BAC Information

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BAC

Clone NameB6Ng01-345C21
Chromosome9 (Build37)
Map Location 122,376,217 - 122,431,122
singlet/doubletdoublet
Overlap geneLOC100040193, LOC100040204
Upstream geneTrak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5
Downstream gene9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345C21.bB6Ng01-345C21.g
ACCGA127460GA127461
length9361,158
definitionB6Ng01-345C21.b B6Ng01-345C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,376,217 - 122,377,129)(122,429,971 - 122,431,122)
sequence
gaattcttctttgacaaatgggtaatttccacgtgtttaaaaaagcatat
ttggggctacccaggacatctttttgttgctgatttctagtttaatttca
agctggttagttttaaaaaaaatcatctattagctaaatctttgtatatc
ttggttcttttatatttcaggaaatgatgtggtgtgctgctgatatgtgt
gtgcgtgtttgttagtatatgttaattacatgttaattatgtatgatagt
gggtttggtgataaaattttatgcaagtatgtaatgcatttggccgtatc
catcgctcatttctgtcctcttcccatctccttggtcctagtttagggga
tattttatgcactcttgaacagaatattctagtaatgtcagcaaagccaa
aatggctggtggtgcctctgaattttccatggtccatggactatgtccac
tgggaaaaaagagttggtttgctatcagccaatttgccaactcctcttca
actctgtctgagctcagtctatacccaccaggagatctgttatttggtgg
gtatagatttaagttttagtatttattggtgatttgaccattttaaaatt
atgagtttccccctatttattccttggtaacaatcccagtacagaatcgt
acttttgtctttaagaatttagcgactgctgcttttttgtgattaatgtc
agctggtcattactctttcccccagcctttaacaccttaacctcctctta
tgtatctgtcgttaaagtgtgttccttataagacagtgacattgggtaaa
cgcttgctttctaaatcttaagccctcacgatttacattttaactggaga
tgttgttaacatttcagtgagagcgtttctgttgttgcgatcccgacctg
ccgactcatccattgatttcctgttcgttcatctgg
gaattccaaacagcttataggggtggggggagaaaaccaccacagcagcc
aatgagcatttacccaggaaaatgctcatctttggttggagagacttaaa
accattagtgtctacattagtgtcgaatgtgttatccacagtgttttcca
gagaagtgtgtgtttcacaaataagtaggcaatggagaggatggagccag
gaagccaagaagtgtgactcagaaatcactgtgaactttagtcgggcagc
cctgccaacttgctgctcatctcaaactctgtttcctcccagagacattt
caagttagtctcgcccaagttagtctcggggagccttttcatcgcctttg
taggtcaggggaggccttccagctgggtgctggttcagactccagtctgg
actgctgaggctccagtcaggacagcaaatggatagctggtttacctcac
acccttccccagaactccctaatgctggttgattccccagagctgatcca
aaccccagaaggttgctgaaagaaacgagagtgtgtacattggctcagca
gaactgcaaagtgctctccagctgggagacttgcagagaagatgcccaaa
agtacagacgaagcctgattcaataaacacggattgggggctgactgaag
tggttctgtagggagactcagagaccctactatttcattataattctcct
cccagtctctttcctgccttccccctttccttcctccctccttccctccc
tccttggtttttgtgtgcatgtgttggggtttgtgtgaatgcccgtgtat
gcacactcctcaggaggcagatgccaacctcaggtaccatccgcttgttt
tttgagttaggagctctcactgaagcctggctgcttccttggtgctatga
tcacaaagacaccaggatgccagtcttttctatgtgggttttcagatcaa
agtggtctctttgtcttcatggctggcacctttgctcatcagcatcctca
gtcttcaggcttgtcattgttctatctcacagatggggagactccacact
gtctctgtgtagggagaggaggtagctcctctagcttcctctgtctaaga
ctgctggttcactcaggaagtcaggtgaaagatcctatcctggtggggga
gattgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_122376217_122377129
seq2: B6Ng01-345C21.b_46_981

seq1  GAATTCTTCTTTGACAAATGGGTAATTTCCACGTGTTTAAAAAAGCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTGACAAATGGGTAATTTCCACGTGTTTAAAAAAGCATAT  50

seq1  TTGGGGCTACCCAGGACATCTTTTTGTTGCTGATTTCTAGTTTAATTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCTACCCAGGACATCTTTTTGTTGCTGATTTCTAGTTTAATTTCA  100

seq1  AGCTGGTTAGTTTTAAAAAAAATCATCTATTAGCTAAATCTTTGTATATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTTAGTTTTAAAAAAAATCATCTATTAGCTAAATCTTTGTATATC  150

seq1  TTGGTTCTTTTATATTTCAGGAAATGATGTGGTGTGCTGCTGATATGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTTTTATATTTCAGGAAATGATGTGGTGTGCTGCTGATATGTGT  200

seq1  GTGCGTGTTTGTTAGTATATGTTAATTACATGTTAATTATGTATGATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTGTTTGTTAGTATATGTTAATTACATGTTAATTATGTATGATAGT  250

seq1  GGGTTTGGTGATAAAATTTTATGCAAGTATGTAATGCATTTGGCCGTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGGTGATAAAATTTTATGCAAGTATGTAATGCATTTGGCCGTATC  300

seq1  CATCGCTCATTTCTGTCCTCTTCCCATCTCCTTGGTCCTAGTTTAGGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCTCATTTCTGTCCTCTTCCCATCTCCTTGGTCCTAGTTTAGGGGA  350

seq1  TATTTTATGCACTCTTGAACAGAATATTCTAGTAATGTCAGCAAAGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGCACTCTTGAACAGAATATTCTAGTAATGTCAGCAAAGCCAA  400

seq1  AATGGCTGGTGGTGCCTCTGAATTTTCCATGGTCCATGGACTATGTCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGGTGGTGCCTCTGAATTTTCCATGGTCCATGGACTATGTCCAC  450

seq1  TGGGAAAAAAGAGTTGGTTTGCTATCAGCCAATTTGCCAACTCCTCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAAAAGAGTTGGTTTGCTATCAGCCAATTTGCCAACTCCTCTTCA  500

seq1  ACTCTGTCTGAGCTCAGTCTATACCCACCAGGAGATCTGTTATTTGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCTGAGCTCAGTCTATACCCACCAGGAGATCTGTTATTTGGTGG  550

seq1  GTATAGATTTAAGTTTTAGTATTTATTGGTGATTTGACCATTTTAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGATTTAAGTTTTAGTATTTATTGGTGATTTGACCATTTTAAAATT  600

seq1  ATGAG-TTCCCCCTATTTATTCC-TGGTAACAATCCCAGTACAGAATCGT  648
      ||||| ||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATGAGTTTCCCCCTATTTATTCCTTGGTAACAATCCCAGTACAGAATCGT  650

seq1  AC-TTTGTC-TTAAGAATTTAGCGACTGCTGC-TTTTTGTGATTAATGTC  695
      || |||||| |||||||||||||||||||||| |||||||||||||||||
seq2  ACTTTTGTCTTTAAGAATTTAGCGACTGCTGCTTTTTTGTGATTAATGTC  700

seq1  AGCTGGTCAGTAC-CTT--CCCCAGCCTTTAACA-CTTAACC-CCTC-TA  739
      ||||||||| ||| |||  ||||||||||||||| ||||||| |||| ||
seq2  AGCTGGTCATTACTCTTTCCCCCAGCCTTTAACACCTTAACCTCCTCTTA  750

seq1  TGTATCTGTTGTTAAAGTGTGTTCCTTAT-AGACAG-GACA-TGGGTAAA  786
      ||||||||| ||||||||||||||||||| |||||| |||| ||||||||
seq2  TGTATCTGTCGTTAAAGTGTGTTCCTTATAAGACAGTGACATTGGGTAAA  800

seq1  CGC-TGCTTTCTAAATCTTA--GCCTCACGA-TTACATTTTAACTGGAG-  831
      ||| ||||||||||||||||   |||||||| ||||||||||||||||| 
seq2  CGCTTGCTTTCTAAATCTTAAGCCCTCACGATTTACATTTTAACTGGAGA  850

seq1  TGTTGTTAACA-TTCAGTGAGAGCGTTTCTGTTGTTG-GA-CCCGAGCTG  878
      ||||||||||| ||||||||||||||||||||||||| || ||||| |||
seq2  TGTTGTTAACATTTCAGTGAGAGCGTTTCTGTTGTTGCGATCCCGACCTG  900

seq1  CCGTCTC-GCCGTTGGTTT-CTGTTCGTTCCATCTGG  913
      ||| |||  || ||| ||| ||||||||| |||||||
seq2  CCGACTCATCCATTGATTTCCTGTTCGTT-CATCTGG  936

seq1: chr9_122429971_122431122
seq2: B6Ng01-345C21.g_62_1219 (reverse)

seq1  GCCCAA---CCCCCAACA-GATAGGCTC-TTCA-CTGACTT-CTG-GTGG  42
      ||||||   |||||| || |||||| || |||| ||||||| ||| ||| 
seq2  GCCCAATCTCCCCCACCAGGATAGGATCTTTCACCTGACTTCCTGAGTGA  50

seq1  ACACAGCAGAC-TAGACAGA-GAAGCTAGAGGGGCTACTTCCTCT-CCTA  89
      || |||||| | |||||||| ||||||||||| ||||| |||||| ||||
seq2  AC-CAGCAGTCTTAGACAGAGGAAGCTAGAGGAGCTACCTCCTCTCCCTA  99

seq1  CACAGGAGACAGTGTGG-GTCTCCCCAATTCTGTGAGATAGAACAATGAC  138
      |||| |||||||||||| |||||||||  |||||||||||||||||||||
seq2  CACA-GAGACAGTGTGGAGTCTCCCCA--TCTGTGAGATAGAACAATGAC  146

seq1  AAGCCTGGAAGACTGGGGATGCCTGATGGGC-AAGGTGCCAGCCATGAAG  187
      |||||| |||||||| ||||| |||||| || ||||||||||||||||||
seq2  AAGCCT-GAAGACTGAGGATG-CTGATGAGCAAAGGTGCCAGCCATGAAG  194

seq1  ACAAAGAGACCACTTTGATCTTGAAAACCCACATAG-AAAGGCTGGCATC  236
      |||||||||||||||||||| ||||||||||||||| |||| ||||||||
seq2  ACAAAGAGACCACTTTGATC-TGAAAACCCACATAGAAAAGACTGGCATC  243

seq1  CTGGTGTCTTTTGTGATCATAGCACCAAGGAAGCAGCCAGGCTTCAGTGA  286
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTC-TTTGTGATCATAGCACCAAGGAAGCAGCCAGGCTTCAGTGA  292

seq1  GAGCTCCTAACTCAAAAAACAAGCGGATGGTACCTGAGGTTGGCATCTGC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCTAACTCAAAAAACAAGCGGATGGTACCTGAGGTTGGCATCTGC  342

seq1  CTCCTGAGGAGTGTGCATACACGGGCATTCACACAAACCCCAACACATGC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGGAGTGTGCATACACGGGCATTCACACAAACCCCAACACATGC  392

seq1  ACACAAAAACCAAGGAGGGAGGGAAGGAGGGAGGAAGGAAAGGGGGAAGG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAACCAAGGAGGGAGGGAAGGAGGGAGGAAGGAAAGGGGGAAGG  442

seq1  CAGGAAAGAGACTGGGAGGAGAATTATAATGAAATAGTAGGGTCTCTGAG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGAGACTGGGAGGAGAATTATAATGAAATAGTAGGGTCTCTGAG  492

seq1  TCTCCCTACAGAACCACTTCAGTCAGCCCCCAATCCGTGTTTATTGAATC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTACAGAACCACTTCAGTCAGCCCCCAATCCGTGTTTATTGAATC  542

seq1  AGGCTTCGTCTGTACTTTTGGGCATCTTCTCTGCAAGTCTCCCAGCTGGA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCGTCTGTACTTTTGGGCATCTTCTCTGCAAGTCTCCCAGCTGGA  592

seq1  GAGCACTTTGCAGTTCTGCTGAGCCAATGTACACACTCTCGTTTCTTTCA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTTTGCAGTTCTGCTGAGCCAATGTACACACTCTCGTTTCTTTCA  642

seq1  GCAACCTTCTGGGGTTTGGATCAGCTCTGGGGAATCAACCAGCATTAGGG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTTCTGGGGTTTGGATCAGCTCTGGGGAATCAACCAGCATTAGGG  692

seq1  AGTTCTGGGGAAGGGTGTGAGGTAAACCAGCTATCCATTTGCTGTCCTGA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGGGGAAGGGTGTGAGGTAAACCAGCTATCCATTTGCTGTCCTGA  742

seq1  CTGGAGCCTCAGCAGTCCAGACTGGAGTCTGAACCAGCACCCAGCTGGAA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCTCAGCAGTCCAGACTGGAGTCTGAACCAGCACCCAGCTGGAA  792

seq1  GGCCTCCCCTGACCTACAAAGGCGATGAAAAGGCTCCCCGAGACTAACTT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCCCTGACCTACAAAGGCGATGAAAAGGCTCCCCGAGACTAACTT  842

seq1  GGGCGAGACTAACTTGAAATGTCTCTGGGAGGAAACAGAGTTTGAGATGA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGAGACTAACTTGAAATGTCTCTGGGAGGAAACAGAGTTTGAGATGA  892

seq1  GCAGCAAGTTGGCAGGGCTGCCCGACTAAAGTTCACAGTGATTTCTGAGT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAGTTGGCAGGGCTGCCCGACTAAAGTTCACAGTGATTTCTGAGT  942

seq1  CACACTTCTTGGCTTCCTGGCTCCATCCTCTCCATTGCCTACTTATTTGT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTCTTGGCTTCCTGGCTCCATCCTCTCCATTGCCTACTTATTTGT  992

seq1  GAAACACACACTTCTCTGGAAAACACTGTGGATAACACATTCGACACTAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACACACTTCTCTGGAAAACACTGTGGATAACACATTCGACACTAA  1042

seq1  TGTAGACACTAATGGTTTTAAGTCTCTCCAACCAAAGATGAGCATTTTCC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACACTAATGGTTTTAAGTCTCTCCAACCAAAGATGAGCATTTTCC  1092

seq1  TGGGTAAATGCTCATTGGCTGCTGTGGTGGTTTTCTCCCCCCACCCCTAT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAATGCTCATTGGCTGCTGTGGTGGTTTTCTCCCCCCACCCCTAT  1142

seq1  AAGCTGTTTGGAATTC  1152
      ||||||||||||||||
seq2  AAGCTGTTTGGAATTC  1158