BAC Information

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BAC

Clone NameB6Ng01-346F19
Chromosome9 (Build37)
Map Location 86,938,861 - 86,939,972
singlet/doubletsinglet
Overlap geneCyb5r4
Upstream gene2610018I03Rik, Pgm3, Rwdd2, Mod1, Prss35, Snap91, C030002E08Rik
Downstream geneLOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706, Tbx18, LOC671731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346F19.bB6Ng01-346F19.g
ACCGA128281GA128282
length1,1911,113
definitionB6Ng01-346F19.b B6Ng01-346F19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtaccccatttttaatggggttatttgaatt
tctggagttcagcttcttgagctctttgtatatattggatattagtcccc
tatctgatttaggattggtaaatttttcccccaatatgttggtggccttt
ttgtcttattgacagtatcttttgccctacagaagttttgcaattttatg
aggtcccatttgtcaattcttgatcttaaagcacaggccattgctgttct
gttttggaatttttcccctgtgcccatatcttcaagggttttccccactt
tctcctctataaatttcagtgtctctgattttgtggagttctttgatcct
cttagacttaagcattgtacaaggagataagaatggatcaattcgcattc
ttctacatgttaaccaccagttgtgccagcaccatttgttgaaaatgctt
ttgttccactggatggttttagctcccttgtcaaagatcaggttaccata
ggtgtctgggttcatttctgggtcttcaattctattccattgatctacct
gtctgtcgctgtaccagtaccaggcagtttttatcacacttgctctgtag
taaagctttaggtcaagcatggtgattccctcagaggttcttttatcctt
gagaagagtttttgctaccctaggcttttttgttattccagatgaatttg
caaattgccctttctaactcagtaaagaattgagttggaattttgatggg
gattgcattgaatctgtagattgctttcggcaggatagccatttttacta
tattaatcctgccaatccatgagcatgggagatctttccattttctgaga
tcttctttaatttctttcttcagagacttgaagttcttgtcatacatatc
tttcacttccttagttagagtcacaccaaggtattttatattatttgtga
ctattgtgaaggtgttgtttccctaatttctttctccgcctgtttatcct
ttgtgtagagaagccactgattttgtttgagttaatttatattcaagcta
ctgcattgaagcctgttatcaggttaaggagtcttctgggtggagttttg
atggttcatttaatgatatcgaatcatctgcaataatgaatatttggact
catcctccctgcaaattggtatcccctgtaatacctttggt
gaattctccctgctattctagaggacccaagtttagttactaacacccag
gttggacggctcacaatcacttgtaagtccaactttaggggatttgatgc
cgtcttctggcctctgtgggaacccacacacatacaaagagacatacaca
cataagtgaaacaaaaaccaaatctcttagaaaactctaatgaagagaag
aactaagcattctatagggaaggcagattccaagaaaaaaagcttaggac
acaaaaccttcctgacaccgtgaccctttaatatagttcctcatgttgtg
gtgaccctcaacaacaaaattattttcactgctgtctcacttttgctact
gttatgaatcataatgtaaatatctgatatacaaaccctgtgggggtcat
gacacatagactgagaacaactgctttagaggtttgatgttcatcatcta
ttgaatgacactggggtcaggggtcgggagttggtaaagaaaaaaaaaag
taaattctgactgaatttagaattaaaggaacttctcttcattaataaat
aacaaagtagtgagcagagttctgagagttgagaacttcaacctgttttt
tgttcaatcaactgccacgtttaaagcattgttgtgggagctgggagttg
gtaagatggctcaatgggtaaaggtgctttgttaactgtatcttttattc
ttctgtagaaattcttgtttctgaggcttactgcttcattctgttaacct
aggcctagtcctggaagcttctagcctctgtacaatcttatctagggcta
gaatgtttttagcctgagacttgctttctgggactctggctggctggtca
actcagctattctggctcaaaatatctttccatgctgactgattcaatct
ggtttctctcagcttctcctgaattgcactgctcggcctcacactaactc
tggcaatctgttctaatttttctgctccttttcattctctgctcattgcc
atcaccttgtctagcttgtctcttctctcttcacctgtcttctgtaacac
tcctcagtgaacggccttcaccccctgcactgctccctcttaatagcttt
catctcaacaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_86938861_86939972
seq2: B6Ng01-346F19.g_69_1181 (reverse)

seq1  TCTTG-TGAGATGAAAGCTA-TAAGAGGGAGCAGTGCAGGGGGTG-AGGC  47
      ||||| |||||||||||||| |||||||||||||||||||||||| ||||
seq2  TCTTGTTGAGATGAAAGCTATTAAGAGGGAGCAGTGCAGGGGGTGAAGGC  50

seq1  CGTTTCACTGGAGAGTGTTACAG-AGACAGGTTGAAGAGAGAGAGA-ACA  95
      || |||||||  ||||||||||| ||||||| |||||||||| ||| |||
seq2  CG-TTCACTGAGGAGTGTTACAGAAGACAGG-TGAAGAGAGA-AGAGACA  97

seq1  AGCTAGACAAGGTGATGGCAATGAGCCAGAGAATGAAAAGGAGCAAGAAA  145
      ||||||||||||||||||||||||| |||||||||||||||||||  |||
seq2  AGCTAGACAAGGTGATGGCAATGAG-CAGAGAATGAAAAGGAGCAGAAAA  146

seq1  ATTAGAACAGATTGCCAGAGTTAGTGTGAGGCCGAGCAGTGCAATTCAGG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAACAGATTGCCAGAGTTAGTGTGAGGCCGAGCAGTGCAATTCAGG  196

seq1  AGAAGCTGAGAGAAACCAGATTGAATCAGTCAGCATGGAAAGATATTTTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGAGAGAAACCAGATTGAATCAGTCAGCATGGAAAGATATTTTG  246

seq1  AGCCAGAATAGCTGAGTTGACCAGCCAGCCAGAGTCCCAGAAAGCAAGTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAATAGCTGAGTTGACCAGCCAGCCAGAGTCCCAGAAAGCAAGTC  296

seq1  TCAGGCTAAAAACATTCTAGCCCTAGATAAGATTGTACAGAGGCTAGAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTAAAAACATTCTAGCCCTAGATAAGATTGTACAGAGGCTAGAAG  346

seq1  CTTCCAGGACTAGGCCTAGGTTAACAGAATGAAGCAGTAAGCCTCAGAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGACTAGGCCTAGGTTAACAGAATGAAGCAGTAAGCCTCAGAAA  396

seq1  CAAGAATTTCTACAGAAGAATAAAAGATACAGTTAACAAAGCACCTTTAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTTCTACAGAAGAATAAAAGATACAGTTAACAAAGCACCTTTAC  446

seq1  CCATTGAGCCATCTTACCAACTCCCAGCTCCCACAACAATGCTTTAAACG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGAGCCATCTTACCAACTCCCAGCTCCCACAACAATGCTTTAAACG  496

seq1  TGGCAGTTGATTGAACAAAAAACAGGTTGAAGTTCTCAACTCTCAGAACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTTGATTGAACAAAAAACAGGTTGAAGTTCTCAACTCTCAGAACT  546

seq1  CTGCTCACTACTTTGTTATTTATTAATGAAGAGAAGTTCCTTTAATTCTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCACTACTTTGTTATTTATTAATGAAGAGAAGTTCCTTTAATTCTA  596

seq1  AATTCAGTCAGAATTTACTTTTTTTTTTCTTTACCAACTCCCGACCCCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTCAGAATTTACTTTTTTTTTTCTTTACCAACTCCCGACCCCTG  646

seq1  ACCCCAGTGTCATTCAATAGATGATGAACATCAAACCTCTAAAGCAGTTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGTGTCATTCAATAGATGATGAACATCAAACCTCTAAAGCAGTTG  696

seq1  TTCTCAGTCTATGTGTCATGACCCCCACAGGGTTTGTATATCAGATATTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTCTATGTGTCATGACCCCCACAGGGTTTGTATATCAGATATTT  746

seq1  ACATTATGATTCATAACAGTAGCAAAAGTGAGACAGCAGTGAAAATAATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATGATTCATAACAGTAGCAAAAGTGAGACAGCAGTGAAAATAATT  796

seq1  TTGTTGTTGAGGGTCACCACAACATGAGGAACTATATTAAAGGGTCACGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGAGGGTCACCACAACATGAGGAACTATATTAAAGGGTCACGG  846

seq1  TGTCAGGAAGGTTTTGTGTCCTAAGCTTTTTTTCTTGGAATCTGCCTTCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGAAGGTTTTGTGTCCTAAGCTTTTTTTCTTGGAATCTGCCTTCC  896

seq1  CTATAGAATGCTTAGTTCTTCTCTTCATTAGAGTTTTCTAAGAGATTTGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAATGCTTAGTTCTTCTCTTCATTAGAGTTTTCTAAGAGATTTGG  946

seq1  TTTTTGTTTCACTTATGTGTGTATGTCTCTTTGTATGTGTGTGGGTTCCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTCACTTATGTGTGTATGTCTCTTTGTATGTGTGTGGGTTCCC  996

seq1  ACAGAGGCCAGAAGACGGCATCAAATCCCCTAAAGTTGGACTTACAAGTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCCAGAAGACGGCATCAAATCCCCTAAAGTTGGACTTACAAGTG  1046

seq1  ATTGTGAGCCGTCCAACCTGGGTGTTAGTAACTAAACTTGGGTCCTCTAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAGCCGTCCAACCTGGGTGTTAGTAACTAAACTTGGGTCCTCTAG  1096

seq1  AATAGCAGGGAGAATTC  1112
      |||||||||||||||||
seq2  AATAGCAGGGAGAATTC  1113