BAC Information

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BAC

Clone NameB6Ng01-348J17
Chromosome9 (Build37)
Map Location 81,425,347 - 81,528,163
singlet/doubletdoublet
Overlap geneLOC100039038, Htr1b
Upstream geneEG666534
Downstream geneLOC671392, 4930486G11Rik, LOC100039085
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348J17.bB6Ng01-348J17.g
ACCGA129852GA129853
length1,047965
definitionB6Ng01-348J17.b B6Ng01-348J17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,425,347 - 81,426,384)(81,527,202 - 81,528,163)
sequence
gaattcagttcctcagggaactaccatttcagactccagtgatcatacta
atcctaatattttgatcatccaaagtggtggtttaagtttcaatcccatt
tctgatactataaaccaggagaaaaaagagggatggaaagacctgtcttt
gagatcttctggaaatggtatacaatttctatagttctctcattggcaag
agtggaatatagcaaaattaagtataaaaatagctgagaaaggattattt
accataggacatacagtctgcaaaaagacaaggacagagacgggcagatc
ctggggtcttgttttccaagagtctgtctgaaatagtaagcattacacta
ggttcagtgagagaaatcgcctcaaaaagtaagttggaaagcaaaaaaag
aaacaggtatctggcattgattgatctctggcttatagaaatgagtacat
gggcaagtgcacacacatacacacacacacacacacacacacacacacac
acagcagactactcaaagtgagtattagatataagaaatttgcatttaga
aaccataaaaataatggtgagataagacaaataacacatactaaaatttg
aaaaattctgattttattttgttgagattataatatattacatcatttct
ccattacccttcctccttctaatgcctcccatataattttttttattcat
ttaaaaaaatcatggcctttttttccattaactgttgttatatacataca
tgaatgtatatgtgtgtgtttgtgtgtctattcctaaatctataagtaga
accgattcaatctgtatacttgttatttgtatatatattttttgttttat
tttaatcctttattatttttttattagatatttatttcatttacattttc
caatgctatccccaaaagtcccccacctgctccccccccccacttccccc
aacccacccacttcccacttattgacccttggtgtttccctgtacctgag
gcaaataaggttgcaggaccaatgggccttctctttccactggatga

gaattctagtgggaaccttagtccttaacacggggagaatacattgccat
ttactttgcttttgattcctaagtagaccctgtatttgtttctgttcaga
ttggaggcgaaaccaaggctagggaatctgctccgggtttggggacccag
ctgctatgcttactgccccctatggcagaattgctaaccttttgcctagg
gcaaaggagacagtggtgactgtagttgtgatggctcagagaccccttta
tttttccttttctgggagggctgagtggaagaacttcttactgaaaagtc
gggcgctgagctgcggagccactggggcgggaggatggggtggaaggttt
aatttcgcatacagtaggcttctctttatgacactgttttacatcttgca
gacagcttctctcccgttgactcacaaagttaaaggggaggattgaatga
caagcacaaatttctaaatgtagattgggaaattgtgtttttaatgtact
aagagtcaaagatgtctcaaagccccaggcatgaagtatagcatgcacat
attggctgcttccttctaaggaagcatccctggcgcctcctaaactgggt
gtggccctcggtgtggggttagattctagaagggagagttcagatattgg
cgcttgctccacctaccaccaaccaccaggaaagagggaggtggtggtag
gcggaagcctagacccggacgcccgcactaagtctgtggcagcgactaaa
gacgtgggttgactgcggagcgcaagactcaaagcttctcagagggctaa
aacaggacgtcccattacccattccctgcttgaaaggcgactccagtttt
cacgggtcgggagatgtgacaggtgaagaaaactgcgagagagggcggta
aggaccctgccggaaatctgtaccagggactggatctgggcggaagaaaa
aagaaggaaggaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_81425347_81426384
seq2: B6Ng01-348J17.b_49_1095

seq1  GAATTCAGTTCCTCAGGGAACTACCATTTCAGACTCCAGTGATCATACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCTCAGGGAACTACCATTTCAGACTCCAGTGATCATACTA  50

seq1  ATCCTAATATTTTGATCATCCAAAGTGGTGGTTTAAGTTTCAATCCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAATATTTTGATCATCCAAAGTGGTGGTTTAAGTTTCAATCCCATT  100

seq1  TCTGATACTATAAACCAGGAGAAAAAAGAGGGATGGAAAGACCTGTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATACTATAAACCAGGAGAAAAAAGAGGGATGGAAAGACCTGTCTTT  150

seq1  GAGATCTTCTGGAAATGGTATACAATTTCTATAGTTCTCTCATTGGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTTCTGGAAATGGTATACAATTTCTATAGTTCTCTCATTGGCAAG  200

seq1  AGTGGAATATAGCAAAATTAAGTATAAAAATAGCTGAGAAAGGATTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAATATAGCAAAATTAAGTATAAAAATAGCTGAGAAAGGATTATTT  250

seq1  ACCATAGGACATACAGTCTGCAAAAAGACAAGGACAGAGACGGGCAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGGACATACAGTCTGCAAAAAGACAAGGACAGAGACGGGCAGATC  300

seq1  CTGGGGTCTTGTTTTCCAAGAGTCTGTCTGAAATAGTAAGCATTACACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTCTTGTTTTCCAAGAGTCTGTCTGAAATAGTAAGCATTACACTA  350

seq1  GGTTCAGTGAGAGAAATCGCCTCAAAAAGTAAGTTGGAAAGCAAAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGTGAGAGAAATCGCCTCAAAAAGTAAGTTGGAAAGCAAAAAAAG  400

seq1  AAACAGGTATCTGGCATTGATTGATCTCTGGCTTATAGAAATGAGTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGTATCTGGCATTGATTGATCTCTGGCTTATAGAAATGAGTACAT  450

seq1  GGGCAAGTGCACACACATACACACACACACACACACACACACACACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGTGCACACACATACACACACACACACACACACACACACACACAC  500

seq1  ACAGCAGACTACTCAAAGTGAGTATTAGATATAAGAAATTTGCATTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGACTACTCAAAGTGAGTATTAGATATAAGAAATTTGCATTTAGA  550

seq1  AACCATAAAAATAATGGTGAGATAAGACAAATAACACATACTAAAATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAAAAATAATGGTGAGATAAGACAAATAACACATACTAAAATTTG  600

seq1  AAAAATTCTGATTTTATTTTGTTGAGATTATAATATATTACATCATTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCTGATTTTATTTTGTTGAGATTATAATATATTACATCATTTCT  650

seq1  CCATTACCCTTCCTCCTTCTAATGCCTCCCATATAATTTTTTTTATTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACCCTTCCTCCTTCTAATGCCTCCCATATAATTTTTTTTATTCAT  700

seq1  TTAAAAAAATCATGGCC-TTTTTTCCATTAACTGTTGTTATATACATACA  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTAAAAAAATCATGGCCTTTTTTTCCATTAACTGTTGTTATATACATACA  750

seq1  TGAATGTATATGTGTGTGTTTGTGTGTCTATTCCTAAATCTATAAGTAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTATATGTGTGTGTTTGTGTGTCTATTCCTAAATCTATAAGTAGA  800

seq1  ACCGATTCAATCTGTATACTTGTTATTTGTATATATATTTTTTGTTTTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGATTCAATCTGTATACTTGTTATTTGTATATATATTTTTTGTTTTAT  850

seq1  TTTAATCC-TTATTA-TTTTTTATTAGATATTTATTTCATTTACA-TTTC  896
      |||||||| |||||| ||||||||||||||||||||||||||||| ||||
seq2  TTTAATCCTTTATTATTTTTTTATTAGATATTTATTTCATTTACATTTTC  900

seq1  CAATGCTAT-CCCAAAAGTCCCCCACCTGCT-CCCCCCCCCACT--CCCC  942
      ||||||||| ||||||||||||||||||||| ||||||||||||  ||||
seq2  CAATGCTATCCCCAAAAGTCCCCCACCTGCTCCCCCCCCCCACTTCCCCC  950

seq1  CACCCACCCAC-TCCCACTTATTGGCCC-TGGTG-TTCCCTGTA-CTGAG  988
       |||||||||| |||||||||||| ||| ||||| ||||||||| |||||
seq2  AACCCACCCACTTCCCACTTATTGACCCTTGGTGTTTCCCTGTACCTGAG  1000

seq1  GCAGATAAAGTTTGCAGGACCAATGGGCC-TCTCTTTCCACTGATGGATG  1037
      ||| || ||| |||||||||||||||||| |||||||||||   ||||||
seq2  GCAAAT-AAGGTTGCAGGACCAATGGGCCTTCTCTTTCCAC---TGGATG  1046

seq1  A  1038
      |
seq2  A  1047


seq1: chr9_81527202_81528163
seq2: B6Ng01-348J17.g_67_1030 (reverse)

seq1  CCTCCCTCCTTC-TTTTCCTCCCGCCCAGATCCAGTCCCTGCTACAGAAT  49
      ||||| |||||| |||| || |||||||||||||||||||| ||||| ||
seq2  CCTCCTTCCTTCTTTTTTCTTCCGCCCAGATCCAGTCCCTGGTACAG-AT  49

seq1  CTCCCGCAGGGTCC-TACCGCCCTCTCTCGCAGTTTTCTTCACCTTGTCC  98
       ||| ||||||||| ||||||||||||||||||||||||||||| |||| 
seq2  TTCCGGCAGGGTCCTTACCGCCCTCTCTCGCAGTTTTCTTCACC-TGTCA  98

seq1  CTTCTCCCGACCC-TGAAACTTGGAGTCGCCTTTCAAGCAGGGAATGGGT  147
      | ||||||||||| |||||  |||||||||||||||||||||||||||||
seq2  CATCTCCCGACCCGTGAAAACTGGAGTCGCCTTTCAAGCAGGGAATGGGT  148

seq1  AATGGGACGTCCTGTTCTAG-CCTCTGAG-AGCTTTGAGTCTTTGCGCTC  195
      |||||||||||||||| ||| |||||||| ||||||||||| ||||||||
seq2  AATGGGACGTCCTGTTTTAGCCCTCTGAGAAGCTTTGAGTC-TTGCGCTC  197

seq1  CGCAGTCAACCCACGTCTTTAGTCGCTGCCACAGACTTAGTGCGGGCGTC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTCAACCCACGTCTTTAGTCGCTGCCACAGACTTAGTGCGGGCGTC  247

seq1  CGGGTCTAGGCTTCCGCCTACCACCACCTCCCTCTTTCCTGGTGGTTGGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCTAGGCTTCCGCCTACCACCACCTCCCTCTTTCCTGGTGGTTGGT  297

seq1  GGTAGGTGGAGCAAGCGCCAATATCTGAACTCTCCCTTCTGGAATCTAAC  345
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTAGGTGGAGCAAGCGCCAATATCTGAACTCTCCCTTCTAGAATCTAAC  347

seq1  CCCACACCGAGGGCCACACCCAGTTTAGGAGGCGCCAGGGATGCTTCCTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACCGAGGGCCACACCCAGTTTAGGAGGCGCCAGGGATGCTTCCTT  397

seq1  AGAAGGAAGCAGCCAATATGTGCATGCTATACTTCATGCCTGGGGCTTTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAGCAGCCAATATGTGCATGCTATACTTCATGCCTGGGGCTTTG  447

seq1  AGACATCTTTGACTCTTAGTACATTAAAAACACAATTTCCCAATCTACAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCTTTGACTCTTAGTACATTAAAAACACAATTTCCCAATCTACAT  497

seq1  TTAGAAATTTGTGCTTGTCATTCAATCCTCCCCTTTAACTTTGTGAGTCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATTTGTGCTTGTCATTCAATCCTCCCCTTTAACTTTGTGAGTCA  547

seq1  ACGGGAGAGAAGCTGTCTGCAAGATGTAAAACAGTGTCATAAAGAGAAGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGAGAGAAGCTGTCTGCAAGATGTAAAACAGTGTCATAAAGAGAAGC  597

seq1  CTACTGTATGCGAAATTAAACCTTCCACCCCATCCTCCCGCCCCAGTGGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTATGCGAAATTAAACCTTCCACCCCATCCTCCCGCCCCAGTGGC  647

seq1  TCCGCAGCTCAGCGCCCGACTTTTCAGTAAGAAGTTCTTCCACTCAGCCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCAGCTCAGCGCCCGACTTTTCAGTAAGAAGTTCTTCCACTCAGCCC  697

seq1  TCCCAGAAAAGGAAAAATAAAGGGGTCTCTGAGCCATCACAACTACAGTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAAAAGGAAAAATAAAGGGGTCTCTGAGCCATCACAACTACAGTC  747

seq1  ACCACTGTCTCCTTTGCCCTAGGCAAAAGGTTAGCAATTCTGCCATAGGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTCTCCTTTGCCCTAGGCAAAAGGTTAGCAATTCTGCCATAGGG  797

seq1  GGCAGTAAGCATAGCAGCTGGGTCCCCAAACCCGGAGCAGATTCCCTAGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTAAGCATAGCAGCTGGGTCCCCAAACCCGGAGCAGATTCCCTAGC  847

seq1  CTTGGTTTCGCCTCCAATCTGAACAGAAACAAATACAGGGTCTACTTAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTCGCCTCCAATCTGAACAGAAACAAATACAGGGTCTACTTAGG  897

seq1  AATCAAAAGCAAAGTAAATGGCAATGTATTCTCCCCGTGTTAAGGACTAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAAGCAAAGTAAATGGCAATGTATTCTCCCCGTGTTAAGGACTAA  947

seq1  GGTTCCCACTAGAATTC  962
      |||||||||||||||||
seq2  GGTTCCCACTAGAATTC  964


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