BAC Information

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BAC

Clone NameB6Ng01-345J17
Chromosome5 (Build37)9 (Build37)
Map Location 144,956,122 - 144,957,17723,247,857 - 23,248,013
singlet/doubletsingletsinglet
Overlap gene2210010N04Rik
Upstream gene4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8
Downstream geneBri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345J17.bB6Ng01-345J17.g
ACCGA127750GA127751
length1,054423
definitionB6Ng01-345J17.b B6Ng01-345J17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(144,956,122 - 144,957,177)(23,247,857 - 23,248,013)
sequence
gaattcctgatcttgccttcaccttcagagtacagacatggcgtgcctgg
cgtatttatctagattttctttttttttttttttttttttttttttttgt
gacagtcttggtatgtagtcctgggtagtctcaaactcacgatcctcctg
cctcagtttcctgagtgcagggcctatgggcatccagccctttgcttaac
ttttgaagcaaaactccatttggaaaacctgctgaggagtgacccgactg
atgcctggagacctgaaccccactgttatttttcctagaggtgatttggg
gtctctaggtgtggaagggtcctccctgcctctgcctctctagggccaga
atgtatggagggctctgagttcctggcctggaaagatgggaggtattgca
ggcagggaccggggctgagggacccaaacagtagttaccacggctcttcc
ccgcagcatccctcacagactcagaacatgagtgggagcggccccccgca
gtttcacacctctggcattttgccagtgctgcagaaatggctgactctga
cctgactccttgggtgtggggccctgggtgatgccctcccatacagcaca
agaaagatttcagttctggttctgcaggctcagaccatccttgcctccag
gtgaggagtggcctcagcagcaaacaggacctggaccgcgggcctcccga
tccctggacatgttccttgggaccctggtggcattggcccggacagagat
gtggtcccagcctccctacaatcggaaagccatgtcacttaggatttaag
tatcccaccaaaagctctcccacaactcccatgcataaacagtgtgacag
aagagtcccagatttccactgcactcacgccaatgccatagttcccagcc
ctgtctcttgggctcccgaggctggacactcaatggcggacgacacacgg
tccccgggctcaggccatggctttccctgggacttgtggcatcatcagac
ctggacagacttttgtggggcagctggatacagaaggggagaacagaggg
ggga
ctttcattcccccaccaccaccacccccaggaggaggtcatacatttaca
ccacactttcaaagacatctctaaagtagaccaataataaatgatccaga
gtgtggctcaggttggtagggtgcttgcttctcaagcaggtaatccaggc
tgtggctggagccaggatgggcttgtaggaggaagtggaggactggccca
catggtgactcacaaccatctgtaatgggatctgatgccctcttctggtg
tctctgaaaacagctaccatgtactcgaagaaagaaagaaagaaagaaag
aaagaaagaaagagagagagagagagagagagagagagagagagagagag
agagagagaaagaaagaaagaaagaaagaaagtaagaaagaaagaaagaa
agaaagagagaaagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_144956122_144957177
seq2: B6Ng01-345J17.b_46_1099

seq1  GAATTCCTGATCTTGCCTTCACCTTCAGAGTACAGACATGGCGTGCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCTTGCCTTCACCTTCAGAGTACAGACATGGCGTGCCTGG  50

seq1  CGTATTTATCTAGATTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTTATCTAGATTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT  100

seq1  GACAGTCTTGGTATGTAGTCCTGGGTAGTCTCAAACTCACGATCCTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCTTGGTATGTAGTCCTGGGTAGTCTCAAACTCACGATCCTCCTG  150

seq1  CCTCAGTTTCCTGAGTGCAGGGCCTATGGGCATCCAGCCCTTTGCTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTTCCTGAGTGCAGGGCCTATGGGCATCCAGCCCTTTGCTTAAC  200

seq1  TTTTGAAGCAAAACTCCATTTGGAAAACCTGCTGAGGAGTGACCCGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGCAAAACTCCATTTGGAAAACCTGCTGAGGAGTGACCCGACTG  250

seq1  ATGCCTGGAGACCTGAACCCCACTGTTATTTTTCCTAGAGGTGATTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGAGACCTGAACCCCACTGTTATTTTTCCTAGAGGTGATTTGGG  300

seq1  GTCTCTAGGTGTGGAAGGGTCCTCCCTGCCTCTGCCTCTCTAGGGCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAGGTGTGGAAGGGTCCTCCCTGCCTCTGCCTCTCTAGGGCCAGA  350

seq1  ATGTATGGAGGGCTCTGAGTTCCTGGCCTGGAAAGATGGGAGGTATTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGGAGGGCTCTGAGTTCCTGGCCTGGAAAGATGGGAGGTATTGCA  400

seq1  GGCAGGGACCGGGGCTGAGGGACCCAGACAGTAGTTACCACGGCTCTTCC  450
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGCAGGGACCGGGGCTGAGGGACCCAAACAGTAGTTACCACGGCTCTTCC  450

seq1  CCGCAGCATCCCTCACAGACTCAGAACATGAGTGGGAGCGGCCCCCCGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGCATCCCTCACAGACTCAGAACATGAGTGGGAGCGGCCCCCCGCA  500

seq1  GTTTCACACCTCTGGCATTTTGCCAGTGCTGCAGAAATGGCTGACTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACACCTCTGGCATTTTGCCAGTGCTGCAGAAATGGCTGACTCTGA  550

seq1  CCTGACTCCTTGGGTGTGGGGCCCTGGGTGATGCCCTCCCATACAGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTCCTTGGGTGTGGGGCCCTGGGTGATGCCCTCCCATACAGCACA  600

seq1  AGAAAGATTTCAGTTCTGGTTCTGCAGGCTCAGACCATCCTTGCCTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATTTCAGTTCTGGTTCTGCAGGCTCAGACCATCCTTGCCTCCAG  650

seq1  GTGAGGAGTGGCCTCAGCAGCAAACAGGACCTGGACCGCGGGCCTCCCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAGTGGCCTCAGCAGCAAACAGGACCTGGACCGCGGGCCTCCCGA  700

seq1  TCCCTGGACATGTTCCTTGGGACCCTGGTGGCATTGGCCCGGACAGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGACATGTTCCTTGGGACCCTGGTGGCATTGGCCCGGACAGAGAT  750

seq1  GTGGTCCCAGCCTCCCTACAATCGGAAAGCCATGTCACTTAGGATTTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCCAGCCTCCCTACAATCGGAAAGCCATGTCACTTAGGATTTAAG  800

seq1  TATCCCACCAAAAGCTCTCCCACAAACTCCCATGCATAAACAGTGTGACA  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATCCCACCAAAAGCTCTCCCAC-AACTCCCATGCATAAACAGTGTGACA  849

seq1  GAAGAGTCCCAGATTTCCACTGCACTCACGCCAATGCCATAG-TCCCAGC  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAAGAGTCCCAGATTTCCACTGCACTCACGCCAATGCCATAGTTCCCAGC  899

seq1  CCTGTCCCTTGGGCTCCCGAGGCTGGACAC-CCATG--CGACGACACACC  946
      |||||| ||||||||||||||||||||||| | |||   |||||||||| 
seq2  CCTGTCTCTTGGGCTCCCGAGGCTGGACACTCAATGGCGGACGACACACG  949

seq1  GTCCCCCGGCTCAGGCCATGGC--TCCCCTGGACTTTGTTGGCAATCACC  994
      |||||| |||||||||||||||  ||||  ||||||   |||| ||||  
seq2  GTCCCCGGGCTCAGGCCATGGCTTTCCCTGGGACTT--GTGGC-ATCA-T  995

seq1  CAGACCTGGAACAGACTTTTGTTGGGGCAGCTGGATACAGAAGGGGGAGA  1044
      ||||||||| ||||||||||| |||||||||||||||||||| |||||||
seq2  CAGACCTGG-ACAGACTTTTG-TGGGGCAGCTGGATACAGAA-GGGGAGA  1042

seq1  CCAGAGGGGGGA  1056
       |||||||||||
seq2  ACAGAGGGGGGA  1054

seq1: chr9_23247857_23248013
seq2: B6Ng01-345J17.g_347_492 (reverse)

seq1  TCTCTCTCTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  50
      ||||||||     ||||||| |||||||||||||||||||||||| ||||
seq2  TCTCTCTC-----TCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTACTTT  45

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCCCTTCCTTC  100
      |||||||||||||||||||||| ||| |||||||||||||| ||      
seq2  CTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCT------  89

seq1  CTTCCTTCCTCCCTCCCTTCTCTCTTTC-TTCTTTCTTTCTTTCTTTCTT  149
      ||  ||  ||| ||| | |||||||||| |||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTC-TCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTT  138

seq1  TCTTTCTT  157
      ||||||||
seq2  TCTTTCTT  146