BAC Information

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BAC

Clone NameB6Ng01-345N02
Chromosome9 (Build37)
Map Location 8,961,774 - 9,101,385
singlet/doubletdoublet
Overlap genePgr, 9030420J04Rik
Upstream geneYap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6
Downstream geneCntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345N02.bB6Ng01-345N02.g
ACCGA127893GA127894
length949961
definitionB6Ng01-345N02.b B6Ng01-345N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,961,774 - 8,962,723)(9,100,429 - 9,101,385)
sequence
gaattctacatcttgaaaccaaggggccaggaggaaggtctcttccacac
tgggtagagtgtgagcttagagacctcaaagtccagtcccccaatgacac
acttcctccgacaaggccacacttcctccaataatgccatatctcctaat
aatggcacttcccattggtcaagcatttgaaaccacgacatttctctaat
ctctagttacaggatgaactctggagctctgtaagcattttcctttttag
acagatcaggctccaagcctaggaaatggtaccattaacccaatctttca
cagtgtacctaaaaactaatataaagtagacaatccctcttagatgtgtc
caaaggcttatcttttgggtcattctagatcttgttagttgatgactaat
gttagtcatctcagtgtagtttccccaaattctttcttgaagttggcttt
taaaagacaatatgatactgttgtgttcaatacggaccatatgttgatca
atgttgaccatatgttgaccatacaaccatactatatgcacacacacaca
catacatatgtggttatctgagacatttttgttacaagcttttatttcta
gcatataaaaaacacataaaatgagagtcaaagtcattttaaaaaagcta
cccacaatcaacttgaagaataaagcaccagtgctgaagaccaaagaaaa
tacacagagcctcaaagaaacacaatgttactgtgtcaaagaaagaacag
agagccttcagaaaggtacagttagcaaaactagctaactgtcttagtca
gggtttctattcctggacaaaacatcatgaccaagaagcaagttggggag
gaaagggtttagtcagctcacacttccacactgctgttcatcactaatga
agtcagactgaaactacaggcatgtcatgaagcagaagctgatgcagag

gaattcatcttcgcaagcaagtctataaaactaatgaataaaaaatgctg
aaatgatccatttactgttagctagcaagttggcacaaaaatgtttggtg
ggagccagaggggaatcttgctgatgacgtcaccaacgatgacatcaccc
aggctgagctctagaactttgcagagttttgtcaggtcctctctctgtac
acttccctcccaatttatgcattccagtgtgacttttccatagtgaaatt
tatggctcctatttcaaaatgtttccaaaatctctgtcggtgttctcccc
cagagaaccaacagtgactcagagcaactttgagattcaggagaaatgtg
aaatattttctgtttgtgttttgaggatgggctctcaaaaaactgtcaga
attctgcctcagtctccagggtggacagactgcaaaaagcaattctaaga
ctgcaaaaacactgagggatgctctgtgtgggggctgaaacatgccatac
cagaatataggagagagtgatcaaaactttgtctgttatacgtcaagttc
atgtctcaaacacacaaactagcaaaaacagtgtaaaaaatcatggcctg
ggtggtcatggaaacctggaaagatggtttttaatactatcttttattga
gttttcagaatttcatgcatatttatgatcagattagatcctgtttactc
tgtccctctaatcatcgcataaccgactgtccctactcttccctagtttg
tatattcttacgagaaataattatttattccatgatccaatgacaccaat
ttttgctaaccatatttttcttaaattaagtctactgataatttgctatc
caaaggcttacaccactgtagtaaatgtgacccatgcatccacctaaatg
tgcagcatttgtctcctctatcagtatactatacagcttagcaaacctgg
aaagtgattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_8961774_8962723
seq2: B6Ng01-345N02.b_43_991

seq1  GAATTCTACATCTTGAAACCAAGGCAGCCAGGAGGAAGGTCTCTTCCACA  50
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  GAATTCTACATCTTGAAACCAAGG-GGCCAGGAGGAAGGTCTCTTCCACA  49

seq1  CTGGGTAGAGTGTGAGCTTAGAGACCTCAAAGTCCAGTCCCCCAATGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAGAGTGTGAGCTTAGAGACCTCAAAGTCCAGTCCCCCAATGACA  99

seq1  CACTTCCTCCAACAAGGCCACACTTCCTCCAATAATGCCATATCTCCTAA  150
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTCCGACAAGGCCACACTTCCTCCAATAATGCCATATCTCCTAA  149

seq1  TAATGCCACTTCCCATTGGTCAAGCATTTGAAACCACGACATTTCTCTAA  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCACTTCCCATTGGTCAAGCATTTGAAACCACGACATTTCTCTAA  199

seq1  TCTCTAGTTACAGGATGAACTCTGGAGCTCTGTAAGCATTTTCCTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGTTACAGGATGAACTCTGGAGCTCTGTAAGCATTTTCCTTTTTA  249

seq1  GACAGTTCAGGCTCCAAGCCTAGGAAATGGTACCATTAACCCAATCTTTC  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATCAGGCTCCAAGCCTAGGAAATGGTACCATTAACCCAATCTTTC  299

seq1  ACAGTGTACCTAAAAACTAATATAAAGTAGACAATCCCTCTTAGATGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTACCTAAAAACTAATATAAAGTAGACAATCCCTCTTAGATGTGT  349

seq1  CCAAAGGCTTATCTTTTGGGTCATTCTAGATCTTGTTAGTTGATGACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGCTTATCTTTTGGGTCATTCTAGATCTTGTTAGTTGATGACTAA  399

seq1  TGTTAGTCATCTCAGTGTAGTTTCCCCAAATTCTTTCTTGAAGTTGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTCATCTCAGTGTAGTTTCCCCAAATTCTTTCTTGAAGTTGGCTT  449

seq1  TTAAAAGACAATATGATACTGTTGTGTTCAATACGGACCATATGTTGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGACAATATGATACTGTTGTGTTCAATACGGACCATATGTTGATC  499

seq1  AATGTTGACCATATGTTGACCATACAACCATACTATATGCACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGACCATATGTTGACCATACAACCATACTATATGCACACACACAC  549

seq1  ACATACATATGTGGTTATCTGAGACATTTTTGTTACAAGCTTTTATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATATGTGGTTATCTGAGACATTTTTGTTACAAGCTTTTATTTCT  599

seq1  AGCATATAAAAAACACATAAAATGAGAGTCAAAGTCATTTTAAAAAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATAAAAAACACATAAAATGAGAGTCAAAGTCATTTTAAAAAAGCT  649

seq1  ACCCACAATCAACTTGAAGAATAAAGCACCAGTGCTGAAGACCAAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAATCAACTTGAAGAATAAAGCACCAGTGCTGAAGACCAAAGAAA  699

seq1  ATACACAGAGCCTCAAAGAAACACAATGTTACTGTGTCAAAGAAAGAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGAGCCTCAAAGAAACACAATGTTACTGTGTCAAAGAAAGAACA  749

seq1  GAGAGCCTTCAGAAAGGTACAGTTAGCAAAACTAGCTAACTGTCTTAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCTTCAGAAAGGTACAGTTAGCAAAACTAGCTAACTGTCTTAGTC  799

seq1  AGGGTTTCTATTCCTGGACAAAACATCATGACCAAGAAGCAAGTTGGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTATTCCTGGACAAAACATCATGACCAAGAAGCAAGTTGGGGA  849

seq1  GGAAAGGGTTTATTCAGCTTACACTTCCACATTGCTGTTCATCACTAAGG  900
      |||||||||||| |||||| ||||||||||| |||||||||||||||| |
seq2  GGAAAGGGTTTAGTCAGCTCACACTTCCACACTGCTGTTCATCACTAATG  899

seq1  AAGTCAGGACTGGAACT-CAAGCAGGTCAGGAAGCAGAAGCTGATGCAGA  949
      |||||| ||||| |||| || ||| |||| ||||||||||||||||||||
seq2  AAGTCA-GACTGAAACTACAGGCATGTCATGAAGCAGAAGCTGATGCAGA  948

seq1  G  950
      |
seq2  G  949


seq1: chr9_9100429_9101385
seq2: B6Ng01-345N02.g_63_1023 (reverse)

seq1  CCAATCAATTTTCCAGGTTTGGGAAGCTTGTTAGTCTACTGATAGTGGAG  50
      |||||| | ||||||||||||  |||||   |||| ||||||||| ||||
seq2  CCAATC-ACTTTCCAGGTTTGCTAAGCTGTATAGTATACTGATAGAGGAG  49

seq1  A-AGCTGCT-CACA-TTAGGTGGCTGCTGGGGGAAGTTTTCCTA-AG-GG  95
      | |  |||| |||| |||||||| |||  |||  |  ||| ||| || ||
seq2  ACAAATGCTGCACATTTAGGTGGATGCATGGGTCACATTTACTACAGTGG  99

seq1  TGT-AGCCTCTGGATAGCAAGTT-TCAGTAGACCTTACATGAGGAATATA  143
      ||| ||||| |||||||||| || ||||||||| | |  | || || |||
seq2  TGTAAGCCTTTGGATAGCAAATTATCAGTAGACTTAATTTAAGAAAAATA  149

seq1  TGGGTAGCACAAATTGGACTCATTGGATCATGGAATAACTAACTAATTTT  193
      ||| ||||| |||||||  ||||||||||||||||||| ||| | |||| 
seq2  TGGTTAGCAAAAATTGGTGTCATTGGATCATGGAATAAATAA-TTATTTC  198

seq1  TCAAAAGTAAATACAAACTAGGGAAGAGTAGGGACAGCTGGTTCTGTGAT  243
      ||  ||| | |||||||||||||||||||||||||||  |||| || |||
seq2  TCGTAAGAATATACAAACTAGGGAAGAGTAGGGACAGTCGGTTATGCGAT  248

seq1  GAATTAGAGGGACAGAGTAAACACGATCAAAACTGATCATAAATATGCAT  293
      | ||||||||||||||||||||| |||| || ||||||||||||||||||
seq2  G-ATTAGAGGGACAGAGTAAACAGGATCTAATCTGATCATAAATATGCAT  297

seq1  GAAATTCTGAAAACTCAATAAAAGATCGTATTAAAAACCCTCTTTCCAGG  343
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  GAAATTCTGAAAACTCAATAAAAGATAGTATTAAAAACCATCTTTCCAGG  347

seq1  TTTCCATGACCACCCAGGCCCTGATTTTCTACACTGTTTTTGCTTGTTTG  393
      |||||||||||||||||||| ||||||| ||||||||||||||| |||||
seq2  TTTCCATGACCACCCAGGCCATGATTTTTTACACTGTTTTTGCTAGTTTG  397

seq1  TGTGTTTGAGACATGAACTTGATGTATAACAGACAAAGTTTTGATCACTC  443
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTGTTTGAGACATGAACTTGACGTATAACAGACAAAGTTTTGATCACTC  447

seq1  TCTCCTATATTCTGGTATCGCATGCTTCAGCCACCACACAGAGCATCCCT  493
      |||||||||||||||||| ||||| ||||||| |||||||||||||||||
seq2  TCTCCTATATTCTGGTATGGCATGTTTCAGCCCCCACACAGAGCATCCCT  497

seq1  CAGTGTTTTTGCAGTCTTAGAATTGCTTTTTGCAGTCTGTCCACCCTGGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTTTGCAGTCTTAGAATTGCTTTTTGCAGTCTGTCCACCCTGGA  547

seq1  GACTGAGGCAGAATTCTGACAGTTTTTTGAGAGCCCATCCTCAAAACACA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGGCAGAATTCTGACAGTTTTTTGAGAGCCCATCCTCAAAACACA  597

seq1  AACAGAAAATATTTCACATTTCTCCTGAATCTCAAAGTTGCTCTGAGTCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAATATTTCACATTTCTCCTGAATCTCAAAGTTGCTCTGAGTCA  647

seq1  CTGTTGGTTCTCTGGGGGAGAACACCGACAGAGATTTTGGAAACATTTTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGTTCTCTGGGGGAGAACACCGACAGAGATTTTGGAAACATTTTG  697

seq1  AAATAGGAGCCATAAATTTCACTATGGAAAAGTCACACTGGAATGCATAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGAGCCATAAATTTCACTATGGAAAAGTCACACTGGAATGCATAA  747

seq1  ATTGGGAGGGAAGTGTACAGAGAGAGGACCTGACAAAACTCTGCAAAGTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAGGGAAGTGTACAGAGAGAGGACCTGACAAAACTCTGCAAAGTT  797

seq1  CTAGAGCTCAGCCTGGGTGATGTCATCGTTGGTGACGTCATCAGCAAGAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCTCAGCCTGGGTGATGTCATCGTTGGTGACGTCATCAGCAAGAT  847

seq1  TCCCCTCTGGCTCCCACCAAACATTTTTGTGCCAACTTGCTAGCTAACAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTGGCTCCCACCAAACATTTTTGTGCCAACTTGCTAGCTAACAG  897

seq1  TAAATGGATCATTTCAGCATTTTTTATTCATTAGTTTTATAGACTTGCTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGATCATTTCAGCATTTTTTATTCATTAGTTTTATAGACTTGCTT  947

seq1  GTGAAGATGAATTC  957
      | ||||||||||||
seq2  GCGAAGATGAATTC  961


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