BAC Information

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BAC

Clone NameB6Ng01-346L08
Chromosome9 (Build37)
Map Location 92,238,657 - 92,357,114
singlet/doubletdoublet
Overlap gene1700057G04Rik, Plscr4
Upstream geneZic1, Zic4, LOC331000, Plscr1, Plscr2, LOC666850
Downstream genePlod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346L08.bB6Ng01-346L08.g
ACCGA128530GA128531
length1,039438
definitionB6Ng01-346L08.b B6Ng01-346L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,356,074 - 92,357,114)(92,238,657 - 92,239,100)
sequence
gaattcatatggaaagagcccttggaagtctgccagatatcaaacttgga
tgtatatatttttgtgtatatagcttcagctagcttcttggcatctgtga
tgtgaagcattgatttgtattatgggattcttcaggcccagagaaccagt
agtggagaggctgactgtgaagggtcactaaaagaccccaatagccacct
ctcatagttctgagccggaagaggtggtggtacaaaggctgacattaaaa
gagtaccagaagcaggcagtgtagatggggatttttcattgtcaagataa
gggggacggtaaaaaatgtcatgcagataaatccattagacctatatgca
aacatatatttgtaaaacttctttgcataaactcaaccctccaagaaaac
agagaagccacttttcaatgaatgaatgaacctattacaaaacgaaaatc
aaaactggctgttgcatttagaacctaaactattgcttattttagtcata
ccatgaatccttccaaagaaaaactgtgcagtagactatttccttaagat
cttgtgggttgcaggcagactacattccaaaatacaggatgaattaaaac
ggaagcagagtgagcagcaaacccagagacaattaacatcatacctgtcc
gaattgtttaaaaagatgatttgctctttttattttagctatctaaaagg
aaatgtttttattatacagtgtacaaaaatattctggctacatttatata
gatcatcaccaagcctagtgcattatcaagaatgttgtcaagtcaggact
gtgccatcttctcgctagataaacagaaggcctgcgcctaactttagata
agcttgaaaagatatacttattaaaaagaatttttaaaacatccactgtc
tgaaagtggaaagtgaatatgtactcaagcagttaagcagttacataaaa
agaattatataccccatctgtctattgtactttttgaatcacagctatgt
atactctgtgtagtttttgtgtatgtaatattgtgtgtg

ctcagaatctatttacttagaagtatcccaagtgttgagattattacttg
atccacaaaaaatggatatgtgttctaaaattaatcactctgattcttgt
gtatttgttttagtttcaaagtaaagtttgaatgtcttaggaaattgtat
tttctattaccatggaagtaatttatgataatggtcaaacaatggtatat
atttagcacaagtttctaagatttgttataagcacaatatataatatatt
ctcattaatttattattgaataataacaaaattccacaaatatttctggc
cacattattaatccacctaccttctcttgacccgttcgtacccccacaag
aatttcctaccatctaagatatcatcccattttcctttctttgagtgtgt
gcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92356074_92357114
seq2: B6Ng01-346L08.b_45_1083 (reverse)

seq1  CACACACAATATTACATACACAAAAACTACACAGAAGTATACATAGCTGT  50
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CACACACAATATTACATACACAAAAACTACACAG-AGTATACATAGCTGT  49

seq1  GATTCAAAAAGTACAATAGACAGATGGGGTTATATAATTCTTTTTATGTA  100
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GATTCAAAAAGTACAATAGACAGATGGGG-TATATAATTCTTTTTATGTA  98

seq1  ACTGCTTAACTGCTTGAGTACATATTCACTTTCCACTTTCAGACAGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTAACTGCTTGAGTACATATTCACTTTCCACTTTCAGACAGTGGA  148

seq1  TGTTTTAAAAATTCTTTTTAATAAGTATATCTTTTCAAGCTTATCTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAAAATTCTTTTTAATAAGTATATCTTTTCAAGCTTATCTAAAG  198

seq1  TTAGGCGCAGGCCTTCTGTTTATCTAGCGAGAAGATGGCACAGTCCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCGCAGGCCTTCTGTTTATCTAGCGAGAAGATGGCACAGTCCTGAC  248

seq1  TTGACAACATTCTTGATAATGCACTAGGCTTGGTGATGATCTATATAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAACATTCTTGATAATGCACTAGGCTTGGTGATGATCTATATAAAT  298

seq1  GTAGCCAGAATATTTTTGTACACTGTATAATAAAAACATTTCCTTTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAGAATATTTTTGTACACTGTATAATAAAAACATTTCCTTTTAGA  348

seq1  TAGCTAAAATAAAAAGAGCAAATCATCTTTTTAAACAATTCGGACAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAAAATAAAAAGAGCAAATCATCTTTTTAAACAATTCGGACAGGTA  398

seq1  TGATGTTAATTGTCTCTGGGTTTGCTGCTCACTCTGCTTCCGTTTTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTAATTGTCTCTGGGTTTGCTGCTCACTCTGCTTCCGTTTTAATT  448

seq1  CATCCTGTATTTTGGAATGTAGTCTGCCTGCAACCCACAAGATCTTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGTATTTTGGAATGTAGTCTGCCTGCAACCCACAAGATCTTAAGG  498

seq1  AAATAGTCTACTGCACAGTTTTTCTTTGGAAGGATTCATGGTATGACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTCTACTGCACAGTTTTTCTTTGGAAGGATTCATGGTATGACTAA  548

seq1  AATAAGCAATAGTTTAGGTTCTAAATGCAACAGCCAGTTTTGATTTTCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCAATAGTTTAGGTTCTAAATGCAACAGCCAGTTTTGATTTTCGT  598

seq1  TTTGTAATAGGTTCATTCATTCATTGAAAAGTGGCTTCTCTGTTTTCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATAGGTTCATTCATTCATTGAAAAGTGGCTTCTCTGTTTTCTTG  648

seq1  GAGGGTTGAGTTTATGCAAAGAAGTTTTACAAATATATGTTTGCATATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTGAGTTTATGCAAAGAAGTTTTACAAATATATGTTTGCATATAG  698

seq1  GTCTAATGGATTTATCTGCATGACATTTTTTACCGTCCCCCTTATCTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATGGATTTATCTGCATGACATTTTTTACCGTCCCCCTTATCTTGA  748

seq1  CAATGAAAAATCCCCATCTACACTGCCTGCTTCTGGTACTCTTTTAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAAATCCCCATCTACACTGCCTGCTTCTGGTACTCTTTTAATGT  798

seq1  CAGCCTTTGTACCACCACCTCTTCCGGCTCAGAACTATGAGAGGTGGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTTGTACCACCACCTCTTCCGGCTCAGAACTATGAGAGGTGGCTA  848

seq1  TTGGGGTCTTTTAGTGACCCTTCACAGTCAGCCTCTCCACTACTGGTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTCTTTTAGTGACCCTTCACAGTCAGCCTCTCCACTACTGGTTCT  898

seq1  CTGGGCCTGAAGAATCCCATAATACAAATCAATGCTTCACATCACAGATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTGAAGAATCCCATAATACAAATCAATGCTTCACATCACAGATG  948

seq1  CCAAGAAGCTAGCTGAAGCTATATACACAAAAATATATACATCCAAGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGCTAGCTGAAGCTATATACACAAAAATATATACATCCAAGTTT  998

seq1  GATATCTGGCAGACTTCCAAGGGCTCTTTCCATATGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTGGCAGACTTCCAAGGGCTCTTTCCATATGAATTC  1039


seq1: chr9_92238657_92239100
seq2: B6Ng01-346L08.g_70_513

seq1  GAATTCCTCAGAATCTATTTACTTAGAAGTATCCCAAGTGTTGAGATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGAATCTATTTACTTAGAAGTATCCCAAGTGTTGAGATTAT  50

seq1  TACTTGATCCACAAAAAATGGATATGTGTTCTAAAATTAATCACTCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGATCCACAAAAAATGGATATGTGTTCTAAAATTAATCACTCTGAT  100

seq1  TCTTGTGTATTTGTTTTAGTTTCAAAGTAAAGTTTGAATGTCTTAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTATTTGTTTTAGTTTCAAAGTAAAGTTTGAATGTCTTAGGAAA  150

seq1  TTGTATTTTCTATTACCATGGAAGTAATTTATGATAATGGTCAAACAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTTCTATTACCATGGAAGTAATTTATGATAATGGTCAAACAATG  200

seq1  GTATATATTTAGCACAAGTTTCTAAGATTTGTTATAAGCACAATATATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATTTAGCACAAGTTTCTAAGATTTGTTATAAGCACAATATATAA  250

seq1  TATATTCTCATTAATTTATTATTGAATAATAACAAAATTCCACAAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTCATTAATTTATTATTGAATAATAACAAAATTCCACAAATATT  300

seq1  TCTGGCCACATTATTAATCCACCTACCTTCTCTTGACCCGTTCGTACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCACATTATTAATCCACCTACCTTCTCTTGACCCGTTCGTACCCC  350

seq1  CACAAGAATTTCCTACCATCTAAGATATCATCCCATTTTCCTTTCTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAATTTCCTACCATCTAAGATATCATCCCATTTTCCTTTCTTTGA  400

seq1  GTGTGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  444
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  444


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