BAC Information

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BAC

Clone NameB6Ng01-347P11
Chromosome9 (Build37)
Map Location 107,136,797 - 107,289,330
singlet/doubletdoublet
Overlap geneMapkapk3, Cish, Hemk1, 6430571L13Rik
Upstream geneAlas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet, Dock3
Downstream geneCacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347P11.bB6Ng01-347P11.g
ACCGA129408GA129409
length1,147977
definitionB6Ng01-347P11.b B6Ng01-347P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,136,797 - 107,137,937)(107,288,365 - 107,289,330)
sequence
gaattccaaatattggcatcccccgtgtcttgatctgatgggcttttgtg
agcaatatccacaacccacaaaacctttctcacttggaacttgtgggtca
ttctcaccctccaaggattgtctcaggaccactttctccaagaagactcc
ccagctgcccctccgtgaaagaaagtttttctctaccatcagggcctctc
ttccctccaccacttactcctccaccttactctaaaagatggagtgtgtc
tgcttggcacattgacagcaatgcattttattcttcagtggcaaggattt
catttagtttaccccacgcacagaggctaatattgcacctgacacctaat
gaaaatttcacatacactcttcagtgagcaccctccctaaacatctactg
aaaccataataaaattaggctgaaaaagagaaccagcaatcacaaagctc
acattaaacagaagaaatttacccattataagaagatcaattttaattga
gagacatcttactgaacagctttataaaagataaacatggtagaacagtt
taagaagcaagaaagtctgcaaacagttttggcccatcctgccacccttc
cttttggctttacctcattaagtgataaattgcaacttgatgactgagga
aggaatcagattttcagcaggaaaccccttaatactcgtggctattaaaa
gtagctataatgaaacatttcctaaataatgtataagaaatgcagaaaag
catcatattccctccgtcgatcaataatcctttcatcatgagcaaactcc
ttaatggcaaatccgtcatcacctttggcagatgagactgaccctctata
aagttctgtcagcttggactccacgccttgtcatttccttctgcctgaag
attcagacagcagcattaaaggagccagccagcctgatgactcagctcat
aaaacaatgtggtggccacaaagatgatgttttatccaggagcattctgg
aggctcctccctactgaagtcggcaagctgtgggtatgtggcaccacgat
gctcattctcccagagctgctgggtagcagtgaaagcagcactcatttct
tcccttccgggcaggtggatctcttatgctgcactttctcaacagaa
gaattctttggccagcttagaaatagcacaggttttgtttactgctctca
ttgcctagatagctagagccaaccatgcagcctcacctgaccaccagggg
gcaggaaggtgcactcctacttttagtttgagcaaagtgattaagtgaca
gggcatcaaatgacacccccccctttccttctaccctttacccccccccc
cagtcctggatacccactttctccagccactggtccatcaggatcctgag
gggtgaaatgagatgtccctaatcttcctgtgtgagcctttttctcactt
ctggctctcaaatgtaaactgcactcaggtagacagacaaggaggctcag
ggattcctagagcagaggtctctctggggacaggcttaggagagaatagc
acttgagcacacttgaacacctgtcctgttcccaaagggtctcccagaaa
tggaactggtgaaggtgcagcctcacctgggctcaggcagtacatttggc
ccagaatgtagccaaggtacctaccatgggagaggctgagacagaaacca
gctgggagagtgtatagagcgttcaagagggaagttcacggaccctgcag
tctgcaggcatttgtaacacaccttctgggataccttagtcacacactgc
tcctctggacctctaacttaggtaagggtccccctgaagtgtgagctata
gggagaaatccgaggatagagagtggggagaaagaaggaattgggttgca
gatctgagatagtagggctcagcctcgaggctccattgtcatagagcatg
gggaagtgaggtggtaaactgaataggaccaagaaaaagcatctcttagt
tcctcctggtatgaagggtgcctgcgcccgagagcggagagggtgtgttc
ctctctcacatcattcaatcaccgagcctcagaaagagtgggccatgatc
aaataaaacaaacaatttaccctgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_107136797_107137937
seq2: B6Ng01-347P11.b_51_1197

seq1  GAATTCCAAATATTGGCATCCCCCGTGTCTTGATCTGATGGGCTTTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATATTGGCATCCCCCGTGTCTTGATCTGATGGGCTTTTGTG  50

seq1  AGCAATATCCACAACCCACAAAACCTTTCTCACTTGGAACTTGTGGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATCCACAACCCACAAAACCTTTCTCACTTGGAACTTGTGGGTCA  100

seq1  TTCTCACCCTCCAAGGATTGTCTCAGGACCACTTTCTCCAAGAAGACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACCCTCCAAGGATTGTCTCAGGACCACTTTCTCCAAGAAGACTCC  150

seq1  CCAGCTGCCCCTCCGTGAAAGAAAGTTTTTCTCTACCATCAGGGCCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGCCCCTCCGTGAAAGAAAGTTTTTCTCTACCATCAGGGCCTCTC  200

seq1  TTCCCTCCACCACTTACTCCTCCACCTTACTCTAAAAGATGGAGTGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCACCACTTACTCCTCCACCTTACTCTAAAAGATGGAGTGTGTC  250

seq1  TGCTTGGCACATTGACAGCAATGCATTTTATTCTTCAGTGGCAAGGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGCACATTGACAGCAATGCATTTTATTCTTCAGTGGCAAGGATTT  300

seq1  CATTTAGTTTACCCCACGCACAGAGGCTAATATTGCACCTGACACCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGTTTACCCCACGCACAGAGGCTAATATTGCACCTGACACCTAAT  350

seq1  GAAAATTTCACATACACTCTTCAGTGAGCACCCTCCCTAAACATCTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTCACATACACTCTTCAGTGAGCACCCTCCCTAAACATCTACTG  400

seq1  AAACCATAATAAAATTAGGCTGAAAAAGAGAACCAGCAATCACAAAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATAATAAAATTAGGCTGAAAAAGAGAACCAGCAATCACAAAGCTC  450

seq1  ACATTAAACAGAAGAAATTTACCCATTATAAGAAGATCAATTTTAATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAACAGAAGAAATTTACCCATTATAAGAAGATCAATTTTAATTGA  500

seq1  GAGACATCTTACTGAACAGCTTTATAAAAGATAAACATGGTAGAACAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATCTTACTGAACAGCTTTATAAAAGATAAACATGGTAGAACAGTT  550

seq1  TAAGAAGCAAGAAAGTCTGCAAACAGTTTTGGCCCATCCTGCCACCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGCAAGAAAGTCTGCAAACAGTTTTGGCCCATCCTGCCACCCTTC  600

seq1  CTTTTGGCTTTACCTCATTAAGTGATAAATTGCAACTTGATGACTGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGCTTTACCTCATTAAGTGATAAATTGCAACTTGATGACTGAGGA  650

seq1  AGGAATCAGATTTTCAGCAGGAAACCCCTTAATACTCGTGGCTATTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCAGATTTTCAGCAGGAAACCCCTTAATACTCGTGGCTATTAAAA  700

seq1  GTAGCTATAATGAAACATTTCCTAAATAATGTATAAGAAATGCAGAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTATAATGAAACATTTCCTAAATAATGTATAAGAAATGCAGAAAAG  750

seq1  CATCATATTCCCTCCGTCGATCAATAATCCTTTCATCATGAGCAAACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATATTCCCTCCGTCGATCAATAATCCTTTCATCATGAGCAAACTCC  800

seq1  TTAATGGCAAATCCGTCATCACCTTTGGCAGATGAGACTGACCCTCTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGCAAATCCGTCATCACCTTTGGCAGATGAGACTGACCCTCTATA  850

seq1  AAGTTCTGTCAGCTTGGACTCCACGCCTTGTCATTTCCTTCTGCCTGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTGTCAGCTTGGACTCCACGCCTTGTCATTTCCTTCTGCCTGAAG  900

seq1  ATTCAGACAGCAGCATTTAAGGAGCCAGCCAGCCTGATGACTCAGCTCAT  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATTCAGACAGCAGCATTAAAGGAGCCAGCCAGCCTGATGACTCAGCTCAT  950

seq1  AAAACAATGT-GTGGCCACAAAGATGATG-TTTATCCAGGAGCATTCTGG  998
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  AAAACAATGTGGTGGCCACAAAGATGATGTTTTATCCAGGAGCATTCTGG  1000

seq1  AGGCT-CTCCCTACTGAAGTCGGCAAGCTGTGGGTATGTGGCA-CACGAT  1046
      ||||| ||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGGCTCCTCCCTACTGAAGTCGGCAAGCTGTGGGTATGTGGCACCACGAT  1050

seq1  GCTCATTCTCCCAAGAGCTGCT-GGTAGCAGTGAAAAGCAGCACTCATTT  1095
      |||||||||||| ||||||||| |||||||||| ||||||||||||||||
seq2  GCTCATTCTCCC-AGAGCTGCTGGGTAGCAGTG-AAAGCAGCACTCATTT  1098

seq1  CT--CCCTCCCGGCA-GTTGATCTCTTATGCTGCACTGTCTCAACAGAA  1141
      ||  || ||| |||| || |||||||||||||||||| |||||||||||
seq2  CTTCCCTTCCGGGCAGGTGGATCTCTTATGCTGCACTTTCTCAACAGAA  1147

seq1: chr9_107288365_107289330
seq2: B6Ng01-347P11.g_69_1044 (reverse)

seq1  GACAGGAT-AATTGTTTGTTTTA-TTGATCATGG-CCACTC-TTCTGTGG  46
      |||||| | |||||||||||||| |||||||||| |||||| ||||| ||
seq2  GACAGGGTAAATTGTTTGTTTTATTTGATCATGGCCCACTCTTTCTGAGG  50

seq1  CTCGGTGA-TGGATGATGTGAGAG-GGGACACACCCTCT-CGCTCTC-GG  92
      |||||||| || |||||||||||| || ||||||||||| ||||||| ||
seq2  CTCGGTGATTGAATGATGTGAGAGAGGAACACACCCTCTCCGCTCTCGGG  100

seq1  CGCAGGCACCCTTCATACCAGGA-GAACT-AGAGATGCTTTTTCTTGGTC  140
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  CGCAGGCACCCTTCATACCAGGAGGAACTAAGAGATGCTTTTTCTTGGTC  150

seq1  CTATTCAGTTTACCACCTCACTTCCCCCTGCTCTATGACAATGGAGCCTC  190
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTATTCAGTTTACCACCTCACTTCCCCATGCTCTATGACAATGGAGCCTC  200

seq1  GAGGCTGAGCCCTACTATCTCAGATCTGCAACCCAATTCCTTCTTTCTCC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGAGCCCTACTATCTCAGATCTGCAACCCAATTCCTTCTTTCTCC  250

seq1  CCACTCTCTATCCTCGGATTTCTCCCTATAGCTCACACTTCAGGGGGACC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTCTATCCTCGGATTTCTCCCTATAGCTCACACTTCAGGGGGACC  300

seq1  CTTACCTAAGTTAGAGGTCCAGAGGAGCAGTGTGTGACTAAGGTATCCCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTAAGTTAGAGGTCCAGAGGAGCAGTGTGTGACTAAGGTATCCCA  350

seq1  GAAGGTGTGTTACAAATGCCTGCAGACTGCAGGGTCCGTGAACTTCCCTC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGTGTTACAAATGCCTGCAGACTGCAGGGTCCGTGAACTTCCCTC  400

seq1  TTGAACGCTCTATACACTCTCCCAGCTGGTTTCTGTCTCAGCCTCTCCCA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACGCTCTATACACTCTCCCAGCTGGTTTCTGTCTCAGCCTCTCCCA  450

seq1  TGGTAGGTACCTTGGCTACATTCTGGGCCAAATGTACTGCCTGAGCCCAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGTACCTTGGCTACATTCTGGGCCAAATGTACTGCCTGAGCCCAG  500

seq1  GTGAGGCTGCACCTTCACCAGTTCCATTTCTGGGAGACCCTTTGGGAACA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCTGCACCTTCACCAGTTCCATTTCTGGGAGACCCTTTGGGAACA  550

seq1  GGACAGGTGTTCAAGTGTGCTCAAGTGCTATTCTCTCCTAAGCCTGTCCC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGTGTTCAAGTGTGCTCAAGTGCTATTCTCTCCTAAGCCTGTCCC  600

seq1  CAGAGAGACCTCTGCTCTAGGAATCCCTGAGCCTCCTTGTCTGTCTACCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGACCTCTGCTCTAGGAATCCCTGAGCCTCCTTGTCTGTCTACCT  650

seq1  GAGTGCAGTTTACATTTGAGAGCCAGAAGTGAGAAAAAGGCTCACACAGG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCAGTTTACATTTGAGAGCCAGAAGTGAGAAAAAGGCTCACACAGG  700

seq1  AAGATTAGGGACATCTCATTTCACCCCTCAGGATCCTGATGGACCAGTGG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAGGGACATCTCATTTCACCCCTCAGGATCCTGATGGACCAGTGG  750

seq1  CTGGAGAAAGTGGGTATCCAGGACTGGGGGGGGGGGTAAAGGGGAGAAGG  790
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGGAGAAAGTGGGTATCCAGGACTGGGGGGGGGGGTAAAGGGTAGAAGG  800

seq1  AAAGGGGGGGGTGTCATTTGATGCCCTGTCACTTAATCACTTTGCTCAAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGGGGGTGTCATTTGATGCCCTGTCACTTAATCACTTTGCTCAAA  850

seq1  CTAAAAGTAGGAGTGCACCTTCCTGCCCCCTGGTGGTCAGGTGAGGCTGC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGTAGGAGTGCACCTTCCTGCCCCCTGGTGGTCAGGTGAGGCTGC  900

seq1  ATGGTTGGCTCTAGCTATCTAGGCAATGAGAGCAGTAAACAAAACCTGTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGGCTCTAGCTATCTAGGCAATGAGAGCAGTAAACAAAACCTGTG  950

seq1  CTATTTCTAAGCTGGCCAAAGAATTC  966
      ||||||||||||||||||||||||||
seq2  CTATTTCTAAGCTGGCCAAAGAATTC  976