BAC Information

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BAC

Clone NameB6Ng01-348N13
Chromosome9 (Build37)
Map Location 64,889,039 - 65,048,121
singlet/doubletdoublet
Overlap geneDpp8, Nope, Punc
Upstream gene2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l, Megf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1
Downstream geneParp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348N13.bB6Ng01-348N13.g
ACCGA130014GA130015
length9641,171
definitionB6Ng01-348N13.b B6Ng01-348N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,047,162 - 65,048,121)(64,889,039 - 64,890,203)
sequence
accccttagtgcagaccgtaggagctggaaagatgtctggctacatctgt
ctacctttgtgagttgtccttttgtcctctctcctcctgttctttctgct
cctgaccagagcctgagtttgcctaagctccttagctagtgtttatgctc
cctcaaagctcccactccagccttgtagctgcctgtcctgctagcttact
gcctccactcccctcctccagggagctgcaagttttacagcttgcctgtc
tgccctggcactttttgcccggagcttctgtttgtgtcccttcttaaatt
ctattattaatgagactgaaaatcccaagaggagacatcaagttccctga
tggatgccccaagactaagatgacatttctttcctgtctttctttaatca
gagaacatgaacccgttcctgcacccctagataacgtcaaaagcacttgc
tgtcaagccttgtgacctgagttcgatccctggaacgcacacagtaaaag
aaaagaactgactcccacagttgacctctgacttccacatgtacaccacg
gcatgtgcactccactcacaataatatctggaaaaacgttaaagaggaca
gggtgctagagcggtggctcagcagttaagagcactaactgttcttgcag
aggacccaggttcagccctgatctggcagacagtttggcactgtcttctg
aattgaccttgtgggggtctacacatgcaagcacagtgagacacacgtat
agagagaaaggggaaggggagatcaattacagtttgtttgtttgtttgtt
tgtctgttttaatttgttttgagacagtgtttttctgcgtagctctggct
gtcctggaactcagagacccacctgcctctttctctcaagtgccaagatt
aaaaggtatgcacatcttttccatcactacctagtgagttgagtgagtgt
gtgtgtgtagtgtg
gaattccaaagatattgtttttacagtcacagaactttataatgaaaaaa
aaacaaaaaacaaaactagaattaacctgaacttatttgtttctcagtac
aacttaggtagttaggaaagagaagaaaatttcaaatccaaagtaacact
gaaatctcatctgttgctgagactaacaacaaccccccaaaaatgacagt
tgtctttcttatgttgtataatagttttgtcttgagatggactaagatct
gaatatcaaagttatctgagttaagtaagcttacgggtacttgctgctct
tccgcaggtccctggttcagttcatagaactcacattgtcaggttcatca
cacccatctgtaactcctgctccaggggatgtggcgccctcttctggtct
cattgaatacctacacatatgtggtgtacatttatgcatgctgtgcacac
caccgtaaacttttactgtcaggatgaaacctgagtgttttctgtgaaac
attggagagttgtttttatatttacttcttgcttagtttttgagacggag
tctcttcatctgcccaaattggctgccaactcacagtccattccagagag
ccgagattgtagatgtgggccctgacactgttagaaactttggcagtctt
gtttttcttactcaggttttttgttttgtttcattgttttttgttttttg
ttttttgtttttttttttttgttttgttttgttttgagacaaggtttcat
ttagcctaggctggcttcaaaatcctgattctcctgcctctacctcctga
gttgtggggttataggtgtttgctaccatgcctagcttaaaacattgttt
tttattcaaaggaaatttccacggcatgaagcatgtgtataccctacttt
aaataacatcattttgggttcctgtggaatgggaaaatataataattatg
tagaagacattattgttattttacgactgttgtaataaggaacaatatat
acaaaaattataatgaattttgttttgcttctttccttatagccatgtct
ggtgagaacagagaaaaatacactatttattctggaattccttaaatcat
tcaacagagcagcaagtctaatgctcctggagcccttggatcttcaaggt
agaacacagtatttctcttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_65047162_65048121
seq2: B6Ng01-348N13.b_56_1019 (reverse)

seq1  CACAC-ACACACACACACTCACTC-ACTCACTAGGTAGTGATGG-AAAGA  47
      ||||| |||||||||||||||||| ||||||||||||||||||| |||||
seq2  CACACTACACACACACACTCACTCAACTCACTAGGTAGTGATGGAAAAGA  50

seq1  TGGTGCATACC-TTTAATTCTGGCACTTGAGAGAAAGAGGCAGGTGGGTC  96
      | ||||||||| ||||||  ||||||||||||||||||||||||||||||
seq2  T-GTGCATACCTTTTAATCTTGGCACTTGAGAGAAAGAGGCAGGTGGGTC  99

seq1  TCTGAGTTCCAGGACAGCCAGAGCTACGCAGAAAAACACTGTCTCAAAAC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCCAGGACAGCCAGAGCTACGCAGAAAAACACTGTCTCAAAAC  149

seq1  AAATTAAAACAGACAAACAAACAAACAAACAAACTGTAATTGATCTCCCC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAACAGACAAACAAACAAACAAACAAACTGTAATTGATCTCCCC  199

seq1  TTCCCCTTTCTCTCTATACGTGTGTCTCACTGTGCTTGCATGTGTAGA-C  245
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTCCCCTTTCTCTCTATACGTGTGTCTCACTGTGCTTGCATGTGTAGACC  249

seq1  CCCACAAGGTCAATTCAGAAGACAGTGCCAAACTGTCTGCCAGATCAGGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAGGTCAATTCAGAAGACAGTGCCAAACTGTCTGCCAGATCAGGG  299

seq1  CTGAACCTGGGTCCTCTGCAAGAACAGTTAGTGCTCTTAACTGCTGAGCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCTGGGTCCTCTGCAAGAACAGTTAGTGCTCTTAACTGCTGAGCC  349

seq1  ACCGCTCTAGCACCCTGTCCTCTTTAACGTTTTTCCAGATATTATTGTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTCTAGCACCCTGTCCTCTTTAACGTTTTTCCAGATATTATTGTGA  399

seq1  GTGGAGTGCACATGCCGTGGTGTACATGTGGAAGTCAGAGGTCAACTGTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTGCACATGCCGTGGTGTACATGTGGAAGTCAGAGGTCAACTGTG  449

seq1  GGAGTCAGTTCTTTTCTTTTACTGTGTGCGTTCCAGGGATCGAACTCAGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAGTTCTTTTCTTTTACTGTGTGCGTTCCAGGGATCGAACTCAGG  499

seq1  TCACAAGGCTTGACAGCAAGTGCTTTTGACGTTATCTAGGGGTGCAGGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGGCTTGACAGCAAGTGCTTTTGACGTTATCTAGGGGTGCAGGAA  549

seq1  CGGGTTCATGTTCTCTGATTAAAGAAAGACAGGAAAGAAATGTCATCTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTCATGTTCTCTGATTAAAGAAAGACAGGAAAGAAATGTCATCTTA  599

seq1  GTCTTGGGGCATCCATCAGGGAACTTGATGTCTCCTCTTGGGATTTTCAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGGGCATCCATCAGGGAACTTGATGTCTCCTCTTGGGATTTTCAG  649

seq1  TCTCATTAATAATAGAATTTAAGAAGGGACACAAACAGAAGCTCCGGGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTAATAATAGAATTTAAGAAGGGACACAAACAGAAGCTCCGGGCA  699

seq1  AAAAGTGCCAGGGCAGACAGGCAAGCTGTAAAACTTGCAGCTCCCTGGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGCCAGGGCAGACAGGCAAGCTGTAAAACTTGCAGCTCCCTGGAG  749

seq1  GAGGGGAGTGGAGGCAGTAAGCTAGCAGGACAGGCAGCTACAAGGCTGGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAGTGGAGGCAGTAAGCTAGCAGGACAGGCAGCTACAAGGCTGGA  799

seq1  GTGGGAGCTTTGAGGGAGCATAAACACTAGCTAAGGAGCTTAGGCAAACT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGCTTTGAGGGAGCATAAACACTAGCTAAGGAGCTTAGGCAAACT  849

seq1  CAGGCTCTGGTCAGGAGCAGAAAGAACAGGAGGAGAGAGGACAAAAGGAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCTGGTCAGGAGCAGAAAGAACAGGAGGAGAGAGGACAAAAGGAC  899

seq1  AACTCACAAAGGTAGACAGATGTAGCCAGACATCTTTCCAGCTCCTACGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACAAAGGTAGACAGATGTAGCCAGACATCTTTCCAGCTCCTACGG  949

seq1  TCTGCACTAAGGGGT  960
      |||||||||||||||
seq2  TCTGCACTAAGGGGT  964

seq1: chr9_64889039_64890203
seq2: B6Ng01-348N13.g_65_1235

seq1  GAATTCCAAAGATATTGTTTTTACAGTCACAGAACTTTATAATGAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGATATTGTTTTTACAGTCACAGAACTTTATAATGAAAAAA  50

seq1  AAACAAAAAACAAAACTAGAATTAACCTGAACTTATTTGTTTCTCAGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAACAAAACTAGAATTAACCTGAACTTATTTGTTTCTCAGTAC  100

seq1  AACTTAGGTAGTTAGGAAAGAGAAGAAAATTTCAAATCCAAAGTAACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGGTAGTTAGGAAAGAGAAGAAAATTTCAAATCCAAAGTAACACT  150

seq1  GAAATCTCATCTGTTGCTGAGACTAACAACAACCCCCCAAAAATGACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTCATCTGTTGCTGAGACTAACAACAACCCCCCAAAAATGACAGT  200

seq1  TGTCTTTCTTATGTTGTATAATAGTTTTGTCTTGAGATGGACTAAGATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCTTATGTTGTATAATAGTTTTGTCTTGAGATGGACTAAGATCT  250

seq1  GAATATCAAAGTTATCTGAGTTAAGTAAGCTTACGGGTACTTGCTGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCAAAGTTATCTGAGTTAAGTAAGCTTACGGGTACTTGCTGCTCT  300

seq1  TCCGCAGGTCCCTGGTTCAGTTCATAGAACTCACATTGTCAGGTTCATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCAGGTCCCTGGTTCAGTTCATAGAACTCACATTGTCAGGTTCATCA  350

seq1  CACCCATCTGTAACTCCTGCTCCAGGGGATGTGGCGCCCTCTTCTGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATCTGTAACTCCTGCTCCAGGGGATGTGGCGCCCTCTTCTGGTCT  400

seq1  CATTGAATACCTACACATATGTGGTGTACATTTATGCATGCTGTGCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAATACCTACACATATGTGGTGTACATTTATGCATGCTGTGCACAC  450

seq1  CACCGTAAACTTTTACTGTCAGGATGAAACCTGAGTGTTTTCTGTGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTAAACTTTTACTGTCAGGATGAAACCTGAGTGTTTTCTGTGAAAC  500

seq1  ATTGGAGAGTTGTTTTTATATTTACTTCTTGCTTAGTTTTTGAGACGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGAGTTGTTTTTATATTTACTTCTTGCTTAGTTTTTGAGACGGAG  550

seq1  TCTCTTCATCTGCCCAAATTGGCTGCCAACTCACAGTCCATTCCAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCATCTGCCCAAATTGGCTGCCAACTCACAGTCCATTCCAGAGAG  600

seq1  CCGAGATTGTAGATGTGGGCCCTGACACTGTTAGAAACTTTGGCAGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGATTGTAGATGTGGGCCCTGACACTGTTAGAAACTTTGGCAGTCTT  650

seq1  GTTTTTCTTACTCAGGTTTTTTGTTTTGTTTCATTGTTTTTTGTTTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTTACTCAGGTTTTTTGTTTTGTTTCATTGTTTTTTGTTTTTTG  700

seq1  TTTTTTGTTTTTTTTTTTTTGTTTTGTTTTGTTTTGAGACAAGGTTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTTTTTTTTTTGTTTTGTTTTGTTTTGAGACAAGGTTTCAT  750

seq1  TTAGCCTAGGCTGGCTTCAAAATCCTGATTCTCCTGCCTCTACCTCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTAGGCTGGCTTCAAAATCCTGATTCTCCTGCCTCTACCTCCTGA  800

seq1  GTTGTGGGGTTATAGGTGTTTGCTACCATGCCTAGCTTAAAACATTG-TT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTTGTGGGGTTATAGGTGTTTGCTACCATGCCTAGCTTAAAACATTGTTT  850

seq1  TTTATTC-AAGGAAATTTCCACGGCATGAAGCATGTGTATACCCTACTT-  897
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTATTCAAAGGAAATTTCCACGGCATGAAGCATGTGTATACCCTACTTT  900

seq1  -AATAACATCATTTT-GGTTCCTGTGGAAT-GGAAAATATTATAA-TATG  943
       |||||||||||||| |||||||||||||| ||||||||| |||| ||||
seq2  AAATAACATCATTTTGGGTTCCTGTGGAATGGGAAAATATAATAATTATG  950

seq1  TAGAAGACATTA-TGT--ATTTACGACTGTTGTAATAAGG-ACAATAT-T  988
      |||||||||||| |||   ||||||||||||||||||||| ||||||| |
seq2  TAGAAGACATTATTGTTATTTTACGACTGTTGTAATAAGGAACAATATAT  1000

seq1  AC-AAAATAATAATGTATTTTTTGTTTTTGTTTTTTTCCTTATAGCCATG  1037
      || ||||| |||||| |||||    ||||| || ||||||||||||||||
seq2  ACAAAAATTATAATGAATTTT---GTTTTGCTTCTTTCCTTATAGCCATG  1047

seq1  TCTGGTGAGAACAGAG-AAAATACACTATTTTATTCTGAAATCCCTAAAA  1086
      |||||||||||||||| ||||||||||| ||||||||| ||| ||| |||
seq2  TCTGGTGAGAACAGAGAAAAATACACTA-TTTATTCTGGAATTCCTTAAA  1096

seq1  CCA-TCAACAGAGCAGC-AGTCTTAATGCTTTCCTGGAAGCCCCTTTTGG  1134
       || ||||||||||||| |||| ||||||  |||||| |||||   ||||
seq2  TCATTCAACAGAGCAGCAAGTC-TAATGC--TCCTGG-AGCCC---TTGG  1139

seq1  ATCTTTTTCAGGTAGGAACA-AGTAT---TCTTAG  1165
      |||  ||  ||||| ||||| |||||   ||||||
seq2  ATC--TTCAAGGTA-GAACACAGTATTTCTCTTAG  1171