BAC Information

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BAC

Clone NameB6Ng01-343C17
Chromosome9 (Build37)
Map Location 95,073,411 - 95,074,598
singlet/doubletsinglet
Overlap geneSlc9a9
Upstream geneEG384968, 1190002N15Rik, EG667601
Downstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343C17.bB6Ng01-343C17.g
ACCGA126020GA126021
length1,2011,183
definitionB6Ng01-343C17.b B6Ng01-343C17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaactttgaatagaccactaggaggcaatgaaaccggaaaatgg
gtccttgctgggagaagtgagtcactgggggcatgccttcaaaggatctt
gttggcctgcacatctgcctcaccactgaggtaatggagtgccattggca
ggttgctcacagaaggcaggacacggtcccagcctgtgttcttccgggtg
agaaacagcgagatctgggaccaatgctgtggttctcggtctacggtgtg
cccggatgcctctgaggaccacggggagttgagaatgggactgggtctgc
aagtctgagcctcccctgcgtaccagacagaaaggggatggctgagcctg
gcactgggtgaaatcggatttagtttcaggtgagtgatgagagtacacag
gggctgaaagagagaaggccttctctgggagatttaggctcagctcttta
tgatgacgcaatcgtgggatgaccccccatagcgatccttgatgaaagag
acagtccttccttgtccaaaatactttatttatggcaggtataaatgcac
atgtcttacttcaggtgaaccagggataaaatacctttggaggggcagaa
tgcatgggaagggatgctcattggctaaacactcagtgcctatcaagata
cctaatcagcatggaaaactccaggtctttatgctatgttgtaatggtcc
tctccatgaggtgtcatagttaagtgtgccaggacaggtagagcctgcca
gggaactggttccatgcctgctgttctcaattctgagattccctggagtt
ttgaacctgcttcaacctggccagttcttctgtctggtggcacgctccac
ttgccccacagggtctgaactggccctggcccttcttgtttctctctttc
tctctctcagtctctcaatctctgtctctctctctctgcctctctctctc
tctctctctctctctctctccctctcttcccaccatcatcaggtggggtg
gagcagcttcctctaccaccatgcctcccttgcacttttaatgttagacc
tcacagtggcccaggaactaacagtcaaccagcagcacttacttaaccac
tcagatacctgagttcattggacatgttactaaaagattctgaaactcct
gggttcaaaacaaacccgtcctaacctatcgaatgttttctctgtacatt
g
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggcttgttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgtgtcaagctgctagtatgtgctctctcccgttttttct
gaagcactcatagctatgagttccctcttagaaatgctttcatgtgtccc
aaggtttgggtacgtgtggctcatttcataaactctaaaagtcttattct
ttcttatcttcttgacaggatcattggaaagagttgttcagtatcatgtg
aagtgcctctgcaataagtggattgagaatcagcttaagcatggggatct
gaaatggaaatccatgggacagccaatctacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_95073411_95074598
seq2: B6Ng01-343C17.b_47_1247

seq1  GAATTCAAACTTTGAATAGACCACTAGGAGGCAATGAAACCGGAAAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTTTGAATAGACCACTAGGAGGCAATGAAACCGGAAAATGG  50

seq1  GTCCTTGCTGGGAGAAGTGAGTCACTGGGGGCATGCCTTCAAAGGATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGCTGGGAGAAGTGAGTCACTGGGGGCATGCCTTCAAAGGATCTT  100

seq1  GTTGGCCTGCACATCTGCCTCACCACTGAGGTAATGGAGTGCCATTGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCCTGCACATCTGCCTCACCACTGAGGTAATGGAGTGCCATTGGCA  150

seq1  GGTTGCTCACAGAAGGCAGGACACGGTCCCAGCCTGTGTTCTTCCGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTCACAGAAGGCAGGACACGGTCCCAGCCTGTGTTCTTCCGGGTG  200

seq1  AGAAACAGCGAGATCTGGGACCAATGCTGTGGTTCTCGGTCTACGGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGCGAGATCTGGGACCAATGCTGTGGTTCTCGGTCTACGGTGTG  250

seq1  CCCGGATGCCTCTGAGGACCACGGGGAGTTGAGAATGGGACTGGGTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGATGCCTCTGAGGACCACGGGGAGTTGAGAATGGGACTGGGTCTGC  300

seq1  AAGTCTGAGCCTCCCCTGCGTACCAGACAGAAAGGGGATGGCTGAGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGAGCCTCCCCTGCGTACCAGACAGAAAGGGGATGGCTGAGCCTG  350

seq1  GCACTGGGTGAAATCGGATTTAGTTTCAGGTGAGTGATGAGAGTACACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGTGAAATCGGATTTAGTTTCAGGTGAGTGATGAGAGTACACAG  400

seq1  GGGCTGAAAGAGAGAAGGCCTTCTCTGGGAGATTTAGGCTCAGCTCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAAAGAGAGAAGGCCTTCTCTGGGAGATTTAGGCTCAGCTCTTTA  450

seq1  TGATGACGCAATCGTGGGATGACCCCCCATAGCGATCCTTGATGAAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACGCAATCGTGGGATGACCCCCCATAGCGATCCTTGATGAAAGAG  500

seq1  ACAGTCCTTCCTTGTCCAAAATACTTTATTTATGGCAGGTATAAATGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCTTCCTTGTCCAAAATACTTTATTTATGGCAGGTATAAATGCAC  550

seq1  ATGTCTTACTTCAGGTGAACCAGGGATAAAATACCTTTGGAGGGGCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTACTTCAGGTGAACCAGGGATAAAATACCTTTGGAGGGGCAGAA  600

seq1  TGCATGGGAAGGGATGCTCATTGGCTAAACACTCAGTGCCTATCAAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGGAAGGGATGCTCATTGGCTAAACACTCAGTGCCTATCAAGATA  650

seq1  CCTAATCAGCATGGAAAACTCCAGGTCTTTATGCTATGTTGTAATGGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCAGCATGGAAAACTCCAGGTCTTTATGCTATGTTGTAATGGTCC  700

seq1  TCTCCATGAGGTGTCATAGTTAAGTGTGCCAGGACAGGTAGAGCCTGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATGAGGTGTCATAGTTAAGTGTGCCAGGACAGGTAGAGCCTGCCA  750

seq1  GGGAACTGGTTCCATGCCTGCTGTTCTCAATTCTGAGATTCCCTGGAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTGGTTCCATGCCTGCTGTTCTCAATTCTGAGATTCCCTGGAGTT  800

seq1  TTGAACCTGCTTCAACCTGGCCAGTTCTTCTGTCTGGTGGCACGCTCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCTGCTTCAACCTGGCCAGTTCTTCTGTCTGGTGGCACGCTCCAC  850

seq1  TTGCCCCACAGGGTCTGAACTGGCCCTGGCCCTTCTTGTTTCTCTCTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCACAGGGTCTGAACTGGCCCTGGCCCTTCTTGTTTCTCTCTTTC  900

seq1  TCTCTCTCAGTCTCTCAATCTCTGTCTCTCTCTCTCTGCCTCTCTCTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCAGTCTCTCAATCTCTGTCTCTCTCTCTCTGCCTCTCTCTCTC  950

seq1  TCTCTCTCTCTCTCTCTCTCCCTCTCTTCCCACCATCATCAGGTGGG--T  998
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  TCTCTCTCTCTCTCTCTCTCCCTCTCTTCCCACCATCATCAGGTGGGGTG  1000

seq1  GAGCAGCTTCCTCTACCA-CATG-CTCCC-TGCAC-TTTAATGTTAGACC  1044
      |||||||||||||||||| |||| ||||| ||||| ||||||||||||||
seq2  GAGCAGCTTCCTCTACCACCATGCCTCCCTTGCACTTTTAATGTTAGACC  1050

seq1  TCACAGTGGCCCAGGAAC-AACAGTCAACCAAGCAAGCACTTAC-TAACC  1092
      |||||||||||||||||| ||||||||||| ||| ||||||||| |||||
seq2  TCACAGTGGCCCAGGAACTAACAGTCAACC-AGC-AGCACTTACTTAACC  1098

seq1  ACTCAGATA-CTGAG-TCATGGACCATG-TACTAAGAG-TTCTG-AACTC  1137
      ||||||||| ||||| |||| |  |||| |||||| || ||||| |||||
seq2  ACTCAGATACCTGAGTTCATTGGACATGTTACTAAAAGATTCTGAAACTC  1148

seq1  CTGGG-TCAAAACAAACCCTTCCT-ACCTA-CAGATGTTTTCTCTGGTAC  1184
      ||||| ||||||||||||| |||| ||||| |  ||||||||||| ||||
seq2  CTGGGTTCAAAACAAACCCGTCCTAACCTATCGAATGTTTTCTCT-GTAC  1197

seq1  ATTG  1188
      ||||
seq2  ATTG  1201