BAC Information

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BAC

Clone NameB6Ng01-348H01
Chromosome9 (Build37)18 (Build37)
Map Location 25,676,530 - 25,677,50770,907,291 - 70,907,353
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
Downstream geneB3gat1, BC038479, Glb1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348H01.bB6Ng01-348H01.g
ACCGA129735GA129736
length978941
definitionB6Ng01-348H01.b B6Ng01-348H01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,676,530 - 25,677,507)(70,907,291 - 70,907,353)
sequence
gaattcttctgctaaagattattcctaagactgtttgaggatcaccctgc
ttggcattatctcaaacacgcatctggtcatgttttcaggaaaagtctgt
ttgataagtatctgatatcctgaatattgaactcatgtggtaacaaacca
aagaaggtaactaagctgttagatgaccatgctgaaaaagtgtatcttcc
aagtgacagaactaatattattatcttgctcttaaaacaaatctccaagt
cggctatggaaaaaaaaaaaaaaaaagaatgggatatacatttaaagggc
agtacaagacagaggaaagtttgctaaaggtagacagagcacacatgcac
aactccttgaattttggggtaaccagcttctccccatctccattctctct
gtgtgtttctgtgtctgtctctctgcttctttgtctctgtttctatctct
ctgtgtgtttcataatatatattaatatgtaataagttaaaagtttatat
gaatttcaaacagatgagtaactaactttgaaaaagtatactgacataac
tataaatgagaatttattcttcctaaatatctatagataacatgttttgg
ctatagtatttatttataaattgccaaagccatcatcaactacatattgc
aaacttgcctcatacctggtgaaatattagagaaggatatagtaaacaaa
ttcacctaaacacaaatattctacaaactaagtgattataaaatggcgtc
aagtagtactaagaaggaaaatagaggagaataagtgatgtggagagtaa
cacaaagagagctgctgttttaaacagggtactgtataaaacctgagtaa
atagggagagaaatatgtataaataagtcacatggagatctgagaaaagg
aaatttctgctcaagataaaagctttgactatatttctttgcaatagatg
gatggatggatggatggatggatggatg

gaattctcacccgaggaataccgaaaggctgagaaacacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacagccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctagaaatcagtctggtgattcctca
gaaaattgtacatagtactacgggaggatcccgcaatacctctcctgggc
atatatccagaagatttcccaaccagtaagaaggacacatgctccactat
gttcatagcagccttatttataatagctagaacctggaaagaacccagat
gcctctcaacagaggaatggatacaaaaaaaatttacacaatggggtact
actcagctattaaaaagaatgaatttatgaatttcctaggcaaatggatg
gacctggagggcatcatcctgagtgaggtaacccaatcacaaaagaactc
aaatgaaatgtactcactgataagtggatattagcccagaaacttagtat
agcgagatataaggtacaagatgcaaaacacatgaaactgaagaagaacg
aagaccaaagtgtggacactttgctccttcttagaattgaaaacaatcac
ccatggaaggagttacagagacaaagtttggagcagagacaaaaggatgg
accatctagagactgccatatccagggatccatcccataattagcctcca
aacgatgacaccatggcatacactagcaagctgacattattgtatacact
agcaagactttgctgaaaggaccctgatatagctgtccctttgtgagact
aggccggggcctagcaaacacagaagtggatgctcacagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_25676530_25677507
seq2: B6Ng01-348H01.b_44_1021 (reverse)

seq1  CATCCATCCATCCATCCATCCATCCATCCATCTATTGCAAAGAAATATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCCATCCATCCATCCATCCATCCATCTATTGCAAAGAAATATAG  50

seq1  TCAAAGCTTTTATCTTGAGCAGAAATTTCCTTTTCTCAGATCTCCATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTTTTATCTTGAGCAGAAATTTCCTTTTCTCAGATCTCCATGTG  100

seq1  ACTTATTTATACATATTTCTCTCCCTATTTACTCAGGTTTTATACAGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTATACATATTTCTCTCCCTATTTACTCAGGTTTTATACAGTAC  150

seq1  CCTGTTTAAAACAGCAGCTCTCTTTGTGTTACTCTCCACATCACTTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTAAAACAGCAGCTCTCTTTGTGTTACTCTCCACATCACTTATTC  200

seq1  TCCTCTATTTTCCTTCTTAGTACTACTTGACGCCATTTTATAATCACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTATTTTCCTTCTTAGTACTACTTGACGCCATTTTATAATCACTTA  250

seq1  GTTTGTAGAATATTTGTGTTTAGGTGAATTTGTTTACTATATCCTTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAGAATATTTGTGTTTAGGTGAATTTGTTTACTATATCCTTCTCT  300

seq1  AATATTTCACCAGGTATGAGGCAAGTTTGCAATATGTAGTTGATGATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCACCAGGTATGAGGCAAGTTTGCAATATGTAGTTGATGATGGC  350

seq1  TTTGGCAATTTATAAATAAATACTATAGCCAAAACATGTTATCTATAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAATTTATAAATAAATACTATAGCCAAAACATGTTATCTATAGAT  400

seq1  ATTTAGGAAGAATAAATTCTCATTTATAGTTATGTCAGTATACTTTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGAAGAATAAATTCTCATTTATAGTTATGTCAGTATACTTTTTCA  450

seq1  AAGTTAGTTACTCATCTGTTTGAAATTCATATAAACTTTTAACTTATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGTTACTCATCTGTTTGAAATTCATATAAACTTTTAACTTATTAC  500

seq1  ATATTAATATATATTATGAAACACACAGAGAGATAGAAACAGAGACAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATATATATTATGAAACACACAGAGAGATAGAAACAGAGACAAAG  550

seq1  AAGCAGAGAGACAGACACAGAAACACACAGAGAGAATGGAGATGGGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGAGACAGACACAGAAACACACAGAGAGAATGGAGATGGGGAGA  600

seq1  AGCTGGTTACCCCAAAATTCAAGGAGTTGTGCATGTGTGCTCTGTCTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTTACCCCAAAATTCAAGGAGTTGTGCATGTGTGCTCTGTCTACC  650

seq1  TTTAGCAAACTTTCCTCTGTCTTGTACTGCCCTTTAAATGTATATCCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCAAACTTTCCTCTGTCTTGTACTGCCCTTTAAATGTATATCCCAT  700

seq1  TCTTTTTTTTTTTTTTTTTCCATAGCCGACTTGGAGATTTGTTTTAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTTTTTTTTTCCATAGCCGACTTGGAGATTTGTTTTAAGAG  750

seq1  CAAGATAATAATATTAGTTCTGTCACTTGGAAGATACACTTTTTCAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAATAATATTAGTTCTGTCACTTGGAAGATACACTTTTTCAGCAT  800

seq1  GGTCATCTAACAGCTTAGTTACCTTCTTTGGTTTGTTACCACATGAGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCTAACAGCTTAGTTACCTTCTTTGGTTTGTTACCACATGAGTTC  850

seq1  AATATTCAGGATATCAGATACTTATCAAACAGACTTTTCCTGAAAACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCAGGATATCAGATACTTATCAAACAGACTTTTCCTGAAAACATG  900

seq1  ACCAGATGCGTGTTTGAGATAATGCCAAGCAGGGTGATCCTCAAACAGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATGCGTGTTTGAGATAATGCCAAGCAGGGTGATCCTCAAACAGTC  950

seq1  TTAGGAATAATCTTTAGCAGAAGAATTC  978
      ||||||||||||||||||||||||||||
seq2  TTAGGAATAATCTTTAGCAGAAGAATTC  978


seq1: chr18_70907291_70907353
seq2: B6Ng01-348H01.g_689_751 (reverse)

seq1  AATTCTAAGAAGGGGCGTAGTGTCCACACTTTGGTCTTTGTTCTTCTTGT  50
      ||||||||||||| ||  |||||||||||||||||||| |||||||||  
seq2  AATTCTAAGAAGGAGCAAAGTGTCCACACTTTGGTCTTCGTTCTTCTTCA  50

seq1  GTTTCATGTGTTT  63
      |||||||||||||
seq2  GTTTCATGTGTTT  63


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