BAC Information

Click to search

BAC

Clone NameB6Ng01-347I24
Chromosome9 (Build37)
Map Location 51,091,980 - 51,222,507
singlet/doubletdoublet
Overlap gene1810046K07Rik
Upstream geneLOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684
Downstream geneLOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347I24.bB6Ng01-347I24.g
ACCGA129129GA129130
length1,1541,015
definitionB6Ng01-347I24.b B6Ng01-347I24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,221,345 - 51,222,507)(51,091,980 - 51,093,000)
sequence
gaattctataatggattgatgttactacaagacagtattggttatcacag
aacatattcaaggacttcagtccctacttggtcatgtactttcatgccct
gttgaccttctgccatgaagtgataaagtatgacattctctcatatttct
agatttaccagccaaataaacactgactatttattgactagctagtctca
ggtatcctcacacagcatcacaaaaatgtgtcaagttgtaatagtttgtc
tttctctctagagacatttttcttcatctttgatatcctaaaatacttaa
tattttcttcgtttgagctcacatttttttatgtcctattttgttgtcca
atagggaagctttgagaattcatgactatagttctgggaaatattttgtt
ttgctttgttttttagtgtgctcttaatcatgttttctttatgtccttct
tagaacttctattattacctatgatatcatatcaactacccatccatatt
cttgtatttactcttctccccaacacacacaattttaggagaaatactct
gaaatatttctgagagtcactgcccaagcttctcattctaacagtgttta
atttgtgctattatttttaatacctaagaggtttattgtaacttagtcct
tctgagcaggtttttctttaattctgagattattaaaagtctttcatttt
ctatttataactcaaggtctttcttcaaacaactgataatttgtgggtac
atgactgaaattaaatgcttctacgtaggctttctgaccactgggttcac
taccatgtggtatgatagggacagggttgtattttttgatggatcataaa
tgtggtctctatagaagttcattgttgaggactttgtgtcttccacatta
gaatctttaccagtctcatggctcagatataggtactgattgcaagcttc
atgagccttatccaggaagctgagaaaccctaggttagaacttccatttc
aggttacggacctctacctacttcctcttatgttagacaagtggctctat
ctcatctgaagaattgcagttcttctgattgatgaacctgtgattcaacc
tcttcaatgctaattcttcaatccttggcaagatagagggacatttgccc
tgga
gaattccatcaggcaaagctgtgaatatttcaccaaagctgggaaataaa
atggctgagtgagcacacttttgcattcgactttctaagcaatggacctt
ctggatccttccacttaagatatctgactagtgggacagttctgttattt
ttcttactgtagaagagttgaactcttgatatttctccttttggaacatg
gaactttttccctgttcttttttttgtaatctattgacaatgcattttgc
aaacctctatgtcttatctggtctgaagttgtcgttaaaagatatttatg
tatcacatatctaataaagcatgataccaatgtttgaaaataactctgga
aagatttattatcacttagtttggccctgggagattatagttcttgattt
attgtgtttgctttaatcgcaccagagatatcaagccccaaataactaat
ttgcatgtcatcttagaaacacgtcaaagtatatgtggttagtaaaagat
ataacagtattttttctgtactacttcagacgttcatcagtttttattct
taaagatattttaaagcacttaatcagccatcttaagaatgggcccacac
attttcaatattcatccatggtcaacttgttttagagggttgttatccac
agagtcaggggataaatggctgctcattttttatggtacttttaattcaa
tctaaggaaagtttactgagcacctgctggccccaagccaagtgagccat
tcatgacggccccacccccttgaatctttaaccagataatcactctttgt
ctagagcagtgggttctcaaccttaataattcaaccctttcatacagttc
ctcctgttgttcctaaccagaaattattttcctaactactttgtaactgt
atttttgctactattatgaatgacatgcagggtatctgataggtgacttg
aagggatcttgacccacggtgagatcattgatttagagtgtaggtatata
tatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_51221345_51222507
seq2: B6Ng01-347I24.b_50_1203 (reverse)

seq1  TCCAGAGCAAATGTCCCTCTATCCTCTGGCCAAAGATTTGAAGGATTTAG  50
      ||||| |||||||||||||||   ||| ||||| || ||||| || ||||
seq2  TCCAGGGCAAATGTCCCTCTA---TCTTGCCAAGGA-TTGAA-GAATTAG  45

seq1  CATTGAAGGAGGGTGAATCACAGGGTTCACCAAACCAGAAGAACTGC-AT  99
      ||||||| |||| ||||||||| |||||| | || |||||||||||| ||
seq2  CATTGAA-GAGGTTGAATCACA-GGTTCATC-AATCAGAAGAACTGCAAT  92

seq1  TCTTCAGATGAGATAGAGCCACTTGTCTAACAATAGGAGGAAGTAGGTAG  149
      ||||||||||||||||||||||||||||||| ||| ||||||||||||||
seq2  TCTTCAGATGAGATAGAGCCACTTGTCTAAC-ATAAGAGGAAGTAGGTAG  141

seq1  AGGTCCGTAACCTGAAATGGAAGTTCTAACCTAGGGTTTCTCAGCTTCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCGTAACCTGAAATGGAAGTTCTAACCTAGGGTTTCTCAGCTTCCT  191

seq1  GGATAAGGCTCATGGAGCTTGCAATCAGTACCTATATCTTGAGCCATGAG  249
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  GGATAAGGCTCATGAAGCTTGCAATCAGTACCTATATC-TGAGCCATGAG  240

seq1  ACTGGTAAAGATTCTAATGTGGAAGACACAAAGTCCTCAACAATGAACTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAAAGATTCTAATGTGGAAGACACAAAGTCCTCAACAATGAACTT  290

seq1  CTATAGAGACCACATTTATGATCCATCAAAAAATACAACCCTGTCCCTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAGACCACATTTATGATCCATCAAAAAATACAACCCTGTCCCTAT  340

seq1  CATACCACATGGTAGTGAACCCAGTGGTCAGAAAGCCTACGTAGAAGCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCACATGGTAGTGAACCCAGTGGTCAGAAAGCCTACGTAGAAGCAT  390

seq1  TTAATTTCAGTCATGTACCCACAAATTATCAGTTGTTTGAAGAAAGACCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCAGTCATGTACCCACAAATTATCAGTTGTTTGAAGAAAGACCT  440

seq1  TGAGTTATAAATAGAAAATGAAAGACTTTTAATAATCTCAGAATTAAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTATAAATAGAAAATGAAAGACTTTTAATAATCTCAGAATTAAAGA  490

seq1  AAAACCTGCTCAGAAGGACTAAGTTACAATAAACCTCTTAGGTATTAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGCTCAGAAGGACTAAGTTACAATAAACCTCTTAGGTATTAAAA  540

seq1  ATAATAGCACAAATTAAACACTGTTAGAATGAGAAGCTTGGGCAGTGACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGCACAAATTAAACACTGTTAGAATGAGAAGCTTGGGCAGTGACT  590

seq1  CTCAGAAATATTTCAGAGTATTTCTCCTAAAATTGTGTGTGTTGGGGAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATATTTCAGAGTATTTCTCCTAAAATTGTGTGTGTTGGGGAGA  640

seq1  AGAGTAAATACAAGAATATGGATGGGTAGTTGATATGATATCATAGGTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAATACAAGAATATGGATGGGTAGTTGATATGATATCATAGGTAA  690

seq1  TAATAGAAGTTCTAAGAAGGACATAAAGAAAACATGATTAAGAGCACACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAAGTTCTAAGAAGGACATAAAGAAAACATGATTAAGAGCACACT  740

seq1  AAAAAACAAAGCAAAACAAAATATTTCCCAGAACTATAGTCATGAATTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAGCAAAACAAAATATTTCCCAGAACTATAGTCATGAATTCT  790

seq1  CAAAGCTTCCCTATTGGACAACAAAATAGGACATAAAAAAATGTGAGCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTCCCTATTGGACAACAAAATAGGACATAAAAAAATGTGAGCTC  840

seq1  AAACGAAGAAAATATTAAGTATTTTAGGATATCAAAGATGAAGAAAAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAAGAAAATATTAAGTATTTTAGGATATCAAAGATGAAGAAAAATG  890

seq1  TCTCTAGAGAGAAAGACAAACTATTACAACTTGACACATTTTTGTGATGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGAGAGAAAGACAAACTATTACAACTTGACACATTTTTGTGATGC  940

seq1  TGTGTGAGGATACCTGAGACTAGCTAGTCAATAAATAGTCAGTGTTTATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGGATACCTGAGACTAGCTAGTCAATAAATAGTCAGTGTTTATT  990

seq1  TGGCTGGTAAATCTAGAAATATGAGAGAATGTCATACTTTATCACTTCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGTAAATCTAGAAATATGAGAGAATGTCATACTTTATCACTTCAT  1040

seq1  GGCAGAAGGTCAACAGGGCATGAAAGTACATGACCAAGTAGGGACTGAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGGTCAACAGGGCATGAAAGTACATGACCAAGTAGGGACTGAAG  1090

seq1  TCCTTGAATATGTTCTGTGATAACCAATACTGTCTTGTAGTAACATCAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAATATGTTCTGTGATAACCAATACTGTCTTGTAGTAACATCAAT  1140

seq1  CCATTATAGAATTC  1163
      ||||||||||||||
seq2  CCATTATAGAATTC  1154

seq1: chr9_51091980_51093000
seq2: B6Ng01-347I24.g_68_1082

seq1  GAATTCCATCAGGCAAAGCTGTGAATATTTCACCAAAGCTGGGAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAGGCAAAGCTGTGAATATTTCACCAAAGCTGGGAAATAAA  50

seq1  ATGGCTGAGTGAGCACACTTTTGCATTCGACTTTCTAAGCAATGGACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGAGTGAGCACACTTTTGCATTCGACTTTCTAAGCAATGGACCTT  100

seq1  CTGGATCCTTCCACTTAAGATATCTGACTAGTGGGACAGTTCTGTTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCCTTCCACTTAAGATATCTGACTAGTGGGACAGTTCTGTTATTT  150

seq1  TTCTTACTGTAGAAGAGTTGAACTCTTGATATTTCTCCTTTTGGAACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACTGTAGAAGAGTTGAACTCTTGATATTTCTCCTTTTGGAACATG  200

seq1  GAACTTTTTCCCTGTTCTTTTTTTTGTAATCTATTGACAATGCATTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTTTCCCTGTTCTTTTTTTTGTAATCTATTGACAATGCATTTTGC  250

seq1  AAACCTCTATGTCTTATCTGGTCTGAAGTTGTCGTTAAAAGATATTTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCTATGTCTTATCTGGTCTGAAGTTGTCGTTAAAAGATATTTATG  300

seq1  TATCACATATCTAATAAAGCATGATACCAATGTTTGAAAATAACTCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACATATCTAATAAAGCATGATACCAATGTTTGAAAATAACTCTGGA  350

seq1  AAGATTTATTATCACTTAGTTTGGCCCTGGGAGATTATAGTTCTTGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTATTATCACTTAGTTTGGCCCTGGGAGATTATAGTTCTTGATTT  400

seq1  ATTGTGTTTGCTTTAATCGCACCAGAGATATCAAGCCCCAAATAACTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTTTGCTTTAATCGCACCAGAGATATCAAGCCCCAAATAACTAAT  450

seq1  TTGCATGTCATCTTAGAAACACGTCAAAGTATATGTGGTTAGTAAAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGTCATCTTAGAAACACGTCAAAGTATATGTGGTTAGTAAAAGAT  500

seq1  ATAACAGTATTTTTTCTGTACTACTTCAGACGTTCATCAGTTTTTATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGTATTTTTTCTGTACTACTTCAGACGTTCATCAGTTTTTATTCT  550

seq1  TAAAGATATTTTAAAGCACTTAATCAGCCATCTTAAGAATGGGCCCACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATATTTTAAAGCACTTAATCAGCCATCTTAAGAATGGGCCCACAC  600

seq1  ATTTTCAATATTCATCCATGGTCAACTTGTTTTAGAGGGTTGTTATCCAC  650
      |||||||||||||||||||||||||||||||||||||||||         
seq2  ATTTTCAATATTCATCCATGGTCAACTTGTTTTAGAGGGTTNNNNNNNNN  650

seq1  AGAGTCAGGGGATAAATGGCTGCTCATTTTTTATGGTACTTTTAATTCAA  700
                     |||||||||||||||||||||||||||||||||||
seq2  NNNNNNNNNNNNNNNATGGCTGCTCATTTTTTATGGTACTTTTAATTCAA  700

seq1  TCTAAGGAAAGTTTACTGAGCACCTGCTGGCCCCAAGCCAAGTGAGCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGAAAGTTTACTGAGCACCTGCTGGCCCCAAGCCAAGTGAGCCAT  750

seq1  TCATGACGGCCCCACCCCCTTGAATCTTTAACCAGATAATCACTCTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACGGCCCCACCCCCTTGAATCTTTAACCAGATAATCACTCTTTGT  800

seq1  CTAGAGCAGT-GGTTCTCAACCTTAATAATTCAACCCTTTCATACAGTTC  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCAGTGGGTTCTCAACCTTAATAATTCAACCCTTTCATACAGTTC  850

seq1  CTCCTGTTGTTCCTAAACCAGAAAATTATTTTCCTAACTACTTTGTAACT  899
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  CTCCTGTTGTTCCT-AACCAG-AAATTATTTTCCTAACTACTTTGTAACT  898

seq1  GTATTTTTGCTACTATTATGAATGACATGCAGGGTATCTGATAGGTGACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTGCTACTATTATGAATGACATGCAGGGTATCTGATAGGTGACT  948

seq1  GAAGGGGATCTTGACCCACGGGTTGAGAACCATTGATTTTAGAGTGTAGG  999
        | |||||||||||||||||  |||| | |||||| |||||||||||||
seq2  TGAAGGGATCTTGACCCACGG--TGAG-ATCATTGA-TTTAGAGTGTAGG  994

seq1  TAATATATATATATATATATAT  1021
      | ||||||||||||||||||||
seq2  T-ATATATATATATATATATAT  1015