BAC Information

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BAC

Clone NameB6Ng01-343C01
Chromosome9 (Build37)
Map Location 14,614,974 - 14,706,881
singlet/doubletdoublet
Overlap geneMre11a, LOC100040259, Gpr83, Folr4
Upstream geneCep57, 2810485I05Rik, LOC665329, Sesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49
Downstream genePanx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343C01.bB6Ng01-343C01.g
ACCGA125990GA125991
length1,0851,137
definitionB6Ng01-343C01.b B6Ng01-343C01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,614,974 - 14,616,054)(14,705,728 - 14,706,881)
sequence
gaattccctcagttactctgagctatctccagctcctcctgtctcttagc
catcttttcattctaagcctctggctttaacagcatttggtagtagtgag
tcttgaattttttttttttttttttttttttttttttgtaagtcctgtgc
tcaggaagtatggccttaaagccagcagccttggcatccccagtgttaaa
atgtggaattccaggtcccacattgaccctgttgccttctgacaagatcc
caagaaatttgtgtgcgcattaccgcttgagaagtcctgggatatacctg
aggggctgaaaatttgatagtgctcagtccaggaggttggtgctttactg
gtcagagtagtcacagtctcacactatacagaccaaaaactcggtgagtg
cacagatcaggagagccactgtgtccccagtctgtggacaaagcctggaa
atgctcgttgtaatgtaagagaaggaatagacggtggcagcaggataagc
tagctcagcagcaagggggaagggcaagtgagctcttactgcgagatgcc
acccacaacagttaaggcaatcaagacaaatggtttcagagggttaaagt
ctgctggtggatcagaggcagcaggagataggcaccgtggctggtatgga
agccgagggctcacatttttagccataagcatgaaagagagtgcaggtca
gcagtagatgatgctttttactctcaaagcctacctgtgagaaggccatg
cgccctaagcctcagacgatggggggaacctcattcaaacgaccgtaagt
agccattgctcagaacccacagaccatgacatttttcactgtctggattt
tcctggcattgtctttgtccagtctgcagctgtctccctgggacccaagt
gaataagctgagttacgttaggagcatgtttttgtaaggatttatccctc
ttattttgaaagttgagaaactgacttaaaggatgcaccttgtttcctgg
ctgatacaatgctggtgtgctaggctatcgtccatcctgagatgccattt
cccttgttctggttgaacagggagtctgttatgta
gaattccaagcgccacaagcaagaacctggcccagaagacgaactctacc
aggaggtacagagcagcgctggcccaggggctagggcagcttcttaggat
tatttgagaagaaatacagaccaggtggtctctgtaccccaccaccccta
atcatttagatccttaatttggggtccatctagggctttgccactaagct
gttctggccgcttgggaaacaggtcatgtggtgatcccagaggctatgct
agctaaccgtgggtcagagcaagcctccctgccaacatgcgctggcgaga
cagaccttaatttgtctccttgtcagtttcctaaaggctgtgggaggagg
aacattccaacgagaagctcctcccacccgtgataaccacccaggttcct
gaatctttctatttgctttcctggatttattgccccacccccaccccctg
gagcagacacctggaagctatactttgtggcaagaaggcagaggggaggg
aggtcaatggtcaggtgcgcctcattcttcagatactagagttcctcctc
tagagaggtgctcatatcccctctcctgacgcccttctgcccccacctca
gtgcaggccttgggaggacaatgcctgctgcacacgttccacaagttggg
aagcccaccttgaggagcccttgctctttaacttcagcatgatgcactgt
ggactgctgaccccggcctgtcgcaagcacttcatccaggccatctgctt
ccatgagtgttcccccaacctggggccttggatccagccggtgaggacat
aggagacaggaggcagactcatgcaacacccttccattcaatcctaggct
ggcatctacaggaggcaagtaggaacaggagatgctgcccctctagggat
aagagcagagccagaggtctctgctggagacagggatgaaaaggaagcta
aaatgcctctgtccctgcatgatacatgacagacactgtctgatgagggc
agtagataagcagtgatgagatgaatctgagtgtgatctatctctgtact
actaactgtaagctggacatgagctgctctgcctcacgttctcattaatc
atattgaatgatgatgatgtagatgccgagtatgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_14614974_14616054
seq2: B6Ng01-343C01.b_47_1131

seq1  GAATTCCCTCAGTTACTCTGAGCTATCTCCAGCTCCTCCTGTCTCTTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCAGTTACTCTGAGCTATCTCCAGCTCCTCCTGTCTCTTAGC  50

seq1  CATCTTTTCATTCTAAGCCTCTGGCTTTAACAGCATTTGGTAGTAGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTCATTCTAAGCCTCTGGCTTTAACAGCATTTGGTAGTAGTGAG  100

seq1  TCTTGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAAGTCCTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAAGTCCTGTGC  150

seq1  TCAGGAAGTATGGCCTTAAAGCCAGCAGCCTTGGCATCCCCAGTGTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGTATGGCCTTAAAGCCAGCAGCCTTGGCATCCCCAGTGTTAAA  200

seq1  ATGTGGAATTCCAGGTCCCACATTGACCCTGTTGCCTTCTGACAAGATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAATTCCAGGTCCCACATTGACCCTGTTGCCTTCTGACAAGATCC  250

seq1  CAAGAGATTTGTGTGCGCATTACCGCTTGAGAAGTCCTGGGATATACCTG  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAATTTGTGTGCGCATTACCGCTTGAGAAGTCCTGGGATATACCTG  300

seq1  AGGGGCTGAGAATTTGATAGTGCTCAGTCCAGGAGGTTGGTGCTTTACTG  350
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGAAAATTTGATAGTGCTCAGTCCAGGAGGTTGGTGCTTTACTG  350

seq1  GTCAGAGTAGTCACAGTCTCACACTATACAGACCAAAAACTCGGTGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGTAGTCACAGTCTCACACTATACAGACCAAAAACTCGGTGAGTG  400

seq1  CACAGATCAGGAGAGCCACTGTGTCCCCAGTCTGTGGACAAAGCCTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATCAGGAGAGCCACTGTGTCCCCAGTCTGTGGACAAAGCCTGGAA  450

seq1  ATGCTCGTTGTAATGTAAGAGAAGGAATAGACGGTGGCAGCAGGATAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCGTTGTAATGTAAGAGAAGGAATAGACGGTGGCAGCAGGATAAGC  500

seq1  TAGCTCAGCAGCAAGGGGGAAGGGCAAGTGAGCTCTTACTGCGAGATGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAGCAGCAAGGGGGAAGGGCAAGTGAGCTCTTACTGCGAGATGCC  550

seq1  ACCCACAACAGTTAAGGCAATCAAGACAAATGGTTTCAGAGGGTTAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAACAGTTAAGGCAATCAAGACAAATGGTTTCAGAGGGTTAAAGT  600

seq1  CTGCTGGTGGATCAGAGGCAGCAGGAGATAGGCACCGTGGCTGGTATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGTGGATCAGAGGCAGCAGGAGATAGGCACCGTGGCTGGTATGGA  650

seq1  AGCCGAGGGCTCACATTTTTAGCCATAAGCATGAAAGAGAGTGCAGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGAGGGCTCACATTTTTAGCCATAAGCATGAAAGAGAGTGCAGGTCA  700

seq1  GCAGTAGATGATGCTTTTTACTCTCAAAGCCTACCTGTGAGAAGGCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGATGATGCTTTTTACTCTCAAAGCCTACCTGTGAGAAGGCCATG  750

seq1  CGCCCTAAGCCTCAGACGAT-GGGGGAACCTCATTCAAACGACCGTAAGT  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CGCCCTAAGCCTCAGACGATGGGGGGAACCTCATTCAAACGACCGTAAGT  800

seq1  AGCCATTGCTCAGAACCCACAGA-CATGACATTTTTCACTGTCTGGATTT  848
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGCCATTGCTCAGAACCCACAGACCATGACATTTTTCACTGTCTGGATTT  850

seq1  TCCTGGCATTGTCTTTGTCCAGTCTGCAGCTGTCTCCCTGGGACCCAGGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCCTGGCATTGTCTTTGTCCAGTCTGCAGCTGTCTCCCTGGGACCCAAGT  900

seq1  GAATAAGCTGAGTTACGTAAGGAGCATGTTTTGTTAAGGATTTATCCCTC  948
      |||||||||||||||||| |||||||||||||  ||||||||||||||||
seq2  GAATAAGCTGAGTTACGTTAGGAGCATGTTTTTGTAAGGATTTATCCCTC  950

seq1  -TATTTTGAAAGTTGAGAAACTGACTTAAAAGATGCACCTTGTTT-CTGG  996
       ||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  TTATTTTGAAAGTTGAGAAACTGACTTAAAGGATGCACCTTGTTTCCTGG  1000

seq1  CTGATACCATGCT-GTGTGCCTAGGCTATCGTTCCATCCTGAGATGCCAT  1045
      ||||||| ||||| ||||| ||||||||||| ||||||||||||||||||
seq2  CTGATACAATGCTGGTGTG-CTAGGCTATCG-TCCATCCTGAGATGCCAT  1048

seq1  TT-CCTTGTTCT-GTTGAACAGGAAGTCTGTTTATGTA  1081
      || ||||||||| |||||||||| |||||| |||||||
seq2  TTCCCTTGTTCTGGTTGAACAGGGAGTCTG-TTATGTA  1085

seq1: chr9_14705728_14706881
seq2: B6Ng01-343C01.g_67_1203 (reverse)

seq1  CATCA---TCGGCATCATCATCATCATCATCAATTATTGGATAAATGAGA  47
      |||||   ||||||||  ||||||||||||  | |||  ||| |||||||
seq2  CATCATACTCGGCATCTACATCATCATCATTCAATAT--GATTAATGAGA  48

seq1  ACCGTGAGGCAGAGCAGCTCATTGGTCCCAGGCCTTACAGTTAGTAAGTA  97
      | ||||||||||||||||||||  || ||||  |||||||||||| ||||
seq2  A-CGTGAGGCAGAGCAGCTCAT--GT-CCAG--CTTACAGTTAGT-AGTA  91

seq1  CAGGAGATAGAATTCACACTCAGATTCATCTCATTCCACCCTGCCTTATC  147
      || ||||||||  |||||||||||||||||||||    | ||| ||||| 
seq2  CA-GAGATAGA--TCACACTCAGATTCATCTCAT----CACTG-CTTAT-  132

seq1  CTACTGGCCCTCATCAGACAGTGTCTGTCATGTTATCATGCAGGGACAGA  197
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  CTACT-GCCCTCATCAGACAGTGTCTGTCATG-TATCATGCAGGGACAGA  180

seq1  GGCATTTTAGCTTCCTTTTCATCCCTGTCTCCAGCAGAGACCTCTGGCTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTAGCTTCCTTTTCATCCCTGTCTCCAGCAGAGACCTCTGGCTC  230

seq1  TGCTCTTATCCCTAGAGGGGCAGCATCTCCTGTTCCTACTTGCCTCCTGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTATCCCTAGAGGGGCAGCATCTCCTGTTCCTACTTGCCTCCTGT  280

seq1  AGATGCCAGCCTAGGATTGAATGGAAGGGTGTTGCATGAGTCTGCCTCCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCAGCCTAGGATTGAATGGAAGGGTGTTGCATGAGTCTGCCTCCT  330

seq1  GTCTCCTATGTCCTCACCGGCTGGATCCAAGGCCCCAGGTTGGGGGAACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTATGTCCTCACCGGCTGGATCCAAGGCCCCAGGTTGGGGGAACA  380

seq1  CTCATGGAAGCAGATGGCCTGGATGAAGTGCTTGCGACAGGCCGGGGTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGAAGCAGATGGCCTGGATGAAGTGCTTGCGACAGGCCGGGGTCA  430

seq1  GCAGTCCACAGTGCATCATGCTGAAGTTAAAGAGCAAGGGCTCCTCAAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCCACAGTGCATCATGCTGAAGTTAAAGAGCAAGGGCTCCTCAAGG  480

seq1  TGGGCTTCCCAACTTGTGGAACGTGTGCAGCAGGCATTGTCCTCCCAAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTCCCAACTTGTGGAACGTGTGCAGCAGGCATTGTCCTCCCAAGG  530

seq1  CCTGCACTGAGGTGGGGGCAGAAGGGCGTCAGGAGAGGGGATATGAGCAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACTGAGGTGGGGGCAGAAGGGCGTCAGGAGAGGGGATATGAGCAC  580

seq1  CTCTCTAGAGGAGGAACTCTAGTATCTGAAGAATGAGGCGCACCTGACCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGAGGAGGAACTCTAGTATCTGAAGAATGAGGCGCACCTGACCA  630

seq1  TTGACCTCCCTCCCCTCTGCCTTCTTGCCACAAAGTATAGCTTCCAGGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTCCCTCCCCTCTGCCTTCTTGCCACAAAGTATAGCTTCCAGGTG  680

seq1  TCTGCTCCAGGGGGTGGGGGTGGGGCAATAAATCCAGGAAAGCAAATAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCAGGGGGTGGGGGTGGGGCAATAAATCCAGGAAAGCAAATAGA  730

seq1  AAGATTCAGGAACCTGGGTGGTTATCACGGGTGGGAGGAGCTTCTCGTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCAGGAACCTGGGTGGTTATCACGGGTGGGAGGAGCTTCTCGTTG  780

seq1  GAATGTTCCTCCTCCCACAGCCTTTAGGAAACTGACAAGGAGACAAATTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTCCTCCTCCCACAGCCTTTAGGAAACTGACAAGGAGACAAATTA  830

seq1  AGGTCTGTCTCGCCAGCGCATGTTGGCAGGGAGGCTTGCTCTGACCCACG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGTCTCGCCAGCGCATGTTGGCAGGGAGGCTTGCTCTGACCCACG  880

seq1  GTTAGCTAGCATAGCCTCTGGGATCACCACATGACCTGTTTCCCAAGCGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTAGCATAGCCTCTGGGATCACCACATGACCTGTTTCCCAAGCGG  930

seq1  CCAGAACAGCTTAGTGGCAAAGCCCTAGATGGACCCCAAATTAAGGATCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACAGCTTAGTGGCAAAGCCCTAGATGGACCCCAAATTAAGGATCT  980

seq1  AAATGATTAGGGGTGGTGGGGTACAGAGACCACCTGGTCTGTATTTCTTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTAGGGGTGGTGGGGTACAGAGACCACCTGGTCTGTATTTCTTC  1030

seq1  TCAAATAATCCTAAGAAGCTGCCCTAGCCCCTGGGCCAGCGCTGCTCTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAATCCTAAGAAGCTGCCCTAGCCCCTGGGCCAGCGCTGCTCTGT  1080

seq1  ACCTCCTGGTAGAGTTCGTCTTCTGGGCCAGGTTCTTGCTTGTGGCGCTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTGGTAGAGTTCGTCTTCTGGGCCAGGTTCTTGCTTGTGGCGCTT  1130

seq1  GGAATTC  1154
      |||||||
seq2  GGAATTC  1137