTCACTAA  450

seq1  TCTGTGGGTGAGGCCTAGCAGGACAGACACCTCAGCTTTTGAAGTACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGTGAGGCCTAGCAGGACAGACACCTCAGCTTTTGAAGTACTGA  500

seq1  CAAGACTGTTCCACCAAGCCTGACCCTTGACCTACAGGTGGGCACAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTGTTCCACCAAGCCTGACCCTTGACCTACAGGTGGGCACAGCCA  550

seq1  TTGTCCCTGCACGTCCCGGCCACCATCAGCCCAACTGCAGAAACCCATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTGCACGTCCCGGCCACCATCAGCCCAACTGCAGAAACCCATGA  600

seq1  AGGCATTCAAGTCAGGTCGATGCAAAGCAAAACAAACAGAGGGGGCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTCAAGTCAGGTCGATGCAAAGCAAAACAAACAGAGGGGGCAAGG  650

seq1  GGCAAGGTTTGTGTGGAAGGCTTGGCTGAGCGAGGAAACCATTGCTTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGTTTGTGTGGAAGGCTTGGCTGAGCGAGGAAACCATTGCTTGGC  700

seq1  GTATAGGAATAGTCCTCACCAGGTAGGTCCCACTGGCCAGCAGGGGTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGAATAGTCCTCACCAGGTAGGTCCCACTGGCCAGCAGGGGTCCA  750

seq1  CCTGTCATAGCAGATTGTCTGGAAGCATGTGGCTGGATCAGCTCTCCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCATAGCAGATTGTCTGGAAGCATGTGGCTGGATCAGCTCTCCAAA  800

seq1  AACAAGAGGCTCTGGAGAATCAGAAAATGCCTGGGCATCAGAAAGCAGCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAGGCTCTGGAGAATCAGAAAATGCCTGGGCATCAGAAAGCAGCG  850

seq1  CCTTACTGTTTCAGAGCCCACAGAGAGGCACAGGACTGAGAGGTACAGCT  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTG-TTCAGAGCCCACAGAGAGGCACAGGACTGAGAGGTACAGCT  899

seq1  AACTGAACTTCCACAGAGCCCACAATCAT-CCCTCCCATTCTTCCATAAG  949
      |||||||| |||||||||||||||||| | ||||||||||||||||||||
seq2  AACTGAAC-TCCACAGAGCCCACAATCCTCCCCTCCCATTCTTCCATAAG  948

seq1  AGTCTCAAGCTCCATCCGCTGCTTGGCTGTGGGTATCCTCATCTGTCTGA  999
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTC-AGCTCCATCCGCTGCTTGGCTGTGGGTATCCTCATCTGTCTGA  997

seq1  GTCAGCTGCTGGGTGGAGCC-TCTCGGACAACAGCCACGACAGAC-TCCT  1047
      |||||||||||||||||||| |||||||| ||||||||||||||| ||||
seq2  GTCAGCTGCTGGGTGGAGCCTTCTCGGAC-ACAGCCACGACAGACGTCCT  1046

seq1  G-TCTATAAGCGCATCAGAGCA-CCACTAATAGTGTCAGGGATTGGGTGC  1095
      | |||||||||||||||||||| ||||| |||||||||||   |||||||
seq2  GTTCTATAAGCGCATCAGAGCACCCACTGATAGTGTCAGG--ATGGGTGC  1094

seq1  AGATACTTTTT--GACTGACTTGTCGCAGGGAAGCAGGTATGAAAATT  1141
      |||| ||||||   |||||||||||||| ||||||  | |||||||||
seq2  AGATTCTTTTTTGAACTGACTTGTCGCAAGGAAGCCAGCATGAAAATT  1142