BAC Information

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BAC

Clone NameB6Ng01-345L13
Chromosome9 (Build37)
Map Location 106,503,550 - 106,662,785
singlet/doubletdoublet
Overlap geneLOC100041096, Grm2, Tex264, Rad54l2
Upstream genePik3r4, E330026B02Rik, EG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4
Downstream geneLOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345L13.bB6Ng01-345L13.g
ACCGA127827GA127828
length1,187372
definitionB6Ng01-345L13.b B6Ng01-345L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,503,550 - 106,504,737)(106,662,157 - 106,662,785)
sequence
gaattccaggttagcaaaggctacatatgaaaactctgtctgtctatgct
taacgttaaaatcctaaaagaaattgaaaataagattataaatattgaag
tttaggaagcagatttctgactattgacacaatatgagaatctagtctac
tcatataatctactgaaatcattaaaatactaacatatatctgtgcaaca
ttttcttattggtttgcggaacagtgattattattattttttacacacat
tcagttgtgttatactttatttttttaatatttaatatttttatttcatg
gaacagtgattattaataggcaatatggaaccttctacccagacttcagt
aaaagccttttctcaatggctggatgtggctggaaagccaatgtcttgaa
ttaggaagtagaagcagtgctccttcaccgtgctccctccccatgctccc
tcctctgtttcctcactgtgctccctctctgtgctccctccctgtgctcc
cttcttcccctagaagtctgaaggaagggctgctccagatccagcagcca
ttacaattagcagagaaggcaactgagtctaaactgcagatcatcagatc
actttgggtcagaggttctaccaagacatcccaaattaaaagaagagaaa
tcaactgtctagtccaaaacacgaacagacagttccacagaaaaagaaag
agctggagaaaaatatcctgaacatatgtaaggatgcttaattcgtccat
aaaaaaaataaaaataaaaataaaggaacatattggtgacaggtcctctg
cgttggcaagggtggagagaaagaagcagcagtatatagtgtggctcaga
atttaaattggcaaaagtctttgaataacagtttgacagcatctaccaag
cacaaaaatgcagcaactacttgctatagttatttctaccaatgggattt
tcccacagaaatattgtcaacagggtatggtgacacatgccagctgtttg
agaagttgaggcaggtggatcgtagttcaaattttcaacgtgacaagatg
aaaagtagtacgtactgacattaactcagataagaaatacaaacatacgg
gcctggtcaggattattcttggtcttacacataggaatatggtcctagtc
caatgctaggttcaactactaggccaagtgaaatatg
ttagttttttgtgtctaaatgctttgttgttggcagttgcgtgatggaag
ggcacaggcttcacagaaacaaaagtggagaggaaagagtctttttttgt
tgttgttttttgtttttgtttttcaggacagggtttctctgtagaccagg
ctggccttgaactcagaaatccgcctgcctctgcctcctgagtgctggga
ttaaaggcgttgcaccaccatgcccggtgagggaagagtcttaatgtgtg
tattttgacaagtagtggtggagttttttgtttgtttgtttttttggttt
ttttggtggtgttttttgtctgatcccattacatattgttgtgagccaca
atgtagttgctgagtattgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_106503550_106504737
seq2: B6Ng01-345L13.b_49_1235

seq1  GAATTCCAGGTTAGCAAAGGCTACATATGAAAACTCTGTCTGTCTATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTAGCAAAGGCTACATATGAAAACTCTGTCTGTCTATGCT  50

seq1  TAACGTTAAAATCCTAAAAGAAATTGAAAATAAGATTATAAATATTGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTTAAAATCCTAAAAGAAATTGAAAATAAGATTATAAATATTGAAG  100

seq1  TTTAGGAAGCAGATTTCTGACTATTGACACAATATGAGAATCTAGTCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAAGCAGATTTCTGACTATTGACACAATATGAGAATCTAGTCTAC  150

seq1  TCATATAATCTACTGAAATCATTAAAATACTAACATATATCTGTGCAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAATCTACTGAAATCATTAAAATACTAACATATATCTGTGCAACA  200

seq1  TTTTCTTATTGGTTTGCGGAACAGTGATTATTATTATTTTTTACACACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTATTGGTTTGCGGAACAGTGATTATTATTATTTTTTACACACAT  250

seq1  TCAGTTGTGTTATACTTTATTTTTTTAATATTTAATATTTTTATTTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTGTTATACTTTATTTTTTTAATATTTAATATTTTTATTTCATG  300

seq1  GAACAGTGATTATTAATAGGCAATATGGAACCTTCTACCCAGACTTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTGATTATTAATAGGCAATATGGAACCTTCTACCCAGACTTCAGT  350

seq1  AAAAGCCTTTTCTCAATGGCTGGATGTGGCTGGAAAGCCAATGTCTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCTTTTCTCAATGGCTGGATGTGGCTGGAAAGCCAATGTCTTGAA  400

seq1  TTAGGAAGTAGAAGCAGTGCTCCTTCACCGTGCTCCCTCCCCATGCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAGTAGAAGCAGTGCTCCTTCACCGTGCTCCCTCCCCATGCTCCC  450

seq1  TCCTCTGTTTCCTCACTGTGCTCCCTCTCTGTGCTCCCTCCCTGTGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTTTCCTCACTGTGCTCCCTCTCTGTGCTCCCTCCCTGTGCTCC  500

seq1  CTTCTTCCCCTAGAAGTCTGAAGGAAGGGCTGCTCCAGATCCAGCAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCCCTAGAAGTCTGAAGGAAGGGCTGCTCCAGATCCAGCAGCCA  550

seq1  TTACAATTAGCAGAGAAGGCAACTGAGTCTAAACTGCAGATCATCAGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATTAGCAGAGAAGGCAACTGAGTCTAAACTGCAGATCATCAGATC  600

seq1  ACTTTGGGTCAGAGGTTCTACCAAGACATCCCAAATTAAAAGAAGAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGGTCAGAGGTTCTACCAAGACATCCCAAATTAAAAGAAGAGAAA  650

seq1  TCAACTGTCTAGTCCAAAACACGAACAGACAGTTCCACAGAAAAAGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGTCTAGTCCAAAACACGAACAGACAGTTCCACAGAAAAAGAAAG  700

seq1  AGCTGGAGAAAAATATCCTGAACATATGTAAGGATGCTTAATTCGTCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGAAAAATATCCTGAACATATGTAAGGATGCTTAATTCGTCCAT  750

seq1  AAAAAAAATAAAAATAAAAATAAAGGAACATATTGGTGACAGGTCCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATAAAAATAAAAATAAAGGAACATATTGGTGACAGGTCCTCTG  800

seq1  CGTTGGCAAGGGTGGAGAGAAAGAAGCAGCAGTATATAGTGTGGCTCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGCAAGGGTGGAGAGAAAGAAGCAGCAGTATATAGTGTGGCTCAGA  850

seq1  ATTTAAATTGGCAAAAGTCTTTGAATAACAGTTTGACAGCATCTACCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATTGGCAAAAGTCTTTGAATAACAGTTTGACAGCATCTACCAAG  900

seq1  CACAAAAATGCAGCAACTACTTGCTATAGTTA-TTCTACCAATGGGATTT  949
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CACAAAAATGCAGCAACTACTTGCTATAGTTATTTCTACCAATGGGATTT  950

seq1  TCCCCACAGAAATATTGTCAACAGGGTATGGTGACACATGCCAGCTGTTT  999
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CCCACAGAAATATTGTCAACAGGGTATGGTGACACATGCCAGCTGTTT  999

seq1  GAGAAGTTGAGGCAGGTGGATCGTAAGTTCAAAATTTCAACGTGACAAGA  1049
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  GAGAAGTTGAGGCAGGTGGATCGT-AGTTCAAATTTTCAACGTGACAAGA  1048

seq1  TGAAAAGTTAGTACGTACTTGACATTAAACTCAGATTAGGAAATACAAAC  1099
      ||||||| |||||||||| ||||||| |||||||| || |||||||||||
seq2  TGAAAAG-TAGTACGTAC-TGACATT-AACTCAGA-TAAGAAATACAAAC  1094

seq1  ATA-GGGGCTGGTCAGAATTA-TCTT-GTC-TACACATAGAAATATTGGC  1145
      ||| ||| |||||||| |||| |||| ||| ||||||||| |||||  | 
seq2  ATACGGGCCTGGTCAGGATTATTCTTGGTCTTACACATAGGAATAT--GG  1142

seq1  CCCTAAATCCATGGTAGTTTCAACTACTAAGCCAA-TG-AATATG  1188
       ||||   | ||| ||| ||||||||||| ||||| || ||||||
seq2  TCCTAGTCCAATGCTAGGTTCAACTACTAGGCCAAGTGAAATATG  1187

seq1: chr9_106662157_106662785
seq2: B6Ng01-345L13.g_68_445 (reverse)

seq1  GTTCAATTCTCAGCAACTACATTGTGGCTCACAACCATCTGTAATGGGAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCGAGGCCCTCTTCTGGTGTGTCTAAAGACTGTGACAGTGTGTACATACA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TATAATTCTTTAAAAATTACTGAAGAAGAAAAAAAGAAACCACTACTTAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGGAGTGGAGACAGACCTTTTAATCCAGCACTTCAGAGGTAGAGACAGGA  200
                                                        
seq2  --------------------------------------------------  0

seq1  GGATCTCTGGGTTCAAGGCCAGCCCTGGTCTATGGAGTTCCAGGACAGGC  250
                                                        
seq2  --------------------------------------------------  0

seq1  AGGGCTATACAGAGAA---ACCCTGTTTCAAAAATAAATAAATAAATAAA  297
       |  | ||||  || |   ||  |||  |  | |  ||||  ||   |  
seq2  -GTTCAATACTCAGCAACTACATTGTGGCTCACAACAATATGTA---ATG  46

seq1  CAAACAAACAAAAAACACCACCAAAAAAACCAAAAAAACAAACAAACAAA  347
        | || |||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGACAAAAAACACCACCAAAAAAACCAAAAAAACAAACAAACAAA  96

seq1  AAACTCCACCACTACTTGTCAAAATACACACATTAAGACTCTTCCCTCAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCACCACTACTTGTCAAAATACACACATTAAGACTCTTCCCTCAC  146

seq1  CGGGCATGGTGGTGCAACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCATGGTGGTGCAACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGC  196

seq1  AGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGAAACCCTGTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGAAACCCTGTC  246

seq1  CTGAAAAACAAAAACAAAAAACAACAACAAAAAAAGACTCTTTCCTCTCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAACAAAAACAAAAAACAACAACAAAAAAAGACTCTTTCCTCTCC  296

seq1  ACTTTTGTTTCTGTGAAGCCTGTGCCCTTCCATCACGCAACTGCCAACAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTTTCTGTGAAGCCTGTGCCCTTCCATCACGCAACTGCCAACAA  346

seq1  CAAAGCATTTAGACACAAAAAACTAAGAATTC  629
      ||||||||||||||||||||||||||||||||
seq2  CAAAGCATTTAGACACAAAAAACTAAGAATTC  378