BAC Information

Click to search

BAC

Clone NameB6Ng01-348M16
Chromosome9 (Build37)
Map Location 118,151,032 - 118,196,344
singlet/doubletdoublet
Overlap genenone
Upstream geneRbms3, LOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
Downstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348M16.bB6Ng01-348M16.g
ACCGA129974GA129975
length99625
definitionB6Ng01-348M16.b B6Ng01-348M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,151,032 - 118,151,130)(118,195,720 - 118,196,344)
sequence
cagatgttattgcccagtcctctgcaggaaactccactgtctcagcagaa
catactgtaaagactccttcccctcctccccctcctccccctcctcccc
gaattccacagaatgtattctggtcatatttgcttcctccttctcccctc
ccaggtcccccagatccttgcacctcctcatccctcccaacttgatttct
tctttccttgtttataacctaccaagttcaatttgtgcagctcgtattct
catggtagcagggccatccatggaacacggtttacctgccagaggcttaa
gaaaaccagccctcccttccccagaagccggatagggaagggccaagaag
tcaggaaagacaatatgaaatgtagacatgagactaggtactagaaaatt
acgagtagatatccacatatggatgttctaagagatgaaccaagcgccac
aagaacacagaaaacactacatgagagtaaaataaaatacaggtgcttaa
gtgtggaacacaccatccttcctggcagataggaggagctggctacaagg
ctagaaggataagctaggtttcatggtgtatgaatctttggtagatatct
ttggctagttattcattgatttaaaagtgtaaaaaataaaaataatactt
gaatgcagaatatcaagatagagtgtaggagagagaggaagggggaagag
aaagagagagagagaggagtgagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_118151032_118151130
seq2: B6Ng01-348M16.b_54_152

seq1  CAGATGTTATTGCCCAGTCCTCTGCAGGAAACTCCACTGTCTCAGCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTTATTGCCCAGTCCTCTGCAGGAAACTCCACTGTCTCAGCAGAA  50

seq1  CATACTGTAAAGACTCCTTCCCCTCCTCCCCCTCCTCCCCCTCCTCCCC  99
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGTAAAGACTCCTTCCCCTCCTCCCCCTCCTCCCCCTCCTCCCC  99

seq1: chr9_118195720_118196344
seq2: B6Ng01-348M16.g_67_691 (reverse)

seq1  AACTCACTCCTCTCTCTCTCTCTTTCTCTTCCCCCTTCCTCTCTCTCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTCCTCTCTCTCTCTCTTTCTCTTCCCCCTTCCTCTCTCTCCTA  50

seq1  CACTCTATCTTGATATTCTGCATTCAAGTATTATTTTTATTTTTTACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTATCTTGATATTCTGCATTCAAGTATTATTTTTATTTTTTACACT  100

seq1  TTTAAATCAATGAATAACTAGCCAAAGATATCTACCAAAGATTCATACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCAATGAATAACTAGCCAAAGATATCTACCAAAGATTCATACAC  150

seq1  CATGAAACCTAGCTTATCCTTCTAGCCTTGTAGCCAGCTCCTCCTATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAACCTAGCTTATCCTTCTAGCCTTGTAGCCAGCTCCTCCTATCTG  200

seq1  CCAGGAAGGATGGTGTGTTCCACACTTAAGCACCTGTATTTTATTTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAGGATGGTGTGTTCCACACTTAAGCACCTGTATTTTATTTTACT  250

seq1  CTCATGTAGTGTTTTCTGTGTTCTTGTGGCGCTTGGTTCATCTCTTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTAGTGTTTTCTGTGTTCTTGTGGCGCTTGGTTCATCTCTTAGAA  300

seq1  CATCCATATGTGGATATCTACTCGTAATTTTCTAGTACCTAGTCTCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATATGTGGATATCTACTCGTAATTTTCTAGTACCTAGTCTCATGT  350

seq1  CTACATTTCATATTGTCTTTCCTGACTTCTTGGCCCTTCCCTATCCGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTCATATTGTCTTTCCTGACTTCTTGGCCCTTCCCTATCCGGCT  400

seq1  TCTGGGGAAGGGAGGGCTGGTTTTCTTAAGCCTCTGGCAGGTAAACCGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGAAGGGAGGGCTGGTTTTCTTAAGCCTCTGGCAGGTAAACCGTG  450

seq1  TTCCATGGATGGCCCTGCTACCATGAGAATACGAGCTGCACAAATTGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGGATGGCCCTGCTACCATGAGAATACGAGCTGCACAAATTGAAC  500

seq1  TTGGTAGGTTATAAACAAGGAAAGAAGAAATCAAGTTGGGAGGGATGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGGTTATAAACAAGGAAAGAAGAAATCAAGTTGGGAGGGATGAGG  550

seq1  AGGTGCAAGGATCTGGGGGACCTGGGAGGGGAGAAGGAGGAAGCAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCAAGGATCTGGGGGACCTGGGAGGGGAGAAGGAGGAAGCAAATAT  600

seq1  GACCAGAATACATTCTGTGGAATTC  625
      |||||||||||||||||||||||||
seq2  GACCAGAATACATTCTGTGGAATTC  625