BAC Information

Click to search

BAC

Clone NameB6Ng01-344G11
Chromosome9 (Build37)
Map Location 121,572,610 - 121,744,023
singlet/doubletdoublet
Overlap geneVipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13
Upstream geneLOC100040010, Ctnnb1, Ulk4, Trak1, Cck, Lyzl4
Downstream geneHigd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344G11.bB6Ng01-344G11.g
ACCGA126899GA126900
length1,197374
definitionB6Ng01-344G11.b B6Ng01-344G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,742,812 - 121,744,023)(121,572,610 - 121,573,293)
sequence
gaattccaagcccagggtcggctcaaggactatctagagcattggtgaag
gccaggaagcaaagttcaattttgcttaggtatttggcaagtcattgctt
ggaggcacctataacaaaacaatactgaaaagaagcacacagatccattc
gcaaggacaaaattggagcatacgtgctatgggatgccacagttccagga
cactaagttttcatgaaactcttcacctcgggactgtttcccggtttcta
aacctgtcaagcaagtcactactggagtggatgtagcaaatgatgttttc
cttacatcatcataagctctttccttgcctgtgggaaggaaggacagatg
gacaaggaggcatatgtcagaagcacttgattccaaagggctttaggtct
aaaccagtactttggggcttgtcttctgggtgaatgggtgacctcaaagt
atggtagggacatttgctgagctgtctgttcatgtgttttaatatgtgta
aattatacctcaaataaactgtatttacttatttttggtttttgacacac
agcgctctgtagcccaggctggcctttaatgcctggttctcctgttgaga
tccaaagtctgggactgttcgtatgtgccactcacccagctctagccccc
aactgtgaagaagaaatgatggctggagcctatgtccagagactgggatc
tagctggtctggagttgagctcagacatcctcagctttgacagctcccgg
gagatgctaatgtgcagccagagttgaaagctgctgacagaagggctact
cctgctgccacctgcagtcagggagtctgctctgccccgctttaggtgag
ggtgtccgagtgcgagcaagcgccttcttagattcactgttggacatgtg
ctagtcacgtgctagtcagtcgtacagtcagctctggcttctctgttctc
aggcaagatggcggctgatgagagctcggcagatactctgcgactccagt
tcaaggccatgcaggagctacagcaccgaaggttactgaagcagatggag
aaaagaagggagaaagagctgaccttgtcaagcaagctgacaccaggagg
gttcatggtgatcccgatggcctcagcctccctcgatagaggagcgaact
aaaccatattgagaaggtaaggacccttccgcacactgcagcaggtg
accctcgggctcccagctcctcccaggactcactggaggacagggcgcag
ggagcagtgggcaggctgtgaggagggggatgggggcggtgagaagagaa
caatatggagagaggaatgaagacagggctgttgaagggagcaaggaggt
ggttacctaggaagggctgtgtgagtcctgggctggcccaaaagtggatg
ggcagatgaatggatagatgggtgctgtgtgggcgagtggagagacagct
taagtgagtgggtgtggagacagcttaggtaagtgggtggttgatggatg
agcagatagagttgatgaatggatgtcttggtggtaaatgaatggccgag
ttgtcttgagtggggaggttttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_121742812_121744023
seq2: B6Ng01-344G11.b_44_1240 (reverse)

seq1  CACCTGCCTGCAGTGTGGCCGAAGGGTCCTTACCTCTTCTCAAATATGTT  50
      |||||| ||||||||| || |||||||||||||  |||||| |||||| |
seq2  CACCTG-CTGCAGTGT-GCGGAAGGGTCCTTAC--CTTCTC-AATATGGT  45

seq1  TTTTAGGTTCTGCTCCTCTGTGTCGA-GGAGGCTGAGGCCATCCGGGATC  99
      ||    |||| |||||||  | |||| ||||||||||||||| |||||||
seq2  TT---AGTTC-GCTCCTC--TATCGAGGGAGGCTGAGGCCAT-CGGGATC  88

seq1  ACCATGAACCCTTCCTGGTTGTCAGCTTTGCTTTGAC-AGCTCAGCTCTT  148
      ||||||||||| |||||| ||||||| |||| ||||| || |||||||||
seq2  ACCATGAACCC-TCCTGG-TGTCAGC-TTGC-TTGACAAGGTCAGCTCTT  134

seq1  TCTCCCTCTTTTTCTCCATCTGCTTCTGTAACCTTCGGTGCTGTAGCTCC  198
      |||||||  ||||||||||||||||| |||||||||||||||||||||||
seq2  TCTCCCTTCTTTTCTCCATCTGCTTCAGTAACCTTCGGTGCTGTAGCTCC  184

seq1  TGCATGGCCTTGAACTGGAGTCGCAGAGTATCTGCCGAGCTCTCATCAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGCCTTGAACTGGAGTCGCAGAGTATCTGCCGAGCTCTCATCAGC  234

seq1  CGCCATCTTGCCCTGAGAACAGAGAAGCCAGAGCTGACTGTACGACTGAC  298
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CGCCATCTTG-CCTGAGAACAGAGAAGCCAGAGCTGACTGTACGACTGAC  283

seq1  TAGCACGTGACTAGCACATGTCCAACAGTGAATCTAAGAAGGCGCTTGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACGTGACTAGCACATGTCCAACAGTGAATCTAAGAAGGCGCTTGCT  333

seq1  CGCACTCGGACACCCTCACCTAAAGCGGGGCAGAGCAGACTCCCTGACTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTCGGACACCCTCACCTAAAGCGGGGCAGAGCAGACTCCCTGACTG  383

seq1  CAGGTGGCAGCAGGAGTAGCCCTTCTGTCAGCAGCTTTCAACTCTGGCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGCAGCAGGAGTAGCCCTTCTGTCAGCAGCTTTCAACTCTGGCTG  433

seq1  CACATTAGCATCTCCCGGGAGCTGTCAAAGCTGAGGATGTCTGAGCTCAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAGCATCTCCCGGGAGCTGTCAAAGCTGAGGATGTCTGAGCTCAA  483

seq1  CTCCAGACCAGCTAGATCCCAGTCTCTGGACATAGGCTCCAGCCATCATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGACCAGCTAGATCCCAGTCTCTGGACATAGGCTCCAGCCATCATT  533

seq1  TCTTCTTCACAGTTGGGGGCTAGAGCTGGGTGAGTGGCACATACGAACAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCACAGTTGGGGGCTAGAGCTGGGTGAGTGGCACATACGAACAG  583

seq1  TCCCAGACTTTGGATCTCAACAGGAGAACCAGGCATTAAAGGCCAGCCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGACTTTGGATCTCAACAGGAGAACCAGGCATTAAAGGCCAGCCTG  633

seq1  GGCTACAGAGCGCTGTGTGTCAAAAACCAAAAATAAGTAAATACAGTTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAGAGCGCTGTGTGTCAAAAACCAAAAATAAGTAAATACAGTTTA  683

seq1  TTTGAGGTATAATTTACACATATTAAAACACATGAACAGACAGCTCAGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGTATAATTTACACATATTAAAACACATGAACAGACAGCTCAGCA  733

seq1  AATGTCCCTACCATACTTTGAGGTCACCCATTCACCCAGAAGACAAGCCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCCTACCATACTTTGAGGTCACCCATTCACCCAGAAGACAAGCCC  783

seq1  CAAAGTACTGGTTTAGACCTAAAGCCCTTTGGAATCAAGTGCTTCTGACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTACTGGTTTAGACCTAAAGCCCTTTGGAATCAAGTGCTTCTGACA  833

seq1  TATGCCTCCTTGTCCATCTGTCCTTCCTTCCCACAGGCAAGGAAAGAGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTCCTTGTCCATCTGTCCTTCCTTCCCACAGGCAAGGAAAGAGCT  883

seq1  TATGATGATGTAAGGAAAACATCATTTGCTACATCCACTCCAGTAGTGAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGATGTAAGGAAAACATCATTTGCTACATCCACTCCAGTAGTGAC  933

seq1  TTGCTTGACAGGTTTAGAAACCGGGAAACAGTCCCGAGGTGAAGAGTTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGACAGGTTTAGAAACCGGGAAACAGTCCCGAGGTGAAGAGTTTC  983

seq1  ATGAAAACTTAGTGTCCTGGAACTGTGGCATCCCATAGCACGTATGCTCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACTTAGTGTCCTGGAACTGTGGCATCCCATAGCACGTATGCTCC  1033

seq1  AATTTTGTCCTTGCGAATGGATCTGTGTGCTTCTTTTCAGTATTGTTTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTCCTTGCGAATGGATCTGTGTGCTTCTTTTCAGTATTGTTTTG  1083

seq1  TTATAGGTGCCTCCAAGCAATGACTTGCCAAATACCTAAGCAAAATTGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGTGCCTCCAAGCAATGACTTGCCAAATACCTAAGCAAAATTGAA  1133

seq1  CTTTGCTTCCTGGCCTTCACCAATGCTCTAGATAGTCCTTGAGCCGACCC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTCCTGGCCTTCACCAATGCTCTAGATAGTCCTTGAGCCGACCC  1183

seq1  TGGGCTTGGAATTC  1212
      ||||||||||||||
seq2  TGGGCTTGGAATTC  1197

seq1: chr9_121572610_121573293
seq2: B6Ng01-344G11.g_66_445

seq1  GAATTCACCCTCGGGCTCCCAGCTCCTCCCAGGACTCACTGGAGGACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTCGGGCTCCCAGCTCCTCCCAGGACTCACTGGAGGACAGG  50

seq1  GCGCAGGGAGCAGTGGGCAGGCTGTGAGGAGGGGGATGGGGGCGGTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGGGAGCAGTGGGCAGGCTGTGAGGAGGGGGATGGGGGCGGTGAGA  100

seq1  AGAGAACAATATGGAGAGAGGAATGAAGACAGGGCTGTTGAAGGGAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAATATGGAGAGAGGAATGAAGACAGGGCTGTTGAAGGGAGCAA  150

seq1  GGAGGTGGTTACCTAGGAAGGGCTGTGTGAGTCCTGGGCTGGCCCAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGTTACCTAGGAAGGGCTGTGTGAGTCCTGGGCTGGCCCAAAAG  200

seq1  TGGATGGGCAGATGAATGGATAGATGGGTGCTGTGTGGGCGAGTGGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGGCAGATGAATGGATAGATGGGTGCTGTGTGGGCGAGTGGAGAG  250

seq1  ACAGCTTAAGTGAGTGGGTGTGGAGACAGCTTAGGTAAGTGGGTGGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTAAGTGAGTGGGTGTGGAGACAGCTTAGGTAAGTGGGTGGTTGA  300

seq1  TGGATGAGCAGATAGAGTTGATGAATGGATGTCTTGGTGGTAAATGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAGCAGATAGAGTTGATGAATGGATGTCTTGGTGGTAAATGAATG  350

seq1  GCCGAGTTGTCATGAGTGGGGAGGTCAATAAATGTATAAGTGGCCAGGCA  400
      ||||||||||| |||||||||||||   ||                    
seq2  GCCGAGTTGTCTTGAGTGGGGAGGTTTTTA--------------------  380

seq1  TGGTAGCTCACACCTATAACCCCAGATGCAAAAGGCTGCGAGTTGGAAGG  450
                                                        
seq2  --------------------------------------------------  380

seq1  CAGCCAGGGCTACATAGTGAGTTCTAGACCAGCCTGGTTACAGTGTGAGA  500
                                                        
seq2  --------------------------------------------------  380

seq1  TTGACTGAAAACCCACTCAAGCACAAATAGACAAATGTCTGGTAAAGGGG  550
                                                        
seq2  --------------------------------------------------  380

seq1  CAGGTGGGTAGGCAGACAGGAACCTTTGACATTGTGACGCCATGTTGTTA  600
                                                        
seq2  --------------------------------------------------  380

seq1  CCAGTCAGGTTCATGCTGGAGACCTCAAAATGCAGTTACCAGAAATACGA  650
                                                        
seq2  --------------------------------------------------  380

seq1  CCAAAAAAAAAAAAAAAAAAACCCTAACATTTTA  684
                                        
seq2  ----------------------------------  380