BAC Information

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BAC

Clone NameB6Ng01-346M20
Chromosome9 (Build37)
Map Location 107,438,392 - 107,554,416
singlet/doubletdoublet
Overlap geneTmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3
Upstream geneIqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2
Downstream geneGnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346M20.bB6Ng01-346M20.g
ACCGA128598GA128599
length1,1151,166
definitionB6Ng01-346M20.b B6Ng01-346M20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,553,292 - 107,554,416)(107,438,392 - 107,439,579)
sequence
gaattctccctagctcaggcctgactctcactcctgatcccccacaggcc
ctttgtttcgctgcggttggcttcctgctgatgaccatgagcctgagttt
catcatcattgactgggtctctgggaccagccagcatggaggaaaccatt
aggatgacctccatcttgtcctgtctattcatcctagcacctcctgccct
ctctctctccagcccctgctcccagccaggggctaagtaaggggagagag
accggggagaaagactctgtaaatactatggcctctggctccacccatat
cctctccgttggaaggtttttgttgaagagccaggaccaaggcccatgga
ccacccctgctgggctccagagctgcaggggcttcctgcactaggaacag
ggtggggctgtcatcgccttagatcccatgaaaccctccatcctcctcca
gcagctgtgcacactgaggcctagcggccacctcctgaggtcacacaggc
agtaggggcacacagagccagaaaacccaggcctgaagacatcccctagt
cctgctgagagaccacagtctaaacccaagggctcatccctgatctccag
ccccgtttccaacacttgggccccaaatcttgggtactcttgtcttcttc
cctctcctccataggggaccctatcccatcccatatttggggtcagcagg
ttctgctgaggatggggctggtatgcaccccaaaagatccctgctgtggg
ccttcacagttcaggggaggctgggactcccacacctcacgcctgggcca
tgacttacattccactgctgggagaaaggaggccaggcccagagtagcct
gcccttgggagtcaaagaccctagaagccaggctggcacaggaatgggga
ggcttgccttttataaatattatacacaagaccgattgtgttctatattc
ttagtctcacagttctggaaaatggggtaggattaataacattgtggggg
ggggcactggggttctctgtctgctggctgcacagagtgggaactgagca
agacctcaccccactccactcctgcctttcagaacaagtcggtgcggcct
gctcagaccagctct
gaattctctcagctcattccccactgaggctctatagctgagtgtagcct
ccttccttgaaggagttagcagctggcaggtgtgggaacacagccaggcc
atgctgcaggcctaagtttgggcactacagcttgagtttttggggagtgt
cctaaagaccactccatcttgaccttacttagtagaggaaatgggctggg
ggctgagtttttaaggacaaagctgtccttagagctgttcagatgggact
gggccagagcttgcccttgccccagtgagaagtcttgaattgtgacagtt
gactggtcattcagaaagcctctctccaggatcaagaaagtggatagaaa
gccgggcatggtggtgcatgcctttaatcccagcactcagcagaggcagg
tggatttctgagttcaaggccagcctggtctacagagtgagctccaggac
agccagggctatacagagaaaccctgtctcgagaaaaaaaaaaagtggat
agaaaaggaagagtggggactggcccagtcacatggggtgggtgacaact
cccagacaactgtcatgcaactgcatgccactctcggacccaaagggcta
caaggaggaaagaggattccacaaagtgactgctggcaaggacatctcca
agagtagtctgtggagtgacagggaagacctgctactgggctaggctgga
gcacattagtgttttcagtgcctgtatccctgctgcttttcctgtctatt
ttcttggcgtggtagaaattttagatcttagaacgccatagggtggcgtg
tctgcctgtagcagcaaagaggtaagccatcgggatccacggacacttca
ccttctgtgggcaagagtgctgaacacttggaaacttgtccttcactgag
gctgggtagcttggtgtgtagggtgtgtcttcctttaaagagtttacagc
tggtgtccaagggtgggaaagcactcaagcatgctgcagccctacagctt
tgagacttctcggtgttctaaagaaatttcacttatttcccaccttttct
caaataatgctgcagagtctaccctgttggacacagaccttgctctctga
cttcccacatgactgttcgctacagctctgctaggtctgttgctttggaa
aagcttcctagaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_107553292_107554416
seq2: B6Ng01-346M20.b_44_1158 (reverse)

seq1  AGAGCTGGGTCTGAGCACGCCGCCACCG-CTTGGTCTGAGAGGCAGGAGG  49
      |||||| |||||||||| |||| ||||| |||| ||||| |||||||| |
seq2  AGAGCT-GGTCTGAGCAGGCCG-CACCGACTTGTTCTGAAAGGCAGGA-G  47

seq1  TGGGGTGGGGGTGGAGGGTCTTGCTCAGTTCCCACTCTGGTGCAGGCAAG  99
      ||| || ||||||   |||||||||||||||||||||| ||||| || ||
seq2  TGGAGT-GGGGTG--AGGTCTTGCTCAGTTCCCACTCT-GTGCA-GCCAG  92

seq1  CAGACAGGAGAACCCCAGTG-CCCCCCCCACAATTGTTATTAATCCCTAC  148
      |||||| ||||||||||||| |||||||||||| |||||||||| |||||
seq2  CAGACA-GAGAACCCCAGTGCCCCCCCCCACAA-TGTTATTAAT-CCTAC  139

seq1  CCCATTTTCCAGAACTGTGGAGACTAAGAATATAGAACACAATCGGTCTT  198
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCATTTTCCAGAACTGT-GAGACTAAGAATATAGAACACAATCGGTCTT  188

seq1  GTGTATAATATTTATAAAAGGCAAGCCTCCCCATTCCTGTGCCAGCCTGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATAATATTTATAAAAGGCAAGCCTCCCCATTCCTGTGCCAGCCTGG  238

seq1  CTTCTAGGGTCTTTGACTCCCAAGGGCAGGCTACTCTGGGCCTGGCCTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGGGTCTTTGACTCCCAAGGGCAGGCTACTCTGGGCCTGGCCTCC  288

seq1  CTTCTCCCAGCAGTGGAATGTAAGTCATGGCCCAGGCGTGAGGTGTGGGA  348
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCAGCAGTGGAATGTAAGTCATGGCCCAGGCGTGAGGTGTGGGA  338

seq1  GTCCCAGCCTCCCCTGAACTGTGAAGGCCCACAGCAGGGATCTTTTGGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGCCTCCCCTGAACTGTGAAGGCCCACAGCAGGGATCTTTTGGGG  388

seq1  TGCATACCAGCCCCATCCTCAGCAGAACCTGCTGACCCCAAATATGGGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACCAGCCCCATCCTCAGCAGAACCTGCTGACCCCAAATATGGGAT  438

seq1  GGGATAGGGTCCCCTATGGAGGAGAGGGAAGAAGACAAGAGTACCCAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGGGTCCCCTATGGAGGAGAGGGAAGAAGACAAGAGTACCCAAGA  488

seq1  TTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGATGAGCCCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGATGAGCCCTT  538

seq1  GGGTTTAGACTGTGGTCTCTCAGCAGGACTAGGGGATGTCTTCAGGCCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAGACTGTGGTCTCTCAGCAGGACTAGGGGATGTCTTCAGGCCTG  588

seq1  GGTTTTCTGGCTCTGTGTGCCCCTACTGCCTGTGTGACCTCAGGAGGTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTGGCTCTGTGTGCCCCTACTGCCTGTGTGACCTCAGGAGGTGG  638

seq1  CCGCTAGGCCTCAGTGTGCACAGCTGCTGGAGGAGGATGGAGGGTTTCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTAGGCCTCAGTGTGCACAGCTGCTGGAGGAGGATGGAGGGTTTCAT  688

seq1  GGGATCTAAGGCGATGACAGCCCCACCCTGTTCCTAGTGCAGGAAGCCCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTAAGGCGATGACAGCCCCACCCTGTTCCTAGTGCAGGAAGCCCC  738

seq1  TGCAGCTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTC  788

seq1  TTCAACAAAAACCTTCCAACGGAGAGGATATGGGTGGAGCCAGAGGCCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAAAAACCTTCCAACGGAGAGGATATGGGTGGAGCCAGAGGCCAT  838

seq1  AGTATTTACAGAGTCTTTCTCCCCGGTCTCTCTCCCCTTACTTAGCCCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTACAGAGTCTTTCTCCCCGGTCTCTCTCCCCTTACTTAGCCCCT  888

seq1  GGCTGGGAGCAGGGGCTGGAGAGAGAGAGGGCAGGAGGTGCTAGGATGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGAGCAGGGGCTGGAGAGAGAGAGGGCAGGAGGTGCTAGGATGAA  938

seq1  TAGACAGGACAAGATGGAGGTCATCCTAATGGTTTCCTCCATGCTGGCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGGACAAGATGGAGGTCATCCTAATGGTTTCCTCCATGCTGGCTG  988

seq1  GTCCCAGAGACCCAGTCAATGATGATGAAACTCAGGCTCATGGTCATCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGAGACCCAGTCAATGATGATGAAACTCAGGCTCATGGTCATCAG  1038

seq1  CAGGAAGCCAACCGCAGCGAAACAAAGGGCCTGTGGGGGATCAGGAGTGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCCAACCGCAGCGAAACAAAGGGCCTGTGGGGGATCAGGAGTGA  1088

seq1  GAGTCAGGCCTGAGCTAGGGAGAATTC  1125
      |||||||||||||||||||||||||||
seq2  GAGTCAGGCCTGAGCTAGGGAGAATTC  1115

seq1: chr9_107438392_107439579
seq2: B6Ng01-346M20.g_69_1234

seq1  GAATTCTCTCAGCTCATTCCCCACTGAGGCTCTATAGCTGAGTGTAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAGCTCATTCCCCACTGAGGCTCTATAGCTGAGTGTAGCCT  50

seq1  CCTTCCTTGAAGGAGTTAGCAGCTGGCAGGTGTGGGAACACAGCCAGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTGAAGGAGTTAGCAGCTGGCAGGTGTGGGAACACAGCCAGGCC  100

seq1  ATGCTGCAGGCCTAAGTTTGGGCACTACAGCTTGAGTTTTTGGGGAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCAGGCCTAAGTTTGGGCACTACAGCTTGAGTTTTTGGGGAGTGT  150

seq1  CCTAAAGACCACTCCATCTTGACCTTACTTAGTAGAGGAAATGGGCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGACCACTCCATCTTGACCTTACTTAGTAGAGGAAATGGGCTGGG  200

seq1  GGCTGAGTTTTTAAGGACAAAGCTGTCCTTAGAGCTGTTCAGATGGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGTTTTTAAGGACAAAGCTGTCCTTAGAGCTGTTCAGATGGGACT  250

seq1  GGGCCAGAGCTTGCCCTTGCCCCAGTGAGAAGTCTTGAATTGTGACAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGAGCTTGCCCTTGCCCCAGTGAGAAGTCTTGAATTGTGACAGTT  300

seq1  GACTGGTCATTCAGAAAGCCTCTCTCCAGGATCAAGAAAGTGGATAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTCATTCAGAAAGCCTCTCTCCAGGATCAAGAAAGTGGATAGAAA  350

seq1  GCCGGGCATGGTGGTGCATGCCTTTAATCCCAGCACTCAGCAGAGGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGCATGGTGGTGCATGCCTTTAATCCCAGCACTCAGCAGAGGCAGG  400

seq1  TGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGCTCCAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGCTCCAGGAC  450

seq1  AGCCAGGGCTATACAGAGAAACCCTGTCTCGAGAAAAAAAAAAAGTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCTATACAGAGAAACCCTGTCTCGAGAAAAAAAAAAAGTGGAT  500

seq1  AGAAAAGGAAGAGTGGGGACTGGCCCAGTCACATGGGGTGGGTGACAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGAAGAGTGGGGACTGGCCCAGTCACATGGGGTGGGTGACAACT  550

seq1  CCCAGACAACTGTCATGCAACTGCATGCCACTCTCGGACCCAAAGGGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACAACTGTCATGCAACTGCATGCCACTCTCGGACCCAAAGGGCTA  600

seq1  CAAGGAGGAAAGAGGATTCCACAAAGTGACTGCTGGCAAGGACATCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGGAAAGAGGATTCCACAAAGTGACTGCTGGCAAGGACATCTCCA  650

seq1  AGAGTAGTCTGTGGAGTGACAGGGAAGACCTGCTACTGGGCTAGGCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGTCTGTGGAGTGACAGGGAAGACCTGCTACTGGGCTAGGCTGGA  700

seq1  GCACATTAGTGTTTTCAGTGCCTGTATCCCTGCTGCTTTTCCTGTCTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTAGTGTTTTCAGTGCCTGTATCCCTGCTGCTTTTCCTGTCTATT  750

seq1  TTCTTGGCGTGGTAGAAATTTTAGATCTTAGAACGCCATAGGGTGGCGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCGTGGTAGAAATTTTAGATCTTAGAACGCCATAGGGTGGCGTG  800

seq1  TCTGCCTGTAGCAGCAAAGAGGTAAGCCATCGGGATCCACGGACACTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGTAGCAGCAAAGAGGTAAGCCATCGGGATCCACGGACACTTCA  850

seq1  CCTTCTGTGGGCAAGAGTGCTGAACACTTGGAAACTTGTCCTTCACTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTGGGCAAGAGTGCTGAACACTTGGAAACTTGTCCTTCACTGAG  900

seq1  GCTGGGTAGCTTGGTGTGTAGGGTGTGTCTTCCTTAAAAGAGTTTACAGC  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCTGGGTAGCTTGGTGTGTAGGGTGTGTCTTCCTTTAAAGAGTTTACAGC  950

seq1  TGGTGTCCAAGGGGTGGGAAAGCACTCAAGGCATGCTGCAGGCCCTACAG  1000
      |||||||||| |||||||||||||||||| |||||||||| |||||||||
seq2  TGGTGTCCAA-GGGTGGGAAAGCACTCAA-GCATGCTGCA-GCCCTACAG  997

seq1  C-TTGAGACTTCTCGGGTGTCCTAAAGAAAATTTCCAAGGGTATTTTCCC  1049
      | |||||||||||| ||||| ||||||||| ||  |     |  ||||||
seq2  CTTTGAGACTTCTC-GGTGTTCTAAAGAAATTTCAC-----TTATTTCCC  1041

seq1  ACCTTTTCTCAAAATAATGCCTGCAGAAGTCTACCCTGTGGAAACAACAG  1099
      |||||||||| |||||||| |||||| |||||||||||| | |   ||||
seq2  ACCTTTTCTC-AAATAATG-CTGCAG-AGTCTACCCTGTTGGA--CACAG  1086

seq1  ACCCTGCTCTCTGGCCTTCCCACATGGCTGTTTCTGCTACAAAGGCTCTG  1149
      ||| |||||||| | ||||||||||| |||||   ||||||   ||||||
seq2  ACCTTGCTCTCT-GACTTCCCACATGACTGTT--CGCTACA---GCTCTG  1130

seq1  CTAAGGTCTGGGTGGCTTTGAGAAAAGCTT-CTAGAAAAA  1188
      || ||||||  || |||||| ||||||||| |||||||||
seq2  CT-AGGTCT--GTTGCTTTG-GAAAAGCTTCCTAGAAAAA  1166