BAC Information

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BAC

Clone NameB6Ng01-347M11
Chromosome9 (Build37)
Map Location 79,769,421 - 79,857,580
singlet/doubletdoublet
Overlap geneFilip1, LOC666490
Upstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, LOC100041218
Downstream geneSenp6, LOC100041249, Myo6, Impg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347M11.bB6Ng01-347M11.g
ACCGA129278GA129279
length1,194660
definitionB6Ng01-347M11.b B6Ng01-347M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,856,388 - 79,857,580)(79,769,421 - 79,770,079)
sequence
gaattcagatattcatgcttccaaagcaactttgttttggaaacattagc
ttttgtatgttgtgtgtgtgtgtgtgtgtgtgccccaggctagccttgaa
cttgacatgtaggaggcacaggcctgtaatctctgctacaggaggctgac
ataagggaataaaaattattattttttaaatttgcaattaaaatacagtt
aattaaataatctctcccctttgttttccttccctaactttctcattccc
tctcaaatggatgaccttattttctttattattgttatatatgaatatgc
acatacatatataaatgcaaccggccaaatccatttagtgttgcttgcat
gtgtacgatttcaggctgaccactacatattgagtaagcaatcagggggc
gcatccctcagaagagataatcctctctttcttcacagtcatcacttcct
tgtaggtctttgagatttcctccttccattagcatgtctactggtattgg
cattgttgaggtagcatgtgtgtagtctaggagatacagtctcacagcag
aattcctggtcctctgcctcttacaatctttctgctgccctcttctacag
ccttaggtacaggagttctgttgtaggtgtatctgctggggctgggcact
cacaatcaataaatctatgcactttgaacagtgtggttttctgcagtggt
ttccattagatcttgactcaaaaaaagatttaaaaggctgggaacttatc
agtggtaaagtatttacctagaaaatatgtgagtgtgttcatcacccaat
tgaactggataggggaaccaatgatggaatggttttggtagtgatgaaga
actggacaagaacaactgagctgtgggtgacacacacgactcagagtctg
tggggacagtggggcagaaaagcaccccatgctgttagaataatagggaa
ttttgttcacttgatggacaaatggaaactgtgtacttttgggaaacagc
agttcccatgccccaaagccacagttcatttctgattttcaaatgacaga
agaacagagcccaatgcctcagtggaaagaaatttacaaatccactagat
ctggactttgctagctcttgttgctagagatcagaacctcatgttgccct
gtgcccatgtttgcttccacatgttattggaagcctagaccgat

gaattcagtaaatttgatgtggcactgctcctgagatgtaataaatcaga
aaaacatgcaaagacagaaagctgaagacctgggcaaaggggaaagcttt
gaaaaatgatgtttgttggtgatattgtttgttttctaaggctggtattg
agtcgaaaaccaatgtagcttttgcatcttagacaagtcctctgcagatg
cagctacattcctacccaggacagttttgagtgctcgtactcagctgatc
cctagggaatgaacaagcttcttccagctgaaacagagagactcaggtgc
ctgatgcctgaggaggaactacaaagagaaagtcaaaaccgaggacaggc
acagaaaagtcacaagctgtgacaggatcacagtatgttaaccagttgca
caccataagacaacactccgagtttgcatttccaggctgtctagggccct
gccatcctgtcatgtcaagaaaaaaaatagctttgttaggagccatggta
actaaatactgggggagggggtggaggaaggtcaaggaatgttctatagt
tacgcttcaagaaagtacaaaacacaggttatttttaaatttggctgcac
gccaacagttttaacgtctaaaattaataatgcacataaatagcagattc
tgttttctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_79856388_79857580
seq2: B6Ng01-347M11.b_48_1241 (reverse)

seq1  ATCGGTCTAGCCTTCTCAATAACACTGTG--AGCAACACTGGGCAACAGG  48
      |||||||||| |||| |||||||| ||||  |||||   ||||| |||||
seq2  ATCGGTCTAGGCTTC-CAATAACA-TGTGGAAGCAAACATGGGC-ACAGG  47

seq1  GCAACATGAGGTTCTGA-CTCTAAGCAACAAGAGCTAGCAAAGTCCAGAT  97
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  GCAACATGAGGTTCTGATCTCT-AGCAACAAGAGCTAGCAAAGTCCAGAT  96

seq1  CTAGT-GATTTGTAAATTTCTTTCCACTGA-GCATTGGGCTCTGTTCTTC  145
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  CTAGTGGATTTGTAAATTTCTTTCCACTGAGGCATTGGGCTCTGTTCTTC  146

seq1  TGTCATTTGAAAATCAGAAATGAACTGTGGCTTTGGGGGCATGGGAACTG  195
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTCATTTGAAAATCAGAAATGAACTGTGGCTTT-GGGGCATGGGAACTG  195

seq1  CTGTTT-CCAAAAGTACACAGTTTCCATTTGTCCATCAAGTGAACAAAAT  244
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCCAAAAGTACACAGTTTCCATTTGTCCATCAAGTGAACAAAAT  245

seq1  TCCCTATTATTCTAACAGCATGGGGTGCTTTTCTGCCCCACTGTCCCCAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATTATTCTAACAGCATGGGGTGCTTTTCTGCCCCACTGTCCCCAC  295

seq1  AGACTCTGAGTCGTGTGTGTCACCCACAGCTCAGTTGTTCTTGTCCAGTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGAGTCGTGTGTGTCACCCACAGCTCAGTTGTTCTTGTCCAGTT  345

seq1  CTTCATCACTACCAAAACCATTCCATCATTGGTTCCCCTATCCAGTTCAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCACTACCAAAACCATTCCATCATTGGTTCCCCTATCCAGTTCAA  395

seq1  TTGGGTAATGAACACACTCACATATTTTCTAGGTAAATACTTTACCACTG  444
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGATGAACACACTCACATATTTTCTAGGTAAATACTTTACCACTG  445

seq1  ATAAGTTCCCAGCCTTTTAAATCTTTTTTTGAGTCAAGATCTAATGGAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTCCCAGCCTTTTAAATCTTTTTTTGAGTCAAGATCTAATGGAAA  495

seq1  CCACTGCAGAAAACCACACTGTTCAAAGTGCATAGATTTATTGATTGTGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCAGAAAACCACACTGTTCAAAGTGCATAGATTTATTGATTGTGA  545

seq1  GTGCCCAGCCCCAGCAGATACACCTACAACAGAACTCCTGTACCTAAGGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCAGCCCCAGCAGATACACCTACAACAGAACTCCTGTACCTAAGGC  595

seq1  TGTAGAAGAGGGCAGCAGAAAGATTGTAAGAGGCAGAGGACCAGGAATTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGAGGGCAGCAGAAAGATTGTAAGAGGCAGAGGACCAGGAATTC  645

seq1  TGCTGTGAGACTGTATCTCCTAGACTACACACATGCTACCTCAACAATGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGAGACTGTATCTCCTAGACTACACACATGCTACCTCAACAATGC  695

seq1  CAATACCAGTAGACATGCTAATGGAAGGAGGAAATCTCAAAGACCTACAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCAGTAGACATGCTAATGGAAGGAGGAAATCTCAAAGACCTACAA  745

seq1  GGAAGTGATGACTGTGAAGAAAGAGAGGATTATCTCTTCTGAGGGATGCG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGATGACTGTGAAGAAAGAGAGGATTATCTCTTCTGAGGGATGCG  795

seq1  CCCCCTGATTGCTTACTCAATATGTAGTGGTCAGCCTGAAATCGTACACA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGATTGCTTACTCAATATGTAGTGGTCAGCCTGAAATCGTACACA  845

seq1  TGCAAGCAACACTAAATGGATTTGGCCGGTTGCATTTATATATGTATGTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCAACACTAAATGGATTTGGCCGGTTGCATTTATATATGTATGTG  895

seq1  CATATTCATATATAACAATAATAAAGAAAATAAGGTCATCCATTTGAGAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCATATATAACAATAATAAAGAAAATAAGGTCATCCATTTGAGAG  945

seq1  GGAATGAGAAAGTTAGGGAAGGAAAACAAAGGGGAGAGATTATTTAATTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAGAAAGTTAGGGAAGGAAAACAAAGGGGAGAGATTATTTAATTA  995

seq1  ACTGTATTTTAATTGCAAATTTAAAAAATAATAATTTTTATTCCCTTATG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTTTAATTGCAAATTTAAAAAATAATAATTTTTATTCCCTTATG  1045

seq1  TCAGCCTCCTGTAGCAGAGATTACAGGCCTGTGCCTCCTACATGTCAAGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCCTGTAGCAGAGATTACAGGCCTGTGCCTCCTACATGTCAAGT  1095

seq1  TCAAGGCTAGCCTGGGGCACACACACACACACACACACAACATACAAAAG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCTAGCCTGGGGCACACACACACACACACACACAACATACAAAAG  1145

seq1  CTAATGTTTCCAAAACAAAGTTGCTTTGGAAGCATGAATATCTGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTTTCCAAAACAAAGTTGCTTTGGAAGCATGAATATCTGAATTC  1194


seq1: chr9_79769421_79770079
seq2: B6Ng01-347M11.g_69_728

seq1  GAATTCAGTAAATTTGATGTGGCACTGCTCCTGAGATGTAATAAATCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAATTTGATGTGGCACTGCTCCTGAGATGTAATAAATCAGA  50

seq1  AAAACATGCAAAGACAGAAAGCTGAAGACCTGGGCAAAGGGGAAAGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGCAAAGACAGAAAGCTGAAGACCTGGGCAAAGGGGAAAGCTTT  100

seq1  GAAAAATGATGTTTGTTGGTGATATTGTTTGTTTTCTAAGGCTGGTATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGATGTTTGTTGGTGATATTGTTTGTTTTCTAAGGCTGGTATTG  150

seq1  AGTCGAAAACCAATGTAGCTTTTGCATCTTAGACAAGTCCTCTGCAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGAAAACCAATGTAGCTTTTGCATCTTAGACAAGTCCTCTGCAGATG  200

seq1  CAGCTACATTCCTACCCAGGACAGTTTTGAGTGCTCGTACTCAGCTGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACATTCCTACCCAGGACAGTTTTGAGTGCTCGTACTCAGCTGATC  250

seq1  CCTAGGGAATGAACAAGCTTCTTCCAGCTGAAACAGAGAGACTCAGGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGAATGAACAAGCTTCTTCCAGCTGAAACAGAGAGACTCAGGTGC  300

seq1  CTGATGCCTGAGGAGGAACTACAAAGAGAAAGTCAAAACCGAGGACAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCCTGAGGAGGAACTACAAAGAGAAAGTCAAAACCGAGGACAGGC  350

seq1  ACAGAAAAGTCACAAGCTGTGACAGGATCACAGTATGTTAACCAGTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAGTCACAAGCTGTGACAGGATCACAGTATGTTAACCAGTTGCA  400

seq1  CACCATAAGACAACACTCCGAGTTTGCATTTCCAGGCTGTCTAGGGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATAAGACAACACTCCGAGTTTGCATTTCCAGGCTGTCTAGGGCCCT  450

seq1  GCCATCCTGTCATGTCAAGAAAAAAAATAGCTTTGTTAGGAGCCATGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTGTCATGTCAAGAAAAAAAATAGCTTTGTTAGGAGCCATGGTA  500

seq1  ACTAAATACTGGGGGAGGGGGTGGAGGAAGGTCAAGGAATGTTCTATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATACTGGGGGAGGGGGTGGAGGAAGGTCAAGGAATGTTCTATAGT  550

seq1  TACGCATCAAGAAAGTACAAAACACAGGTTATTTTTAAATTTGGCTGCAC  600
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCTTCAAGAAAGTACAAAACACAGGTTATTTTTAAATTTGGCTGCAC  600

seq1  GCCAACAGTTTTAACGTCTAAAAATTAAGATGCACATAAATAGCAGAGTC  650
      ||||||||||||||||||||||| | |  |||||||||||||||||| ||
seq2  GCCAACAGTTTTAACGTCTAAAATTAATAATGCACATAAATAGCAGATTC  650

seq1  TG-TTTCTCA  659
      || |||||||
seq2  TGTTTTCTCA  660


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