BAC Information

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BAC

Clone NameB6Ng01-346O03
Chromosome9 (Build37)
Map Location 53,723,591 - 53,724,440
singlet/doubletsinglet
Overlap genenone
Upstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln
Downstream geneLOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346O03.bB6Ng01-346O03.g
ACCGA128656GA128657
length1,248852
definitionB6Ng01-346O03.b B6Ng01-346O03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccctttatatccctcacagagcgacactggtcggctctatga
taacccttgccacacttagagcaaagagtgagagtccctccctgtttatc
tggagctctgcaatctttcttaaaatgcccaggctttccgcagttaaaac
atgtcctctgattatttctgcccatggagcggttttgggattgaaggatg
gcagccgctaaacctgcattgctgagaggtcccccaagctctcgacaaac
cctgagccagtcttgtaagcctttgttctttcttggggctatggccgctc
ggcactcctttgtggcttgctcatagatgagctgttctaccagaggcgcg
gcttgctctgactctccaaaaatacgctctgctgcctctgtcattctggc
cacaaaatctgagaaggattcctgaggtccctggattatctttgttaatt
gcccagtggcttcccctgctcgggagagcgccttccaggccctaatagcc
gtggaggaaatttgggcataagctccccaatggtagtttgtctgatcagc
agaataagctccctgacccgttaacaagtcaaaagtccaatctctctgct
ctggagtcaaagcagctgcgtttgttcgggcctgcgcttgtgcagcttcg
tgccaaagcgctctccattccatatatttgcccatactagggagagcggc
ttttacaatcgtttgccagtcagcaggagttagtgccatgccggcgagcc
tgtctaactgcaccaaggtaaaattagcattggttccgtatttacggacc
gactcggcaagttctttaatttgtaagtattctaccggagcgtggacacg
cccaccctcggctccttcaaagaccggaaatgcctgttgtattttccttt
gttcctctctgggaatgaatgagtctgcgcactgcctctctgcgcactgc
ctctctgcgcactgcctcttctgcgcactgcctctctgcgcattgcctct
ctgccattgcctctctgcgcattgcctctctgcgcattgctgacgcacta
tgcaggcggggcttccgcataagggcgacctttgaaaccgactgccctgg
aagttgaaccgtacgctggctttcgccaagcccgcttttggccttttttt
ctgacacattagactggatgtaatggccctgcttcttcatcccagtctgt
ttctctcagagaggagaaaatccttcactctggcttctcgagcactat
gaattccttaccatttggtattaagaaatcttagagttcctggccaatgc
acaaaaaaggttgttccagaaagtgtccgtgaaccacaaaagaccaccaa
ggaactggttccaatgcattcacactagggtctcttttcaagcttgagag
attggaccacaccatcatctctaacagtggaggacgcagccctgagccta
gtgtcaggcaagcatttgtagaggcaagaaactggtatctagcctggcac
acatctgattggggggaggggggcattatggcctttaacataattgacca
taatggcagtcaaaccctaaacttcacttctgctttcctcctgactggtg
gttgttaggaagtgaagtgtcaggggtaagcttgtaacatggaggtaaag
atttgctgggaaataacctggaaactggtgatagatgcaggttttgttgg
ggagtagcctggaaactggtgctaggtgccagctttttagttaactcaag
tttaaccttaggtcaggttccctgagatggagtctgaacccaaaatctgg
tctctcggtaagtagtagacatagaggatagaacaacccaacattattgg
agcccagatgtttcatcaaaattcaagatgccaaacatggagctgcagga
attagggttcaactcactacttttaactgcatctgggagtccagatcatt
gcatggtgctctctagtgaaatctctctggaaagattgtcaccatccctg
agcctcttgatatgtcttttaggtgattctcagcatcgagacaatgacat
taaactatcacaagtccaccctttatcaacctgacacccaaaacattcca
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_53723591_53724440
seq2: B6Ng01-346O03.g_67_918 (reverse)

seq1  AATGGAATG-TTTGGGTGTCAGGTTGATAAAGGGTGGACTTGTGATAG-T  48
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  AATGGAATGTTTTGGGTGTCAGGTTGATAAAGGGTGGACTTGTGATAGTT  50

seq1  TAATGTCATTGTCTCGACTGCTGAGAATCACCTAAAAGACATATCAAGGG  98
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  TAATGTCATTGTCTCGA-TGCTGAGAATCACCTAAAAGACATATCAAGAG  99

seq1  GCTCAGGGATGGTGACAATC-TTCCAGAGAGATTTCACTAGAGAGCACCA  147
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCTCAGGGATGGTGACAATCTTTCCAGAGAGATTTCACTAGAGAGCACCA  149

seq1  TGCAATGATCTGGACTCCCAGATGCAGTTAAAAGTAGTGAGTTGAACCCT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGATCTGGACTCCCAGATGCAGTTAAAAGTAGTGAGTTGAACCCT  199

seq1  AATTCCTGCAGCTCCATGTTTGGCATCTTGAATTTTGATGAAACATCTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGCAGCTCCATGTTTGGCATCTTGAATTTTGATGAAACATCTGG  249

seq1  GCTCCAATAATGTTGGGTTGTTCTATCCTCTATGTCTACTACTTACCGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAATAATGTTGGGTTGTTCTATCCTCTATGTCTACTACTTACCGAG  299

seq1  AGACCAGATTTTGGGTTCAGACTCCATCTCAGGGAACCTGACCTAAGGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGATTTTGGGTTCAGACTCCATCTCAGGGAACCTGACCTAAGGTT  349

seq1  AAACTTGAGTTAACTAAAAAGCTGGCACCTAGCACCAGTTTCCAGGCTAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGAGTTAACTAAAAAGCTGGCACCTAGCACCAGTTTCCAGGCTAC  399

seq1  TCCCCAACAAAACCTGCATCTATCACCAGTTTCCAGGTTATTTCCCAGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAACAAAACCTGCATCTATCACCAGTTTCCAGGTTATTTCCCAGCA  449

seq1  AATCTTTACCTCCATGTTACAAGCTTACCCCTGACACTTCACTTCCTAAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTACCTCCATGTTACAAGCTTACCCCTGACACTTCACTTCCTAAC  499

seq1  AACCACCAGTCAGGAGGAAAGCAGAAGTGAAGTTTAGGGTTTGACTGCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCAGTCAGGAGGAAAGCAGAAGTGAAGTTTAGGGTTTGACTGCCA  549

seq1  TTATGGTCAATTATGTTAAAGGCCATAATGCCCCCCTCCCCCCAATCAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTCAATTATGTTAAAGGCCATAATGCCCCCCTCCCCCCAATCAGA  599

seq1  TGTGTGCCAGGCTAGATACCAGTTTCTTGCCTCTACAAATGCTTGCCTGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCAGGCTAGATACCAGTTTCTTGCCTCTACAAATGCTTGCCTGA  649

seq1  CACTAGGCTCAGGGCTGCGTCCTCCACTGTTAGAGATGATGGTGTGGTCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGCTCAGGGCTGCGTCCTCCACTGTTAGAGATGATGGTGTGGTCC  699

seq1  AATCTCTCAAGCTTGAAAAGAGACCCTAGTGTGAATGCATTGGAACCAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCAAGCTTGAAAAGAGACCCTAGTGTGAATGCATTGGAACCAGT  749

seq1  TCCTTGGTGGTCTTTTGTGGTTCACGGACACTTTCTGGAACAACCTTTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGTGGTCTTTTGTGGTTCACGGACACTTTCTGGAACAACCTTTTT  799

seq1  TGTGCATTGGCCAGGAACTCTAAGATTTCTTAATACCAAATGGTAAGGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTGGCCAGGAACTCTAAGATTTCTTAATACCAAATGGTAAGGAA  849

seq1  TTC  850
      |||
seq2  TTC  852