MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-348C13
Chromosome	9 (Build37)
Map Location	104,248,560 - 104,384,307
singlet/doublet	doublet
Overlap gene	LOC100040921
Upstream gene	Topbp1, Cdv3, Bfsp2, Tmem108, 4932413F04Rik, EG384978, Nphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16, Acpp
Downstream gene	Cpne4, Mrpl3, Nudt16, 1700080E11Rik, Nek11, Aste1, Atp2c1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Topbp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235559 MGI:1920018
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdv3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:321022 MGI:2448759
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Bfsp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107993 MGI:1333828
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem108 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:81907 MGI:1932411
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4932413F04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319215 MGI:2441690
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs

name	EG384978 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:384978 MGI:3645790
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Nphp3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74025 MGI:1921275
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ube1dc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66663 MGI:1913913
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acad11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102632 MGI:2143169
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccrl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:252837 MGI:2181676
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hmgb1-rs16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15296 MGI:104765
definition	gene_synonym : Hmg1-rs16 note : high mobility group box 1, related sequence 16 pseudo : _no_value

name	Acpp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56318 MGI:1928480
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100040921 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040921
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Cpne4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74020 MGI:1921270
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mrpl3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94062 MGI:2137204
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nudt16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75686 MGI:1922936
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700080E11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73532 MGI:1920782
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nek11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208583 MGI:2442276
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aste1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66595 MGI:1913845
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atp2c1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235574 MGI:1889008
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Topbp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130322 GeneID:235559 MGI:1920018
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : topoisomerase (DNA) II beta binding protein transcript_id : NM_176979.5

name	Cdv3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:28461293 GeneID:321022 MGI:2448759
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carnitine deficiency-associated gene expressed in ventricle 3 transcript_id : NM_175833.1

name	Cdv3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342196 GeneID:321022 MGI:2448759
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carnitine deficiency-associated gene expressed in ventricle 3 transcript_id : NM_175565.2

name	Bfsp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131084 GeneID:107993 MGI:1333828
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : beaded filament structural protein 2, phakinin transcript_id : NM_001002896.2

name	Tmem108 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381914 GeneID:81907 MGI:1932411
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 108 transcript_id : NM_178638.3

name	4932413F04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260309 GeneID:319215 MGI:2441690
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs product : RIKEN cDNA 4932413F04 gene transcript_id : XM_001004814.2

name	Nphp3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:50878276 GeneID:74025 MGI:1921275
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nephronophthisis 3 (adolescent) transcript_id : NM_028721.2

name	Ube1dc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803582 GeneID:66663 MGI:1913913
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin-activating enzyme E1-domain containing 1 transcript_id : NM_025692.2

name	Acad11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803267 GeneID:102632 MGI:2143169
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-Coenzyme A dehydrogenase family, member 11 transcript_id : NM_175324.3

name	Ccrl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21746186 GeneID:252837 MGI:2181676
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) receptor-like 1 transcript_id : NM_145700.1

name	Acpp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:92373432 GeneID:56318 MGI:1928480
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acid phosphatase, prostate transcript_id : NM_207668.2

name	Acpp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46575783 GeneID:56318 MGI:1928480
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acid phosphatase, prostate transcript_id : NM_019807.2

name	Cpne4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037332 GeneID:74020 MGI:1921270
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : copine IV transcript_id : NM_028719.1

name	Mrpl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131171 GeneID:94062 MGI:2137204
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial ribosomal protein L3 transcript_id : NM_053159.3

name	Nudt16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125656156 GeneID:75686 MGI:1922936
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nudix (nucleoside diphosphate linked moiety X)-type motif 16 transcript_id : NM_029385.2

name	1700080E11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802385 GeneID:73532 MGI:1920782
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700080E11 gene transcript_id : NM_028562.2

name	Nek11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363104 GeneID:208583 MGI:2442276
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NIMA (never in mitosis gene a)-related expressed kinase 11 transcript_id : NM_172461.2

name	Aste1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381893 GeneID:66595 MGI:1913845
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : asteroid homolog 1 (Drosophila) transcript_id : NM_025651.3

name	Atp2c1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33186871 GeneID:235574 MGI:1889008
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, Ca++-sequestering transcript_id : NM_175025.2

name	Topbp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559817 CCDS:CCDS23453.1 GeneID:235559 MGI:1920018
definition	GO_component : GO:0000794 - condensed nuclear chromosome [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0007131 - meiotic recombination [Evidence ISS]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 product : topoisomerase (DNA) II beta binding protein protein_id : NP_795953.2

name	Cdv3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28461294 CCDS:CCDS23454.1 GeneID:321022 MGI:2448759
definition	codon_start : 1 note : isoform CDV3B is encoded by transcript variant CDV3B product : carnitine deficiency-associated gene expressed in ventricle 3 isoform CDV3B protein_id : NP_787027.1

name	Cdv3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28202071 GeneID:321022 MGI:2448759
definition	codon_start : 1 note : isoform CDV3A is encoded by transcript variant CDV3A product : carnitine deficiency-associated gene expressed in ventricle 3 isoform CDV3A protein_id : NP_780774.1

name	Bfsp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50872159 GeneID:107993 MGI:1333828
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005882 - intermediate filament [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005212 - structural constituent of eye lens [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IMP]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA] codon_start : 1 product : beaded filament structural protein 2, phakinin protein_id : NP_001002896.1

name	Tmem108 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30519983 CCDS:CCDS23455.1 GeneID:81907 MGI:1932411
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : hypothetical protein LOC81907 protein_id : NP_848753.1

name	4932413F04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386548 GeneID:319215 MGI:2441690
definition	codon_start : 1 product : hypothetical protein LOC319215 protein_id : XP_001004814.1

name	Nphp3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50878277 GeneID:74025 MGI:1921275
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0006629 - lipid metabolism [Evidence IMP] codon_start : 1 exception : unclassified translation discrepancy note : polycystic kidney disease product : nephrocystin 3 protein_id : NP_082997.2

name	Ube1dc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313374 CCDS:CCDS23457.1 GeneID:66663 MGI:1913913
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ubiquitin-activating enzyme E1-domain containing 1 protein_id : NP_079968.1

name	Acad11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:74271799 CCDS:CCDS23458.1 GeneID:102632 MGI:2143169
definition	GO_function : GO:0003995 - acyl-CoA dehydrogenase activity [Evidence IEA]; GO:0050660 - FAD binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : acyl-Coenzyme A dehydrogenase family, member 11 protein_id : NP_780533.2

name	Ccrl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21746187 CCDS:CCDS23459.1 GeneID:252837 MGI:2181676
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016493 - C-C chemokine receptor activity [Evidence IEA]; GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : chemokine receptor CCX-CKR; chemokine receptor CCR11; chemokine (C-C) receptor-like 1 product : chemokine (C-C motif) receptor-like 1 protein_id : NP_663746.1

name	Acpp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46575782 CCDS:CCDS23460.1 GeneID:56318 MGI:1928480
definition	GO_function : GO:0003993 - acid phosphatase activity [Evidence ISS] [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; lysosomal acid phosphatase product : acid phosphatase, prostate isoform 1 protein_id : NP_997551.1

name	Acpp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46575784 GeneID:56318 MGI:1928480
definition	GO_function : GO:0003993 - acid phosphatase activity [Evidence ISS] [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; lysosomal acid phosphatase product : acid phosphatase, prostate isoform 2 protein_id : NP_062781.2

name	Cpne4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037333 CCDS:CCDS23461.1 GeneID:74020 MGI:1921270
definition	codon_start : 1 product : copine IV protein_id : NP_082995.1

name	Mrpl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981470 CCDS:CCDS23462.1 GeneID:94062 MGI:2137204
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence TAS] codon_start : 1 product : mitochondrial ribosomal protein L3 protein_id : NP_444389.2

name	Nudt16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125656157 GeneID:75686 MGI:1922936
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] codon_start : 1 product : nudix-type motif 16 protein_id : NP_083661.2

name	1700080E11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386322 CCDS:CCDS23463.1 GeneID:73532 MGI:1920782
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC73532 protein_id : NP_082838.1

name	Nek11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369621 CCDS:CCDS23464.1 GeneID:208583 MGI:2442276
definition	GO_component : GO:0005730 - nucleolus [Evidence ISS]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence ISS]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0031573 - intra-S DNA damage checkpoint [Evidence ISS]; GO:0006468 - protein amino acid phosphorylation [Evidence ISS]; GO:0007243 - protein kinase cascade [Evidence ISS] codon_start : 1 exception : mismatches in translation note : NIMA (never in mitosis gene a)- related kinase 11 product : NIMA (never in mitosis gene a)-related expressed kinase 11 protein_id : NP_766049.1

name	Aste1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560235 CCDS:CCDS23465.1 GeneID:66595 MGI:1913845
definition	codon_start : 1 product : asteroid homolog 1 protein_id : NP_079927.2

name	Atp2c1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33186872 GeneID:235574 MGI:1889008
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence TAS] [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005388 - calcium-transporting ATPase activity [Evidence TAS] [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006816 - calcium ion transport [Evidence IEA]; GO:0006812 - cation transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA]; GO:0015992 - proton transport [Evidence IEA]; GO:0045045 - secretory pathway [Evidence TAS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : ATPase, Ca++ transporting, type 2C, member 1 product : calcium-transporting ATPase 2C1 protein_id : NP_778190.2

name	EG384978 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384978
definition	number : 1 pseudo : _no_value

name	EG384978 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384978
definition	number : 2 pseudo : _no_value

name	LOC100040921 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040921
definition	number : 3 pseudo : _no_value

name	LOC100040921 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040921
definition	number : 2 pseudo : _no_value

name	LOC100040921 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040921
definition	number : 1 pseudo : _no_value

clone name	MSMg01-387C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-203A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-091K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-449H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335I01
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-348C13.b	B6Ng01-348C13.g
ACC	GA129536	GA129537
length	792	1,052
definition	B6Ng01-348C13.b	B6Ng01-348C13.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(104,248,560 - 104,249,351)	(104,383,263 - 104,384,307)
sequence	gaattcactctgcagcaagaaataactttgaacttctgatccccctgctt ctgagtccccaaatgttgtgattataggagtgagcctccacacccagttt acactgtgctgaggactgagcccagggctttatatattctaggcaagtgc tctaccaaatgagctacattcctgcccctaaaacatcagcatttattacc tgctcttctcacgggcatcagagtttagataggctctccagaacccatct gttacagcagaagcttctgaaaccatttctattagacagctcagttcgtc ccccatcctcttggcttggtgggatggaagagcaatgggaactcggcaca ggttaaccagctccagggcaaagcttcccttctgaaacagctgatgttgg aacgtgggacggcatgagaagcaaatctaatttgataatcttaaatgaat gttgtggcatgaatgaaaagtgtccccgctaggctcctgtgtttgaagat ttgactcctaactagtggtgcttttgtggaaggcagtagagctggccagg ggaaatggctcactggaggcagtccataaggattttatagcctggccccc acctcctgcgttctttctgttttgtgaatgaggaggtaaagtgccctgct gcttctcagcattccctgtcctggactgtactctacaactgtgagccaac gaaacattccttaggctgctcttgtcaggtatttgtcacagcggtgagaa aagcagctggcggggtattagaaaagagatgggggtgggagg	gaattccaaatttgaggccatcctgagccacagtgagcatttttatattt ctgtatattgaattatctttgggaaccttttattcactgaacaaagtttt gactttcacttaccacatggcaccatgggggttgcaatcaattaattagc actgcttcaatctagccagagaggttagcatcaagcaggcatataaatac actgtatttgtccatctcaacacaggtaaaagcagagcctctgagcctcg ggattatggtcttttggggcccggtgatcttgtcttaagaggccagtcta tgtgctgtgagattttaggtagcatccctggcctctgcccactagatgcc aataccacactttctcttattctgtgaccagaaatgtctccaaatactgc caggcattcaggagaaggagaaagcaaagatcttcttcctccttattcca tgttaagaaccattgttgctgcccctagaagccttgcaggtgtggctgct gtatcatgtgtgcatcagtaggtagcagaaaggagaaagtctatgtctcg gctatgtctacaatcattgttttgacctataaacatctgaataattacta acctaacattcctccccaccacctccaaaaaaggagcctgagacgaccac caagctaaaggctggctcccagaactgggaggaagacttagactacaata acccacctgagactgaggccctctccccctgcatccagcaggagtggggc taagatgaccaccagactggtgccatggggcctggacagggagctagcct aggatgaccaccattcaggtgccatgcctggggcagggggagagtagaga ccatgctggagatgacccctgtctggtgctcataatgcacaagtcaggca tagcactcttaagaccactcctgagatgaactcagggcatcctcaacagg agcaagtcagtggtctggagagaaagagaaaacagaaggatgtgggcaca caaagaagttgagaactttggagggtcatgagaacaagcctgaatggtga gt
quality values	Open. Hide. 62 31 29 38 62 24 17 43 62 62 38 62 47 47 62 54 56 49 62 43 62 49 47 62 62 62 62 62 45 28 24 28 32 50 38 34 40 43 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 59 62 59 62 33 38 49 49 54 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 54 59 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 34 62 54 51 42 53 62 62 62 62 62 54 42 58 58 54 54 54 54 58 58 42 58 58 54 48 58 54 54 54 58 58 58 58 49 58 54 58 52 49 48 47 52 54 52 58 54 58 45 39 58 58 54 54 54 54 54 48 58 58 58 54 54 58 58 47 48 46 54 58 58 51 58 58 58 54 58 58 58 54 58 58 58 47 54 58 52 58 58 58 51 49 54 51 50 58 58 46 28 58 45 30 38 50 49 58 48 53 53 46 31 58 58 37 58 50 45 50 47 48 51 52 53 50 53 30 52 41 49 51 46 58 58 50 58 46 49 58 53 58 49 39 32 49 58 46 39 47 53 41 53 50 41 26 58 48 49 58 53 58 58 24 46 50 41 46 52 47 58 49 49 50 32 54 46 39 50 50 49 50 50 51 53 53 52 35 41 40 32 41 52 39 37 25 32 53 31 39 49 54 36 37 40 37 37 42 45 40 44 20 20 16 34 50 24 50 54 49 49 28 34 44 32 32 49 41 49 35 49 41 54 54 39 40 35 42 37 19 49 54 54 51 17 54 12 31 27 32 44 39 39 23 27 18 29 9 9 6 5	Open. Hide. 62 47 39 44 62 56 44 24 56 45 41 39 27 27 27 23 24 23 24 28 59 62 62 62 59 59 59 62 59 51 62 62 59 59 59 54 62 62 62 59 62 62 54 59 62 62 62 62 62 62 62 62 62 62 59 62 59 54 54 62 59 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 59 62 59 62 59 59 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 33 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 62 59 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 59 59 59 62 59 62 62 59 62 62 62 62 62 62 59 59 59 51 62 51 56 56 56 56 62 62 59 49 54 54 56 59 62 62 62 59 59 62 62 59 59 59 51 56 59 59 62 62 62 62 59 59 56 43 54 59 62 62 59 59 59 56 59 59 62 56 56 59 59 62 62 62 62 62 62 59 62 59 59 59 62 62 59 62 62 59 62 62 62 62 62 59 59 59 59 62 62 62 62 62 62 62 62 62 59 59 59 62 59 56 56 62 62 59 59 62 59 62 59 62 46 56 59 59 59 59 59 59 59 62 62 62 62 56 56 56 56 56 56 51 56 51 51 56 56 56 56 56 56 56 56 62 62 62 62 62 62 56 56 47 51 56 44 56 62 62 62 62 62 62 56 56 56 43 51 56 51 51 38 50 50 56 41 43 51 56 56 56 56 62 62 62 62 56 62 54 42 62 62 62 62 35 37 62 62 62 62 62 56 56 62 56 54 62 62 62 62 62 47 56 56 41 56 50 56 56 47 56 56 56 56 40 42 52 62 62 54 62 62 46 62 41 39 40 43 52 62 62 47 52 52 52 52 52 41 41 41 41 43 46 52 54 52 34 47 52 43 43 52 47 50 34 49 58 58 52 54 40 32 52 48 40 49 52 52 52 54 48 52 54 58 58 52 46 52 47 46 52 52 58 54 58 58 58 58 49 52 50 52 52 39 58 58 58 54 58 58 46 58 58 58 54 58 46 58 52 54 58 58 46 58 52 47 39 47 47 40 49 58 58 46 46 40 50 29 34 50 49 50 45 49 58 51 58 58 50 47 47 23 34 47 46 58 39 40 37 42 35 43 50 58 58 58 48 51 51 49 38 50 52 53 41 37 34 26 31 40 39 50 36 35 49 50 42 29 40 27 31 24 31 32 30 26 33 35 33 41 22 18 20 52 58 58 58 49 24 40 41 24 19 31 35 50 49 30 33 29 24 33 12 20 24 20 23 24 50 40 42 47 50 58 40 50 49 28 50 50 39 24 40 26 23 23 37 25 35 24 30 44 44 49 35 21 17 41 53 53 29 32 18 41 40 35 23 40 34 41 32 37 22 32 49 30 22 25 19 26 27 30 40 37 35 53 30 31 17 44 44 51 14 25 17 40 33 34 29 42 32 32 32 30 36 37 33 37 29 45 26 40 32 27 35 15 5 49 33 16 36 42 40 40 40 29 42 29 47 21 34 31 35 32 18 27 23 29 31 26 18 27 28 32 32 33 32 32 25 32 26 24 24 41 23 29 21 31 31 31 24 40 29 31 31 51 38 22 10 31 45 30 27 33 37 28 30 13 46 20 28 31 27 11 17 26 30 24 21 31 37 32 17 10 15 26 43 31 30 18 28 32 25 30 29 25 46 40 31 15 27 25 36 33 32 12 27 17 42 19 33 22 9 25 23 32 25 30 31 20 26 23 35 19 12 23 18 31 20 23 32 20 23 25 27 32 31 21 25 30 23 32 15 33 11 6 17 21 42 32 14 24 31 21 14 12 11 22 17 14 27 9 12 14 25 20 31 25 20 26 20 23 28 24 28 42 24 31 18 31 17 16 16 15 19 12 15 18 21 24 11 27 32 27 20 18 6 5 10 17 11 34 15 23 8 7 14 6 14 19 32 14 8 16 17 12 33 10 15 17 32 13 9 8 9 11 33 31 15 25 18 19 15 16 16 3 9 8 27 47 24 16 29 8 24 30 27 8 6 9 16 27 22 4 15 10 8 22 13 15 27 8 4 7 3 9 7 3 9 24 14 18 19 9 15 7 8 4 4 6 20 13 14 29 20 9 8 18 9 28 19 3 5 11 7 6 22 18 7 5 6 7 13 6 8 9 18 16 8 21 9 11 8 15 13 16 8 13

Alignment Information

BAC End 1

BAC End 2

seq1: chr9_104248560_104249351
seq2: B6Ng01-348C13.b_52_843

seq1  GAATTCACTCTGCAGCAAGAAATAACTTTGAACTTCTGATCCCCCTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGCAGCAAGAAATAACTTTGAACTTCTGATCCCCCTGCTT  50

seq1  CTGAGTCCCCAAATGTTGTGATTATAGGAGTGAGCCTCCACACCCAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCCCCAAATGTTGTGATTATAGGAGTGAGCCTCCACACCCAGTTT  100

seq1  ACACTGTGCTGAGGACTGAGCCCAGGGCTTTATATATTCTAGGCAAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGCTGAGGACTGAGCCCAGGGCTTTATATATTCTAGGCAAGTGC  150

seq1  TCTACCAAATGAGCTACATTCCTGCCCCTAAAACATCAGCATTTATTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCAAATGAGCTACATTCCTGCCCCTAAAACATCAGCATTTATTACC  200

seq1  TGCTCTTCTCACGGGCATCAGAGTTTAGATAGGCTCTCCAGAACCCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCTCACGGGCATCAGAGTTTAGATAGGCTCTCCAGAACCCATCT  250

seq1  GTTACAGCAGAAGCTTCTGAAACCATTTCTATTAGACAGCTCAGTTCGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGCAGAAGCTTCTGAAACCATTTCTATTAGACAGCTCAGTTCGTC  300

seq1  CCCCATCCTCTTGGCTTGGTGGGATGGAAGAGCAATGGGAACTCGGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCCTCTTGGCTTGGTGGGATGGAAGAGCAATGGGAACTCGGCACA  350

seq1  GGTTAACCAGCTCCAGGGCAAAGCTTCCCTTCTGAAACAGCTGATGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAACCAGCTCCAGGGCAAAGCTTCCCTTCTGAAACAGCTGATGTTGG  400

seq1  AACGTGGGACGGCATGAGAAGCAAATCTAATTTGATAATCTTAAATGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGGGACGGCATGAGAAGCAAATCTAATTTGATAATCTTAAATGAAT  450

seq1  GTTGTGGCATGAATGAAAAGTGTCCCCGCTAGGCTCCTGTGTTTGAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGCATGAATGAAAAGTGTCCCCGCTAGGCTCCTGTGTTTGAAGAT  500

seq1  TTGACTCCTAACTAGTGGTGCTTTTGTGGAAGGCAGTAGAGCTGGCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCCTAACTAGTGGTGCTTTTGTGGAAGGCAGTAGAGCTGGCCAGG  550

seq1  GGAAATGGCTCACTGGAGGCAGTCCATAAGGATTTTATAGCCTGGCCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGCTCACTGGAGGCAGTCCATAAGGATTTTATAGCCTGGCCCCC  600

seq1  ACCTCCTGCGTTCTTTCTGTTTTGTGAATGAGGAGGTAAAGTGCCCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTGCGTTCTTTCTGTTTTGTGAATGAGGAGGTAAAGTGCCCTGCT  650

seq1  GCTTCTCAGCATTCCCTGTCCTGGACTGTACTCTACAACTGTGAGCCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCAGCATTCCCTGTCCTGGACTGTACTCTACAACTGTGAGCCAAC  700

seq1  GAAACATTCCTTAGGCTGCTCTTGTCAGGTATTTGTCACAGCGGTGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATTCCTTAGGCTGCTCTTGTCAGGTATTTGTCACAGCGGTGAGAA  750

seq1  AAGCAGCTGGCGGGGTATTAGAAAAGAGATGGGGGTGGGAGG  792
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTGGCGGGGTATTAGAAAAGAGATGGGGGTGGGAGG  792

seq1: chr9_104383263_104384307
seq2: B6Ng01-348C13.g_67_1118 (reverse)

seq1  ACTCAC--ATCAGGCTGTTCCTCATGACCCTC--AAG-TCTCCACTTCTT  45
      ||||||   |||||||  | ||||||||||||  ||| |||| |||||||
seq2  ACTCACCATTCAGGCTTGTTCTCATGACCCTCCAAAGTTCTCAACTTCTT  50

seq1  TGTTGTGCCCACATCCTTCTG-TTTCTCTTTCTCTTCCAGACCACTGACT  94
      || |||||||||||||||||| |||||||||||| |||||||||||||||
seq2  TG-TGTGCCCACATCCTTCTGTTTTCTCTTTCTC-TCCAGACCACTGACT  98

seq1  TGCTCCTGTTGAGG-TG-CCTGGGTTCATCTCAGGAGTGGTCTTAAGAGT  142
      |||||||||||||| || |||| |||||||||||||||||||||||||||
seq2  TGCTCCTGTTGAGGATGCCCTGAGTTCATCTCAGGAGTGGTCTTAAGAGT  148

seq1  GCTATGCCTGACTTGTGCATTATG-GCACCAGACAGGGGTCATCTCCAGC  191
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCTATGCCTGACTTGTGCATTATGAGCACCAGACAGGGGTCATCTCCAGC  198

seq1  ATGGTCTCTACTCTCCCCCTGCCCCAGGCATGGCACCTGAATGGTGGTCA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTCTACTCTCCCCCTGCCCCAGGCATGGCACCTGAATGGTGGTCA  248

seq1  TCCTAGGCTAGCTCCCTGTCCAGGCCCCATGGCACCAGTCTGGTGGTCAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGCTAGCTCCCTGTCCAGGCCCCATGGCACCAGTCTGGTGGTCAT  298

seq1  CTTAGCCCCACTCCTGCTGGATGCAGGGGGAGAGGGCCTCAGTCTCAGGT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCCCACTCCTGCTGGATGCAGGGGGAGAGGGCCTCAGTCTCAGGT  348

seq1  GGGTTATTGTAGTCTAAGTCTTCCTCCCAGTTCTGGGAGCCAGCCTTTAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATTGTAGTCTAAGTCTTCCTCCCAGTTCTGGGAGCCAGCCTTTAG  398

seq1  CTTGGTGGTCGTCTCAGGCTCCTTTTTTGGAGGTGGTGGGGAGGAATGTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGGTCGTCTCAGGCTCCTTTTTTGGAGGTGGTGGGGAGGAATGTT  448

seq1  AGGTTAGTAATTATTCAGATGTTTATAGGTCAAAACAATGATTGTAGACA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGTAATTATTCAGATGTTTATAGGTCAAAACAATGATTGTAGACA  498

seq1  TAGCCGAGACATAGACTTTCTCCTTTCTGCTACCTACTGATGCACACATG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCGAGACATAGACTTTCTCCTTTCTGCTACCTACTGATGCACACATG  548

seq1  ATACAGCAGCCACACCTGCAAGGCTTCTAGGGGCAGCAACAATGGTTCTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCAGCCACACCTGCAAGGCTTCTAGGGGCAGCAACAATGGTTCTT  598

seq1  AACATGGAATAAGGAGGAAGAAGATCTTTGCTTTCTCCTTCTCCTGAATG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGAATAAGGAGGAAGAAGATCTTTGCTTTCTCCTTCTCCTGAATG  648

seq1  CCTGGCAGTATTTGGAGACATTTCTGGTCACAGAATAAGAGAAAGTGTGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGTATTTGGAGACATTTCTGGTCACAGAATAAGAGAAAGTGTGG  698

seq1  TATTGGCATCTAGTGGGCAGAGGCCAGGGATGCTACCTAAAATCTCACAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCATCTAGTGGGCAGAGGCCAGGGATGCTACCTAAAATCTCACAG  748

seq1  CACATAGACTGGCCTCTTAAGACAAGATCACCGGGCCCCAAAAGACCATA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGACTGGCCTCTTAAGACAAGATCACCGGGCCCCAAAAGACCATA  798

seq1  ATCCCGAGGCTCAGAGGCTCTGCTTTTACCTGTGTTGAGATGGACAAATA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGAGGCTCAGAGGCTCTGCTTTTACCTGTGTTGAGATGGACAAATA  848

seq1  CAGTGTATTTATATGCCTGCTTGATGCTAACCTCTCTGGCTAGATTGAAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTATTTATATGCCTGCTTGATGCTAACCTCTCTGGCTAGATTGAAG  898

seq1  CAGTGCTAATTAATTGATTGCAACCCCCATGGTGCCATGTGGTAAGTGAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTAATTAATTGATTGCAACCCCCATGGTGCCATGTGGTAAGTGAA  948

seq1  AGTCAAAACTTTGTTCAGTGAATAAAAGGTTCCCAAAGATAATTCAATAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAACTTTGTTCAGTGAATAAAAGGTTCCCAAAGATAATTCAATAT  998

seq1  ACAGAAATATAAAAATGCTCACTGTGGCTCAGGATGGCCTCAAATTTGGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATATAAAAATGCTCACTGTGGCTCAGGATGGCCTCAAATTTGGA  1048

seq1  ATTC  1045
      ||||
seq2  ATTC  1052

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Alignment Information