BAC Information

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BAC

Clone NameB6Ng01-348G21
Chromosome4 (Build37)9 (Build37)
Map Location 113,232,468 - 113,233,688118,117,651 - 118,118,235
singlet/doubletsingletsinglet
Overlap geneLOC242627
Upstream geneLOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik, LOC433745, LOC545668, LOC230622, LOC100040607
Downstream geneLOC100040625, A630098G03Rik, LOC666048
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348G21.bB6Ng01-348G21.g
ACCGA129727GA129728
length1,212940
definitionB6Ng01-348G21.b B6Ng01-348G21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(113,232,468 - 113,233,688)(118,117,651 - 118,118,235)
sequence
gaattctgttgaatagcaaatctttcatctctaaaataaaatgacaataa
attcaattagtgatttttatatcatagagtttggtagtaaagggtaacat
atttaacttttcccgaatctagagctgcactgccatcagtagcatgcatt
agatttgtaaacttcattgaaatatttctgcctgtttattctttcaagct
gagaagaggaaaatggtcaatactttttgctgtattgcctacacctagat
ctccatttgatttactgatgtcaggaaaagttctggtgtacctttcttgg
attcacactcacagttccaatagtaacccttcctttatcaaatgaataca
ccctcaaaaacacttggaataagaagttggtttgtttgtttgtttttgtt
tttgttttttctgatttgtacctaggacaatcattacacttagaatttac
ttgttcaaaactggtttcataaggacacatttttcccacaataaaagtac
cagacactttaagaccagaggactagagcagcttgttcataatatcttct
ttatgatcttgtttattttaactgtataagcaggcatttacacattactg
atatttaggtatagaaagacctagcaaattagcatgttacatatcagaac
caatatcagttttatccctctccacttgtctatatgtggttcctaggact
tttgatttctcctaacatattgccataacctattcacagtttcaaacacc
aatgcagttatcctaaacggcctagcatctagttaccataccatttggtt
taccactgaaacagaaataagcttttaatcagtgaagttttctacagagt
gtgcataatctttcataagtagggtgggaattatgcttgctcccaaacct
ttacccaagacattaaagttattgagcaaaattgttccttccttttcatc
atggttgaaatgagtttgaatttgtatagcagaggatagcacttgaccaa
ataaatgatctctcagtatctgaattctatgggtcttgcatcatgtattc
aaattgccatctggtaaataacatgtctatttagtgtatgtcctaatcat
gcagtgtcacaatcatcttgggtcgaacctagcatcaatttggtataatt
tgtcccttctaatccaatctgactaatgaacattaggacatgcacctaaa
caacacatgtaa
gaattcacgcagttgaatacttctcaacagtctgttttatgggaacactt
cattaccaccattccccagctgaagagttctgaatccacaccggatcctt
ctcaacagtctgttttacaggaacactttatgaccgtgacccgcagttct
ggttctggaatgagggatcttccttgcgccggtggtggtaattcccgtcc
cgggttttttcgtcccgggttccggcaccaactcttacacgcgttctcgc
gaccggccaggaagaacacaacaaaccagaatcttctgcggcaaaagctt
tattgcttacatcttcaggagcaagagagcaatagcaagagagcaagagc
aagagagagagagagagagaaagagtgcaagagagctttattgcttacat
cttcaggagccagagagcaagagagcaagagagagaatcgcgaaaccccg
tcccttttaagaattatcctcctcctaggatgtgtcactccctgattggc
tggagcccatcggccgagttgtcgtcacagggaaggcagagtacatggag
tggagaactacccttggcacatgcgcagattatttgtttaccacttagaa
cacaggatgtcagcgccatcttgcaacggcgaatgtgagggtggctccct
acattgaacttcattagttttgctgagacacatggtttgttgtaattttt
cagagacagaaaaggctttgacagatctaaatgtcttaaattcttattta
gctttagttcttaaataatactcgagataaagttgggatatatgtacagg
acaatgtagacaaatgtttctttaaggttcacctaaagatgaatttgtca
gctagcatgctagggatatttttactaaaatatcaatactatgaaccaga
gaggaatattgatcaatgaagcagacatgtggaatgaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_113232468_113233688
seq2: B6Ng01-348G21.b_49_1260

seq1  GAATTCTGTTGAATAGCAAATCTTTCATCTCTAAAATAAAATGACAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGAATAGCAAATCTTTCATCTCTAAAATAAAATGACAATAA  50

seq1  ATTCAATTAGTGATTTTTATATCATAGAGTTTGGTAGTAAAGGGTAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTAGTGATTTTTATATCATAGAGTTTGGTAGTAAAGGGTAACAT  100

seq1  ATTTAACTTTTCCCGAATCTAGAGCTGCACTGCCATCAGTAGCATGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTTTTCCCGAATCTAGAGCTGCACTGCCATCAGTAGCATGCATT  150

seq1  AGATTTGTAAACTTCATTGAAATATTTCTGCCTGTTTATTCTTTCAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGTAAACTTCATTGAAATATTTCTGCCTGTTTATTCTTTCAAGCT  200

seq1  GAGAAGAGGAAAATGGTCAATACTTTTTGCTGTATTGCCTACACCTAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGGAAAATGGTCAATACTTTTTGCTGTATTGCCTACACCTAGAT  250

seq1  CTCCATTTGATTTACTGATGTCAGGAAAAGTTCTGGTGTACCTTTCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTGATTTACTGATGTCAGGAAAAGTTCTGGTGTACCTTTCTTGG  300

seq1  ATTCACACTCACAGTTCCAATAGTAACCCTTCCTTTATCAAATGAATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACACTCACAGTTCCAATAGTAACCCTTCCTTTATCAAATGAATACA  350

seq1  CCCTCAAAAACACTTGGAATAAGAAGTTGGTTTGTTTGTTTGTTTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAAAACACTTGGAATAAGAAGTTGGTTTGTTTGTTTGTTTTTGTT  400

seq1  TTTGTTTTTTCTGATTTGTACCTAGGACAATCATTACACTTAGAATTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTCTGATTTGTACCTAGGACAATCATTACACTTAGAATTTAC  450

seq1  TTGTTCAAAACTGGTTTCATAAGGACACATTTTTCCCACAATAAAAGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAAAACTGGTTTCATAAGGACACATTTTTCCCACAATAAAAGTAC  500

seq1  CAGACACTTTAAGACCAGAGGACTAGAGCAGCTTGTTCATAATATCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTTTAAGACCAGAGGACTAGAGCAGCTTGTTCATAATATCTTCT  550

seq1  TTATGATCTTGTTTATTTTAACTGTATAAGCAGGCATTTACACATTACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATCTTGTTTATTTTAACTGTATAAGCAGGCATTTACACATTACTG  600

seq1  ATATTTAGGTATAGAAAGACCTAGCAAATTAGCATGTTACATATCAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGGTATAGAAAGACCTAGCAAATTAGCATGTTACATATCAGAAC  650

seq1  CAATATCAGTTTTATCCCTCTCCACTTGTCTATATGTGGTTCCTAGGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCAGTTTTATCCCTCTCCACTTGTCTATATGTGGTTCCTAGGACT  700

seq1  TTTGATTTCTCCTAACATATTGCCATAACCTATTCACAGTTTCAAACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTCTCCTAACATATTGCCATAACCTATTCACAGTTTCAAACACC  750

seq1  AATGCAGTTATCCTAAACGGCCTAGCATCTAGTTACCATACCATTTGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGTTATCCTAAACGGCCTAGCATCTAGTTACCATACCATTTGGTT  800

seq1  TACCACTGAAACAGAAATAAGCTTTTAATCAGTGAAGTTTTCTACAGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTGAAACAGAAATAAGCTTTTAATCAGTGAAGTTTTCTACAGAGT  850

seq1  GTGCATAATC-TTCATAAGTAGGGTGGGAATTATGCTTGCTCCCAAACCT  899
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTGCATAATCTTTCATAAGTAGGGTGGGAATTATGCTTGCTCCCAAACCT  900

seq1  TTACCCAAGACATTAAAGTTATTGAGCAAAATTGTTCCTTCCTTTTCATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCAAGACATTAAAGTTATTGAGCAAAATTGTTCCTTCCTTTTCATC  950

seq1  ATGGTTGAAATGAGTTTGAATTTGTATAGCAGAGGATAGCACTTGACCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGAAATGAGTTTGAATTTGTATAGCAGAGGATAGCACTTGACCAA  1000

seq1  ATAAATGATCTCTCAGTATCTGAATTCTATTGGGTC-TGCATCATGTA-T  1047
      ||||||||||||||||||||||||||||| |||||| ||||||||||| |
seq2  ATAAATGATCTCTCAGTATCTGAATTCTA-TGGGTCTTGCATCATGTATT  1049

seq1  CAAATTGCCATCTGGTACATAACATGTCTTATTTTAGTGTAATTGTCCCT  1097
      ||||||||||||||||| |||||||||||   |||||||||  |||||  
seq2  CAAATTGCCATCTGGTAAATAACATGTCT--ATTTAGTGTA--TGTCCTA  1095

seq1  ATCATGCCAGTTGTCACATTCATCTTTGGTCGAACCTAGCAATCCATTTT  1147
      |||||| ||| ||||||| ||||||| ||||||||||||| ||| |||| 
seq2  ATCATG-CAG-TGTCACAATCATCTTGGGTCGAACCTAGC-ATCAATTTG  1142

seq1  GTATATTTTGTCCTCTCTATATCCCATCTTGACTACATGAACTATTTAAG  1197
      ||||| |||||||  |||| |||| ||| |||||| ||||||   ||| |
seq2  GTATAATTTGTCCCTTCTA-ATCCAATC-TGACTA-ATGAAC--ATTAGG  1187

seq1  ACATGCACCTAAACAACA-ATGTAA  1221
      |||||||||||||||||| ||||||
seq2  ACATGCACCTAAACAACACATGTAA  1212

seq1: chr9_118117651_118118235
seq2: B6Ng01-348G21.g_63_625 (reverse)

seq1  GGGTAGTTCTCCACCCCATGTGCTCTGCCTTCCCCGTGACGACAACTGGG  50
      |||||||||||||| |||||| |||||||||||| |||||||||||| ||
seq2  GGGTAGTTCTCCACTCCATGTACTCTGCCTTCCCTGTGACGACAACTCGG  50

seq1  CCGATGGGCTGCAGCCAATCAGGGAGTGACACGTCCTAGGCGGAGAATAA  100
      |||||||||| ||||||||||||||||||||| ||||||| |||| ||||
seq2  CCGATGGGCTCCAGCCAATCAGGGAGTGACACATCCTAGGAGGAGGATAA  100

seq1  TTCTCCTTAAAAGGGACGGGGTTTTGCCATTCTCTCTCTTGCTCTGGCTC  150
      ||   ||||||||||||||||||| || |||||||||||||||    |||
seq2  TT---CTTAAAAGGGACGGGGTTTCGCGATTCTCTCTCTTGCT----CTC  143

seq1  TTG--CTTTTGCTCTT----------GCACTCTAGCGCTCTTGCGCTCTG  188
      |||  || | |||| |          ||| |  ||| ||||||| |||| 
seq2  TTGCTCTCTGGCTCCTGAAGATGTAAGCAATAAAGCTCTCTTGCACTCTT  193

seq1  GCTCCTAAAGATGTAAGCAATAGAGCTCTTGCTCTC------TTGCTCTC  232
       || ||     | |   |  |   ||||||||||||      ||||||||
seq2  TCT-CTCTCTCTCT---CTCTCTTGCTCTTGCTCTCTTGCTATTGCTCTC  239

seq1  TGGCTCCTGAAGATGTAAGCAATAAAG-TTTTGCCGCAGAAGATTCTGGT  281
      | ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTGCTCCTGAAGATGTAAGCAATAAAGCTTTTGCCGCAGAAGATTCTGGT  289

seq1  TTGCTGCGTCTTTCCTGGCCGGTTGCGCGAACGCGTGTAAGAGTTGGTGC  331
      ||| || ||  |||||||||||| ||| ||||||||||||||||||||||
seq2  TTGTTGTGTTCTTCCTGGCCGGTCGCGAGAACGCGTGTAAGAGTTGGTGC  339

seq1  CGAAACCCGGGACGAGAAAACCCGTGACGAGAAATCCTGGGATGAGAAAA  381
      || |||||||||||| |||||||| |||| |||                 
seq2  CGGAACCCGGGACGAAAAAACCCGGGACGGGAA-----------------  372

seq1  CCCTGGACGGTTACCATCACCGGCGCAAGGAAGATCCCTCATTCCGGAAC  431
                |||||| |||||||||||||||||||||||||||| ||||
seq2  ----------TTACCACCACCGGCGCAAGGAAGATCCCTCATTCCAGAAC  412

seq1  CAGAACTGCGGGTCATGGTAATGAAGTGTTCCCGTAAAACAGACTGTTGA  481
      ||||||||||||||| ||| || ||||||||| |||||||||||||||||
seq2  CAGAACTGCGGGTCACGGTCATAAAGTGTTCCTGTAAAACAGACTGTTGA  462

seq1  GAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGCTGGGGAATGGTGGT  531
      |||||||    | | ||| |||||||||||||||||||||||||||||||
seq2  GAAGGAT---CCGGTGTGGATTCAGAACTCTTCAGCTGGGGAATGGTGGT  509

seq1  AATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCGTGA  581
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  AATGAAGTGTTCCCATAAAACAGACTGTTGAGAAGTATTCAACTGCGTGA  559

seq1  ATTC  585
      ||||
seq2  ATTC  563