BAC Information

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BAC

Clone NameB6Ng01-349B24
Chromosome9 (Build37)
Map Location 91,054,388 - 91,187,511
singlet/doubletdoublet
Overlap geneLOC621576
Upstream geneAdamts7, Tbc1d2b, LOC100039777, LOC100039925, EG434428
Downstream geneZic1, Zic4, LOC331000, Plscr1, Plscr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349B24.bB6Ng01-349B24.g
ACCGA130205GA130206
length1,048828
definitionB6Ng01-349B24.b B6Ng01-349B24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,186,443 - 91,187,511)(91,054,388 - 91,055,202)
sequence
gaattctttgtttagctctgagccccatattttaatggggttatttgatt
ttctggagtccaccttcttgagttctttctatatattggatattagtccc
atatctgatttaggataggtaaagatcctttcccaatatgttggtggtct
ttttgtcttattgatggtgtctattgccttgcagaagctttgcagtttta
tgaggtcccatttgtcaattctcaatcttacagcacaagccattagaagc
cattgctgttctgttcaggaatttttcctctgtgcccatatcttcgaggc
ttttccccactttctcctctataagtttcactgtctctggttttatatgg
agttccttgatccacttagatttgaccttagtacaaggagatagcagtgg
atcgattcgcattcttctacatgataactgccagttgtgccagcatttgt
tgaaaatgctgtcttttttccactggatggttttagctctcttgtcaaag
attccacacaactttatatataataaaaagtgggatgattatttgttgga
tgtttcactatttctcctctttgccatcctcctggttggtatctggccct
tgatgcaagaaggtctgtggcagtgataagagcaatcaaaagcaggttta
agtgaaaattggtcatggggtaaaacccaggtacagagaattgagggtgt
gagactgggcattgaaaaaaattgaacaatgttgcccttatttttctcag
tcttttcagaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccc
aaccaacctaccaaccaaccaaccaaccaaccaaccaaccaaccaactaa
ccaaccaaccaaccaactaacctaccaaccaaccaacctaccaacaacca
actaaccaccaacctacaacaccttcagacacacatcattgtcagtcaaa
taaacaatgatttttaaaagcccttcttttgtactttcataaatgtacag
ttcagcagagatatgagaattgcctctgggagattgaaacttcggaag

gaattcataggtcctggggaagagggagtcagttttcttttagaaaccat
tactactaagtcagctgaactccattggaagttcatacatccaagaatat
atgggcaacacaaattggacttgacatgtttggaagagagagaaagaatg
agagagagagagagagagagagagagagagagagagagagagagaggaga
gagagatttgtgtgggtatagaagctggcattgatatgggaaaagttata
gaaggacagtgactatgatcaaaacacatcatataaaattctcaaaacct
aataaatattataaaaactatacaatacctactgttgtcctctggaagcc
aaatgacttcaatcattattgatgctgaaactgaaaatccccagtaacta
acaaattgtatttatgtaaaaatacaatttggctataaatgaattcattc
aatatagttcagaaaaatacacaaaaatacaatttaattaatatttttat
aaccacacatacttttaaatgaataatatttagtttttatttttattgaa
aacagattttttatacagtatattcttgtaactattttcccctttcctaa
ctccttccactttatcctctcctatctggatccatacctttctgtttatc
agtagaaaataagcagacctcaagaaatagtaataaaatataataaaatg
aaatagtatgagaatagggacaaaacaaaagagtaagaaaacagatcaga
tgcaaagacacacattaagagtttgggccgtggtggcacacgtctttaat
tcccagcacttcggggaggtagaggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_91186443_91187511
seq2: B6Ng01-349B24.b_51_1094 (reverse)

seq1  CTTCTCGAAGTTTTCATTTCTCCCAAGAGGCCATATCTCAATATCTTCTT  50
      |||| ||||||||  |  |||||| |||||| || |||| ||||||   |
seq2  CTTC-CGAAGTTTCAA--TCTCCC-AGAGGCAAT-TCTC-ATATCT--CT  42

seq1  GCTGAACTGTACATTTTATTGAAAGTACAAAAGGAAAGGGCTTTTTTAAA  100
      ||||||||||||||||   ||||||||||||||  ||||||  |||||||
seq2  GCTGAACTGTACATTT--ATGAAAGTACAAAAG--AAGGGC--TTTTAAA  86

seq1  AATCATTTGTTTTATTTTGACTGACAAATGATGTGTGTCCTTGAAAGGTT  150
      ||||| ||||||   |||||||||| |||||||||||||  || ||||| 
seq2  AATCA-TTGTTT--ATTTGACTGAC-AATGATGTGTGTC--TG-AAGGT-  128

seq1  GGTTGGTAGGTTGGTTGGTTAGTTGGTTGGTTGGTAGGTTGGTTGGTTGG  200
       ||| ||||||||| ||||||||||||| |||||||||||||||||||||
seq2  -GTT-GTAGGTTGG-TGGTTAGTTGGTT-GTTGGTAGGTTGGTTGGTTGG  174

seq1  TAGGTTAGTTGGTTGGTTGGTTGGTTAGTTGGTTGGTTGGTTGGTTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTAGTTGGTTGGTTGGTTGGTTAGTTGGTTGGTTGGTTGGTTGGTT  224

seq1  GGTTGGTTGGTTGGTAGGTTGGTT-GGTTGGTTGGTTGGTTGGTTGGTTG  299
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGTTGGTTGGTTGGTAGGTTGGTTGGGTTGGTTGGTTGGTTGGTTGGTTG  274

seq1  GTTGGTTGGTTGGTTCTGAAAAGACTGAGAAAAATAAGGGCAACATTGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTGGTTGGTTCTGAAAAGACTGAGAAAAATAAGGGCAACATTGTT  324

seq1  CAATTTTTTTCAATGCCCAGTCTCACACCCTCAATTCTCTGTACCTGGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTTTCAATGCCCAGTCTCACACCCTCAATTCTCTGTACCTGGGT  374

seq1  TTTACCCCATGACCAATTTTCACTTAAACCTGCTTTTGATTGCTCTTATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCCATGACCAATTTTCACTTAAACCTGCTTTTGATTGCTCTTATC  424

seq1  ACTGCCACAGACCTTCTTGCATCAAGGGCCAGATACCAACCAGGAGGATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCACAGACCTTCTTGCATCAAGGGCCAGATACCAACCAGGAGGATG  474

seq1  GCAAAGAGGAGAAATAGTGAAACATCCAACAAATAATCATCCCACTTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAGGAGAAATAGTGAAACATCCAACAAATAATCATCCCACTTTTT  524

seq1  ATTATATATAAAGTTGTGTGGAATCTTTGACAAGAGAGCTAAAACCATCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATATAAAGTTGTGTGGAATCTTTGACAAGAGAGCTAAAACCATCC  574

seq1  AGTGGAAAAAAGACAGCATTTTCAACAAATGCTGGCACAACTGGCAGTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAAAAAGACAGCATTTTCAACAAATGCTGGCACAACTGGCAGTTA  624

seq1  TCATGTAGAAGAATGCGAATCGATCCACTGCTATCTCCTTGTACTAAGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAGAAGAATGCGAATCGATCCACTGCTATCTCCTTGTACTAAGGT  674

seq1  CAAATCTAAGTGGATCAAGGAACTCCATATAAAACCAGAGACAGTGAAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTAAGTGGATCAAGGAACTCCATATAAAACCAGAGACAGTGAAAC  724

seq1  TTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCACAGAGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCACAGAGGAA  774

seq1  AAATTCCTGAACAGAACAGCAATGGCTTCTAATGGCTTGTGCTGTAAGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTGAACAGAACAGCAATGGCTTCTAATGGCTTGTGCTGTAAGAT  824

seq1  TGAGAATTGACAAATGGGACCTCATAAAACTGCAAAGCTTCTGCAAGGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTGACAAATGGGACCTCATAAAACTGCAAAGCTTCTGCAAGGCA  874

seq1  ATAGACACCATCAATAAGACAAAAAGACCACCAACATATTGGGAAAGGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACACCATCAATAAGACAAAAAGACCACCAACATATTGGGAAAGGAT  924

seq1  CTTTACCTATCCTAAATCAGATATGGGACTAATATCCAATATATAGAAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCTATCCTAAATCAGATATGGGACTAATATCCAATATATAGAAAG  974

seq1  AACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAATATGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAATATGG  1024

seq1  GGCTCAGAGCTAAACAAAGA  1069
      ||||||||||||||||||||
seq2  GGCTCAGAGCTAAACAAAGA  1044


seq1: chr9_91054388_91055202
seq2: B6Ng01-349B24.g_65_892

seq1  GAATTCATAGGTCCTGGGGAAGAGGGAGTCAGTTTTCTTTTAGAAACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGTCCTGGGGAAGAGGGAGTCAGTTTTCTTTTAGAAACCAT  50

seq1  TACTACTAAGTCAGCTGAACTCCATTGGAAGTTCATACATCCAAGAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTAAGTCAGCTGAACTCCATTGGAAGTTCATACATCCAAGAATAT  100

seq1  ATGGGCAACACAAATTGGACTTGACATGTTTGGAAGAGAGAGAAAGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAACACAAATTGGACTTGACATGTTTGGAAGAGAGAGAAAGAATG  150

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGA  200

seq1  GAGAGATTTGTGTGGGTATAGAAGCTGGCATTGATATGGGAAAAGTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATTTGTGTGGGTATAGAAGCTGGCATTGATATGGGAAAAGTTATA  250

seq1  GAAGGACAGTGACTATGATCAAAACACATCATATAAAATTCTCAAAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACAGTGACTATGATCAAAACACATCATATAAAATTCTCAAAACCT  300

seq1  AATAAATATTATAAAAACTATACAATACCTACTGTTGTCCTCTGGAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATTATAAAAACTATACAATACCTACTGTTGTCCTCTGGAAGCC  350

seq1  AAATGACTTCAATCATTATTGATGCTGAAACTGAAAATCCCCAGTAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTTCAATCATTATTGATGCTGAAACTGAAAATCCCCAGTAACTA  400

seq1  ACAAATTGTATTTATGTAAAAATACAATTTGGCTATAAATGAATTCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTGTATTTATGTAAAAATACAATTTGGCTATAAATGAATTCATTC  450

seq1  AATATAGTTCAGAAAAATACACAAAAATACAATTTAATTAATATTTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGTTCAGAAAAATACACAAAAATACAATTTAATTAATATTTTTAT  500

seq1  AACCACACATACTTTTAAATGAATAATATTTAGTTTTTATTTTTATTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACATACTTTTAAATGAATAATATTTAGTTTTTATTTTTATTGAA  550

seq1  AACAGATTTTTTATACAGTATATTCTTGTAACTA-TTTCCCCTTTCCTAA  599
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AACAGATTTTTTATACAGTATATTCTTGTAACTATTTTCCCCTTTCCTAA  600

seq1  CTCCTTCCACTTTATCCTCTCCTATCTGGATCCATACCTTTCTGTTTATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCACTTTATCCTCTCCTATCTGGATCCATACCTTTCTGTTTATC  650

seq1  AGTAGAAAATAAGCAGACCTCAAAGAAATAGTAATAAAATATAATAAAAT  699
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTAGAAAATAAGCAGACCTC-AAGAAATAGTAATAAAATATAATAAAAT  699

seq1  GAAATAGTATGAGAATA-GGACAAAACAAAAGAGTAAG-AAACAGATCAG  747
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  GAAATAGTATGAGAATAGGGACAAAACAAAAGAGTAAGAAAACAGATCAG  749

seq1  ATGCAAAGACACACATTAAGAGTT--GGGCGTGGTGGCACACGCCTTTAA  795
      ||||||||||||||||||||||||  || |||||||||||||| ||||||
seq2  ATGCAAAGACACACATTAAGAGTTTGGGCCGTGGTGGCACACGTCTTTAA  799

seq1  -TCCCAGCAC-TCGG-------GAGGCAG  815
       ||||||||| ||||       |||||||
seq2  TTCCCAGCACTTCGGGGAGGTAGAGGCAG  828


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