BAC Information

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BAC

Clone NameB6Ng01-347H09
Chromosome9 (Build37)
Map Location 109,750,659 - 109,898,418
singlet/doubletdoublet
Overlap geneCamp, Cdc25a, LOC100043782, Mtap4, LOC100049540
Upstream geneCelsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6
Downstream geneDhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347H09.bB6Ng01-347H09.g
ACCGA129055GA129056
length637893
definitionB6Ng01-347H09.b B6Ng01-347H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,750,659 - 109,751,293)(109,897,532 - 109,898,418)
sequence
gaattcattatgtagataaggctacccatagggatcctcccacctctgcc
tcccaagtaagagccaaacttttgagaatcgctactttaagggatgacag
aaccagtcttaaagttcaggctcaagggaggagccaagggggttgggggg
gggggctcttctttctgctctaggtaggaataggaactaactggtccgca
ggataacccgtgttccatcccctcaccgtgccctgcatcctactcacctc
gttacagctgatgtcaaaagaatcagcggccgggttcagggtgactgccc
ccatacactgcttcaccaccttagaagggaaagcccatggtcaaactaga
attcatttgccataagccctaaaccctagtctactggatggaagtccctg
gggactccttgactagttccacaaaagggacccccacccccagccctctg
ccttaccccctgttccttgaaggcacattgctcaggtagctgccgctctg
ccttgccacatacagtctccttcactcggaacctcacagacttgggagta
tctggatcctcgtcctgttcaggagagtaagtttttttttttcgtctcag
gcccagtctcaactttcaaggatcggtttcttgacgc
gaattcaggccagactgatctacagagtcatttccaggacagccacagag
aaaagctgtcttggggaaaaggggtctgcagagctgggaatggtggtaca
tatctaatgtcatctctacatttgagttgctaaggaaggaaagctgagaa
ttcaaggtcagccccatctcagtaagatgacactactggaaagaaaaaag
taatcaggaatctagaaattaacaaagaaagacagcgttggggctgaaga
actgggtcacagtatactatactgctcttccagtagaccagagtttagtt
cccagcatccacacagtaggcagacaactgcctctaactccatttccaag
aaatccaatttttttctcacctctgtggatacctacattcatctatacaa
acgaaaacaaacaaaaaaccccacatatactcataattgaaaataaatct
taaaaagtaatatccttcagtgatctagaaatcatgacaatatgcagcca
tgaacataaaaagaaaaagaaaagaaaaagaaacatacaaagaaatcaca
ggctaaatgtggttagatgattagtgcttcagtgaatagcaaagttgcaa
agttttggtccttctccacattatccaacattaaatcctactatagtaca
gtcagcctcctgtcagctcccaaatcaaagtacacactggacaccatgtt
tggaaaaggaatctatctcaccagtgacactgatatccaggagtcacacc
tagggggattatccaaagactctctgtggtaaagctgtcacattaagcca
aaggcaggcttaggaatagctatctatatctatcacagcaactctcaaac
aggacttctaataaaaagccaaggaagcccggggcggtggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_109750659_109751293
seq2: B6Ng01-347H09.b_48_684

seq1  GAATTCATTATGTAGATAAGGCTACCCATAGGGATCCTCCCACCTCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGTAGATAAGGCTACCCATAGGGATCCTCCCACCTCTGCC  50

seq1  TCCCAAGTAAGAGCCAAACTTTTGAGAATCGCTACTTTAAGGGATGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTAAGAGCCAAACTTTTGAGAATCGCTACTTTAAGGGATGACAG  100

seq1  AACCAGTCTTAAAGTTCAGGCTCAAGGGAGGAGCCAAGGGGGTTGGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTCTTAAAGTTCAGGCTCAAGGGAGGAGCCAAGGGGGTTGGGGGG  150

seq1  GGGGGCTCTTCTTTCTGCTCTAGGTAGGAATAGGAACTAACTGGTCCGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTCTTCTTTCTGCTCTAGGTAGGAATAGGAACTAACTGGTCCGCA  200

seq1  GGATAACCCGTGTTCCATCCCCTCACCGTGCCCTGCATCCTACTCACCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACCCGTGTTCCATCCCCTCACCGTGCCCTGCATCCTACTCACCTC  250

seq1  GTTACAGCTGATGTCAAAAGAATCAGCGGCCGGGTTCAGGGTGACTGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGCTGATGTCAAAAGAATCAGCGGCCGGGTTCAGGGTGACTGCCC  300

seq1  CCATACACTGCTTCACCACCTTAGAAGGGAAAGCCCATGGTCAAACTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACACTGCTTCACCACCTTAGAAGGGAAAGCCCATGGTCAAACTAGA  350

seq1  ATTCATTTGCCATAAGCCCTAAACCCTAGTCTACTGGATGGAAGTCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTGCCATAAGCCCTAAACCCTAGTCTACTGGATGGAAGTCCCTG  400

seq1  GGGACTCCTTGACTAGTTCCACAAGAGGGACCCCCACCCCCAGCCCTCTG  450
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGGACTCCTTGACTAGTTCCACAAAAGGGACCCCCACCCCCAGCCCTCTG  450

seq1  CCTTACCCCCTGTTCCTTGAAGGCACATTGCTCAGGTAGCTGCCGCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCCCCTGTTCCTTGAAGGCACATTGCTCAGGTAGCTGCCGCTCTG  500

seq1  CCTTGCCACATACAGTCTCCTTCACTCGGAACCTCACAGACTTGGGAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCACATACAGTCTCCTTCACTCGGAACCTCACAGACTTGGGAGTA  550

seq1  TCTGGATCCTCGTCCTGGTCAGGAGAGAAAG-TAAGGAGACTCGTCTCAG  599
      ||||||||||||||||| ||||||||| ||| |        |||||||||
seq2  TCTGGATCCTCGTCCTGTTCAGGAGAGTAAGTTTTTTTTTTTCGTCTCAG  600

seq1  GCCCAGTCTCAAC-TTCAAGGATCGGTTTCTTGACGC  635
      ||||||||||||| |||||||||||||||||||||||
seq2  GCCCAGTCTCAACTTTCAAGGATCGGTTTCTTGACGC  637

seq1: chr9_109897532_109898418
seq2: B6Ng01-347H09.g_67_959 (reverse)

seq1  CCACCA-CGCCC--GGCTTCCTTGGCTTTTTATTAGAAGTCTTGTTTGAG  47
      |||||| |||||  ||||||||||||||||||||||||||| ||||||||
seq2  CCACCACCGCCCCGGGCTTCCTTGGCTTTTTATTAGAAGTCCTGTTTGAG  50

seq1  AGTTGCTGTGATAGATATAGATAGCTATTCCTAAGCCTGCCTTTGGCTTA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTGTGATAGATATAGATAGCTATTCCTAAGCCTGCCTTTGGCTTA  100

seq1  ATGTGACAGCTTTACCACAGAGAGTCTTTGGATAAT-CCCCTAGGTGTGA  146
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGTGACAGCTTTACCACAGAGAGTCTTTGGATAATCCCCCTAGGTGTGA  150

seq1  CTCCTGGATATCAGTGTCACTGGTGAGATAGATTCCTTTTCC-AACATGG  195
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTCCTGGATATCAGTGTCACTGGTGAGATAGATTCCTTTTCCAAACATGG  200

seq1  TGTCCAGTGTGTACTTTGATTTGGGAGCTGACAGGAGGCTGACTGTACTA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGTGTGTACTTTGATTTGGGAGCTGACAGGAGGCTGACTGTACTA  250

seq1  TAGTAGGATTTAATGTTGGATAATGTGGAGAAGGACC-AAACTTTGCAAC  294
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAGTAGGATTTAATGTTGGATAATGTGGAGAAGGACCAAAACTTTGCAAC  300

seq1  TTTGCTATTCACTGAAGCACTAATCATCTAACCACATTTAGCCTGTGATT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATTCACTGAAGCACTAATCATCTAACCACATTTAGCCTGTGATT  350

seq1  TCTTTGTATGTTTCTTTTTCTTTTCTTTTTCTTTTTATGTTCATGGCTGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTATGTTTCTTTTTCTTTTCTTTTTCTTTTTATGTTCATGGCTGC  400

seq1  ATATTGTCATGATTTCTAGATCACTGAAGGATATTACTTTTTAAGATTTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTCATGATTTCTAGATCACTGAAGGATATTACTTTTTAAGATTTA  450

seq1  TTTTCAATTATGAGTATATGTGGGGTTTTTTGTTTGTTTTCGTTTGTATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATTATGAGTATATGTGGGGTTTTTTGTTTGTTTTCGTTTGTATA  500

seq1  GATGAATGTAGGTATCCACAGAGGTGAGAAAAAAATTGGATTTCTTGGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGTAGGTATCCACAGAGGTGAGAAAAAAATTGGATTTCTTGGAA  550

seq1  ATGGAGTTAGAGGCAGTTGTCTGCCTACTGTGTGGATGCTGGGAACTAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTTAGAGGCAGTTGTCTGCCTACTGTGTGGATGCTGGGAACTAAA  600

seq1  CTCTGGTCTACTGGAAGAGCAGTATAGTATACTGTGACCCAGTTCTTCAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCTACTGGAAGAGCAGTATAGTATACTGTGACCCAGTTCTTCAG  650

seq1  CCCCAACGCTGTCTTTCTTTGTTAATTTCTAGATTCCTGATTACTTTTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACGCTGTCTTTCTTTGTTAATTTCTAGATTCCTGATTACTTTTTT  700

seq1  CTTTCCAGTAGTGTCATCTTACTGAGATGGGGCTGACCTTGAATTCTCAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGTAGTGTCATCTTACTGAGATGGGGCTGACCTTGAATTCTCAG  750

seq1  CTTTCCTTCCTTAGCAACTCAAATGTAGAGATGACATTAGATATGTACCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTCCTTAGCAACTCAAATGTAGAGATGACATTAGATATGTACCA  800

seq1  CCATTCCCAGCTCTGCAGACCCCTTTTCCCCAAGACAGCTTTTCTCTGTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCCAGCTCTGCAGACCCCTTTTCCCCAAGACAGCTTTTCTCTGTG  850

seq1  GCTGTCCTGGAAATGACTCTGTAGATCAGTCTGGCCTGAATTC  887
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAAATGACTCTGTAGATCAGTCTGGCCTGAATTC  893