BAC Information

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BAC

Clone NameB6Ng01-343F08
Chromosome9 (Build37)
Map Location 4,832,241 - 5,035,090
singlet/doubletdoublet
Overlap geneEG664889
Upstream geneGucy1a2, LOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4
Downstream geneCasp1, Casp4, Casp12, LOC547033, LOC100039361, LOC100039372, LOC664957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343F08.bB6Ng01-343F08.g
ACCGA126138GA126139
length1,1161,109
definitionB6Ng01-343F08.b B6Ng01-343F08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,033,970 - 5,035,090)(4,832,241 - 4,833,326)
sequence
gaattcttgtcttttccctgattttagtgggacattaaagtgccagtttt
ttttttaatactttctattttcaatttccattctatattctagaagtgaa
taacaaaaattcaaggaaccaaatacaggcaaaaataggtgaactactgt
agctggcttaggagaagaaatcaatgtcttaaaattgttgtgatctaatt
ttgattatgtcaagaagtttcactaaatttcaaggaattagaaaaaagta
ttttaatattatacagccattgtcttttttactacaaacaaataatccaa
agaatataaatgtccacatttaaactatcccagatcccagccactatgca
ttaaaaaaaaaagtgatgtctccgatagtcttgctaaattatctatgtcc
atcaacaattcagattaattttcttcacaaaaatgttcggtttttttatc
ctattcattgtgattaatagctgcaaggtagagtctatactagtttactg
ttaattatagatatgatgggaaagtaaatatggaggcattttaagttcag
catgctcttgtaaagatttgatatttaatgacagttttaagcaattctaa
aggaacagaaattgtagactggctaataaaataaagggaaatttaaacct
gtcttagaaaacactttatagtacttctgagtttcacctaataggggaaa
ccctaaattccttgtacattattgaaataataataatacacggttgcaca
aaggtgtatttttcttttttttaattggacattttctttatttacatttc
aaatgtaatctccattcctggtttcccctctgaaaaagactctccaccta
tcccctatccctcccctggctcaccaacacacccattccacttcctggtc
ctggcattcccacataatggggcatagagccttcacaggaccatgggcct
ttcctcccactgatgtccaactaggacatcctctgctacatatgcagctg
gagccatgagtcccatcttatgtactctatgctgttgcttagtctctggg
gagcctctggggatactgttagtcacattttttgtcctccatggggctat
aacccctcagcctcct

gaattcttgctttaataattgtctatacaattcatttattgattggatgc
catttagtatttaaggcatttagttttttagtgttttatgtagtatagat
ctcctgattcatatataggaatcgatgggtttttcctaagatgcctcttt
actctgtgcatgaccccctttgttatatctaagatttgtaattttctgaa
tcctgtttgtgacttttggtgactattaaacaggagtagagtcctctaca
ataagtctgtaattgttttaaaaattttagaattactttaaaggcattta
ccctaaatttccttttagctgttttactgttttgggctttacattaatgt
gtttgatccagtttgaattgattccccccctcttctctctctctgtatac
atctgcctgcattattcagtttccccagaactgtttttttaaaagactac
tttccccccagtgtatgttttttggcacctttgctaaaactgagaaggct
gtagctgtgcattatttctgggtgatgaggttcatttatgtacaaaggta
tgtctgtgatggaacccactgtgcctctgagtatattttcagaaaacaat
gtgattaccttactctttctacttaggactcttctggatttcaaagcatt
tatgcttctacattaagctaaagagttttttcctagttgtaagaatcaag
ttccctattggtagatggtacaattctagatgttaaacagctcaaaactt
taccagaaacttcttagacctgcaaagcgcttccaagaaattagttcata
gaaaatacagaaatcagcaccctttcaatacagcagcaataaagttgttc
agaaagaaataatcaagtcacattcattttatcttacaaaatacctagag
attaatgacacaagagataacagatctctaggataaaaatcggaagcact
gtatacagaagttaacgaagatattagaaagtagaagacatacctcatag
tatgtgctacaaacaatctacatattcagtattcccatcaaattctaact
atattctccagaagaacaataaacccttcactgttaagaacacaagaaat
ttgcatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5033970_5035090
seq2: B6Ng01-343F08.b_47_1162 (reverse)

seq1  AGGA-GCTGAAGGGGTTTATAGCCCCATTGGAGGAACAAAAATGTGAACT  49
      |||| |||||  ||| ||||||||||| |||||||  ||||||||| |||
seq2  AGGAGGCTGA--GGGGTTATAGCCCCA-TGGAGGACAAAAAATGTG-ACT  46

seq1  AACCAGTATCCCCAGA-GCTCCCCAGAGACTAAGCCACCAGCCATAGAGT  98
      || ||||||||||||| ||||||||||||||||| || ||| ||||||||
seq2  AA-CAGTATCCCCAGAGGCTCCCCAGAGACTAAG-CAACAG-CATAGAGT  93

seq1  ACATAAGATGGGACTCATGGCTCCAGCTGCATATGTAGCAGAGGATGTCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGATGGGACTCATGGCTCCAGCTGCATATGTAGCAGAGGATGTCC  143

seq1  TAGTTGGACATCAGTGGGAGGAAAGGCCCATGGTCCTGTGAAGGCTCTAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGACATCAGTGGGAGGAAAGGCCCATGGTCCTGTGAAGGCTCTAT  193

seq1  GCCCCATTATGTGGGAATGCCAGGACCAGGAAGTGGAATGGGTGTGTTGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATTATGTGGGAATGCCAGGACCAGGAAGTGGAATGGGTGTGTTGG  243

seq1  TGAGCCAGGGGAGGGATAGGGGATAGGTGGAGAGTCTTTTTCAGAGGGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGGGGAGGGATAGGGGATAGGTGGAGAGTCTTTTTCAGAGGGGA  293

seq1  AACCAGGAATGGAGATTACATTTGAAATGTAAATAAAGAAAATGTCCAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGAATGGAGATTACATTTGAAATGTAAATAAAGAAAATGTCCAAT  343

seq1  TAAAAAAAAGAAAAATACACCTTTGTGCAACCGTGTATTATTATTATTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAGAAAAATACACCTTTGTGCAACCGTGTATTATTATTATTTC  393

seq1  AATAATGTACAAGGAATTTAGGGTTTCCCCTATTAGGTGAAACTCAGAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTACAAGGAATTTAGGGTTTCCCCTATTAGGTGAAACTCAGAAG  443

seq1  TACTATAAAGTGTTTTCTAAGACAGGTTTAAATTTCCCTTTATTTTATTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAAAGTGTTTTCTAAGACAGGTTTAAATTTCCCTTTATTTTATTA  493

seq1  GCCAGTCTACAATTTCTGTTCCTTTAGAATTGCTTAAAACTGTCATTAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCTACAATTTCTGTTCCTTTAGAATTGCTTAAAACTGTCATTAAA  543

seq1  TATCAAATCTTTACAAGAGCATGCTGAACTTAAAATGCCTCCATATTTAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATCTTTACAAGAGCATGCTGAACTTAAAATGCCTCCATATTTAC  593

seq1  TTTCCCATCATATCTATAATTAACAGTAAACTAGTATAGACTCTACCTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCATCATATCTATAATTAACAGTAAACTAGTATAGACTCTACCTTG  643

seq1  CAGCTATTAATCACAATGAATAGGATAAAAAAACCGAACATTTTTGTGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTAATCACAATGAATAGGATAAAAAAACCGAACATTTTTGTGAA  693

seq1  GAAAATTAATCTGAATTGTTGATGGACATAGATAATTTAGCAAGACTATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTAATCTGAATTGTTGATGGACATAGATAATTTAGCAAGACTATC  743

seq1  GGAGACATCACTTTTTTTTTTAATGCATAGTGGCTGGGATCTGGGATAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACATCACTTTTTTTTTTAATGCATAGTGGCTGGGATCTGGGATAGT  793

seq1  TTAAATGTGGACATTTATATTCTTTGGATTATTTGTTTGTAGTAAAAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTGGACATTTATATTCTTTGGATTATTTGTTTGTAGTAAAAAAG  843

seq1  ACAATGGCTGTATAATATTAAAATACTTTTTTCTAATTCCTTGAAATTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGCTGTATAATATTAAAATACTTTTTTCTAATTCCTTGAAATTTA  893

seq1  GTGAAACTTCTTGACATAATCAAAATTAGATCACAACAATTTTAAGACAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACTTCTTGACATAATCAAAATTAGATCACAACAATTTTAAGACAT  943

seq1  TGATTTCTTCTCCTAAGCCAGCTACAGTAGTTCACCTATTTTTGCCTGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTTCTCCTAAGCCAGCTACAGTAGTTCACCTATTTTTGCCTGTA  993

seq1  TTTGGTTCCTTGAATTTTTGTTATTCACTTCTAGAATATAGAATGGAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTCCTTGAATTTTTGTTATTCACTTCTAGAATATAGAATGGAAAT  1043

seq1  TGAAAATAGAAAGTATTAAAAAAAAAACTGGCACTTTAATGTCCCACTAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAGAAAGTATTAAAAAAAAAACTGGCACTTTAATGTCCCACTAA  1093

seq1  AATCAGGGAAAAGACAAGAATTC  1121
      |||||||||||||||||||||||
seq2  AATCAGGGAAAAGACAAGAATTC  1116


seq1: chr9_4832241_4833326
seq2: B6Ng01-343F08.g_95_1177

seq1  ACAATTCATTTATTGATTGGATGCCATTTAGTATTTAAGGCATTTAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCATTTATTGATTGGATGCCATTTAGTATTTAAGGCATTTAGTTT  50

seq1  TTTAGTGTTTTATGTAGTATAGATCTCCTGATTCATATATAGGAATCGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGTTTTATGTAGTATAGATCTCCTGATTCATATATAGGAATCGAT  100

seq1  GGGTTTTTCCTAAGATGCCTCTTTACTCTGTGCATGACCCCCTTTGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTCCTAAGATGCCTCTTTACTCTGTGCATGACCCCCTTTGTTAT  150

seq1  ATCTAAGATTTGTAATTTTCTGAATCCTGTTTGTGACTTTTGGTGACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGATTTGTAATTTTCTGAATCCTGTTTGTGACTTTTGGTGACTAT  200

seq1  TAAACAGGAGTAGAGTCCTCTACAATAAGTCTGTAATTGTTTTAAAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGGAGTAGAGTCCTCTACAATAAGTCTGTAATTGTTTTAAAAATT  250

seq1  TTAGAATTACTTTAAAGGCATTTACCCTAAATTTCCTTTTAGCTGTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTACTTTAAAGGCATTTACCCTAAATTTCCTTTTAGCTGTTTTA  300

seq1  CTGTTTTGGGCTTTACATTAATGTGTTTGATCCAGTTTGAATTGATTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGGGCTTTACATTAATGTGTTTGATCCAGTTTGAATTGATTCCC  350

seq1  CCCCTCTTCTCTCTCTCTGTATACATCTGCCTGCATTATTCAGTTTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTTCTCTCTCTCTGTATACATCTGCCTGCATTATTCAGTTTCCCC  400

seq1  AGAACTGTTTTTTTAAAAGACTACTTTCCCCCCAGTGTATGTTTTTTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGTTTTTTTAAAAGACTACTTTCCCCCCAGTGTATGTTTTTTGGC  450

seq1  ACCTTTGCTAAAACTGAGAAGGCTGTAGCTGTGCATTATTTCTGGGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGCTAAAACTGAGAAGGCTGTAGCTGTGCATTATTTCTGGGTGAT  500

seq1  GAGGTTCATTTATGTACAAAGGTATGTCTGTGATGGAACCCACTGTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCATTTATGTACAAAGGTATGTCTGTGATGGAACCCACTGTGCCT  550

seq1  CTGAGTATATTTTCAGAAAACAATGTGATTACCTTACTCTTTCTACTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTATATTTTCAGAAAACAATGTGATTACCTTACTCTTTCTACTTAG  600

seq1  GACTCTTCTGGATTTCAAAGCATTTATGCTTCTACATTAAGCTAAAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCTGGATTTCAAAGCATTTATGCTTCTACATTAAGCTAAAGAGT  650

seq1  TTTTTCCTAGTTGTAAGAATCAAGTTCCCTATTGGTAGATGGTACAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTAGTTGTAAGAATCAAGTTCCCTATTGGTAGATGGTACAATTC  700

seq1  TAGATGTTAAACAGCTCAAAACTTTACCAGAAACTTCTTAGACCTGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTTAAACAGCTCAAAACTTTACCAGAAACTTCTTAGACCTGCAAA  750

seq1  GCGCTTCCAAGAAATTAGTTCATAGAAAATACAGAAATCAGCACCCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTCCAAGAAATTAGTTCATAGAAAATACAGAAATCAGCACCCTTTC  800

seq1  AATACAGCAGCAATAAAGTTGTTCAGAAAGAAATAATCAAGTCACATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGCAGCAATAAAGTTGTTCAGAAAGAAATAATCAAGTCACATTCA  850

seq1  TTTTATCTTACAAAATACCTAGAGATTAATGACACAAGAGATAACAGATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTTACAAAATACCTAGAGATTAATGACACAAGAGATAACAGATC  900

seq1  TCTAGGATAAAAATCGGAAGCACTGTATACAGAAGTTAACGAAGATATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGATAAAAATCGGAAGCACTGTATACAGAAGTTAACGAAGATATTA  950

seq1  GAAAGTAGAAAGACATACCTCATAGTTATGTTGCTACAAACAATCTACAT  1000
      |||||||| |||||||||||||||| |||| |||||||||||||||||||
seq2  GAAAGTAG-AAGACATACCTCATAG-TATG-TGCTACAAACAATCTACAT  997

seq1  ATTCAGTA-TCCCATCAAAATTCTAACTATATTCTCCAG-AGAACAATAA  1048
      |||||||| ||||||| |||||||||||||||||||||| ||||||||||
seq2  ATTCAGTATTCCCATC-AAATTCTAACTATATTCTCCAGAAGAACAATAA  1046

seq1  A-CCTTCACTGTTTAAGAACACAGAAAATTTGCAATGAC  1086
      | ||||||||| |||||||||||  |||||||| |||||
seq2  ACCCTTCACTG-TTAAGAACACAAGAAATTTGC-ATGAC  1083


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