BAC Information

Click to search

BAC

Clone NameB6Ng01-349E15
Chromosome10 (Build37)9 (Build37)
Map Location 4,165,821 - 4,166,30887,518,899 - 87,520,053
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCnksr3, Oprm1, A130090K04Rik, LOC237252, LOC100041224
Downstream geneRgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1, Syne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349E15.bB6Ng01-349E15.g
ACCGA130323GA130324
length1,1871,162
definitionB6Ng01-349E15.b B6Ng01-349E15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,165,821 - 4,166,308)(87,518,899 - 87,520,053)
sequence
gaattctttgtttagctctgtctcccatgttttaatagggttatttggtt
ttctggagtctaacttcttgagttctttatatatattggatattatcact
ctatcggatttaggactggtaaagatcttttcccaatctgttggttgcct
ttttgtcttattgacagtgtcctttactttacagaaactttgcaatttta
tgaggtcccatttgtcaattcttggtattacagcacaagccattggtgtt
ctgttcaggtttttttccccagtgccaatatcttcaaggctctcccccac
tttctcctctataagttttagtgtctctggttttatgtggaagttcttga
tccacttggacttgagttctgtacaaggagataagaatggagcaatttgc
attcttttacatggtaaccaacagttgagccagcaccatttgttaaaaat
gttgtctttttcccactggattgttttagctcctttgtcaaagatcagcc
ataggtctgtgggtttatttctgggtcttctattttattccattgatcta
cctgtttgtcactgtacccaataccatgcagtttttatcacaattgctct
gtagtataccttgcattcagggatggtgatttcatcagttcttttactgt
tgagaatagtttttgctctcctaggttttttgttattccagatgaatttg
caaattgctctatccatctgtgaagaattaagttggaattttgatgggta
ttgcattgaatctgtagattgctttcagcaagatggccatttttactata
ttaatcctgtcaatccatgagcatgggagatctttccatcatctgagatc
ttagaattattttttcagagacttgaatttttaatcatacagatctttca
cttccttagttagagtcacaccaaggtattttatattatttgtgactatt
atgaaggatcttgtttcttaatttctttctcagcctgtttattctttgtg
tagagaaaggctactgattgtttgagtattttacatcatctactttgcta
cagttggttatcagcatcagagtgtactctgtggcatttttgggtcacca
aaatgttgtattcatatcatatgtaataggaatttcacttttcttcattg
attccttaatctcttgtgctaattgctctggctagga

gaattctacatctctcagatgattggagtatcacacaggcagtctttggc
atgatggagagcaatgcatagctaacgaaaaagagaaaaccagaaagact
gacgttcgccttttaatcagttgaggctgaaagcataatcaatggcacaa
atcaaaaagaactctcttgagtaggtttgggacgatctatattccaacaa
tctatctcccaagccctataagtttgcatctggcagaaactgaacaatgg
aatttctgtacagtttaccataatgtccatttcaccacagatcctgcttg
ctcaacttagatagctatagatactttttgttgttgttatttgtctatgc
ttggggaggaaggtatttttcacatcaaaaatcatcccaaagctaggagg
aatgactatacagacatggatgtttgggtataaaattcactccactctaa
aaccaagtcttttttaattaattaattaattaattaattaatatcttctc
tcatatattacatcccaatgactttcccctctctcctcccagtccctcaa
caactcccaagccccctacatccatctccatttcccttcagaaaagggca
agccttccagggatatcaatcctacacaacataacaagttacaagactag
gcacatcccctcatatcaaggctagacaaggcaacccaaaagcgggaaaa
gagtcagagacagagtcctgctgccactattaggagtcccacaagaacag
cgagctagaacactacaacatatactcagaagtcctaagtcagacacata
taggctctatatgattgctgctccagtctctgtgagccagtataaacctc
ggttagttgattctataggctgtgttcttatggtgttcttgatccttctg
ggttcttacaatccttcctcctccttttctaggatccccaagctctgcct
aacggaaccaagcttttccattcaatacttcaaagaccctcacacagttg
ccttagtatcagtgacttatttcacatatacatctgactgttggaatagc
tacagtcacaagaacaaaagctctgatctacaaagactcaacttagtgca
ccccgaacaattgttttagattggaggccaccaagcagggtgctaattct
cagtggcaaacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_4165821_4166308
seq2: B6Ng01-349E15.b_777_1233 (reverse)

seq1  TCCTAGCCAGAGCAATTAGACCAAGAAAAAAAAAAAAGGAGATCAAGGGG  50
      |||||||||||||||||||  ||||     | |  ||||| ||||| |  
seq2  TCCTAGCCAGAGCAATTAGCACAAG-----AGATTAAGGA-ATCAATG--  42

seq1  ATACAAATTGGAAAAGATGAAGTAAAAATATCACTTTTTGCAGATGATAT  100
                   ||||  |||| ||| |    | | || || |||||||
seq2  -------------AAGA-AAAGTGAAATT----CCTATTACATATGATAT  74

seq1  G-ATAGTATATATAAGTGACCCTAAAAATTTCACCAGAGAACTC-CTAAA  148
      | |||  | || |  ||||||| ||||||  || ||||| || | || | 
seq2  GAATACAACATTTTGGTGACCC-AAAAATGCCA-CAGAGTACACTCTGAT  122

seq1  CCTAATAAACAACTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAACA  198
       || |||| |||||  ||  |||||| | ||| ||||||  |||||||||
seq2  GCTGATAACCAACTGTAGCAAAGTAGAT-GATGTAAAAT--ACTCAAACA  169

seq1  AGTCAATGGCTTTTCTCTACACAAAGGATAAACAGGCTGAGAAAGAAATT  248
      | ||| | || ||||||||||||||| |||||||||||||||||||||||
seq2  A-TCAGTAGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATT  218

seq1  AGAGAAACAACACCCTTCACAAGAGTCATAAATAATATAAAATACCTTGG  298
      | |||||||| | |||||| || ||||| |||||||||||||||||||||
seq2  A-AGAAACAAGATCCTTCATAATAGTCACAAATAATATAAAATACCTTGG  267

seq1  TGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAAATTCAAGT  348
      ||||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  TGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATTAAAAATTCAAGT  317

seq1  CTCTGAAGAAAGAAATTAAAGATCTCAGAAGATGAAAAGAACTCCCATGC  398
      ||||||| ||| || |  ||||||||||| |||| ||||| |||||||||
seq2  CTCTGAAAAAATAATTCTAAGATCTCAGATGATGGAAAGATCTCCCATGC  367

seq1  TCATGGATTGGCAGGATCAATATAGTAAAAATGGCTATCTTGCCAAAAGC  448
      |||||||||| |||||| ||||||||||||||||| |||||||  |||||
seq2  TCATGGATTGACAGGATTAATATAGTAAAAATGGCCATCTTGCTGAAAGC  417

seq1  AATCTACAGATTCAATACAATCCCCATCAAAATTCCAACT  488
      |||||||||||||||| |||| ||||||||||||||||||
seq2  AATCTACAGATTCAATGCAATACCCATCAAAATTCCAACT  457


seq1: chr9_87518899_87520053
seq2: B6Ng01-349E15.g_66_1227

seq1  GAATTCTACATCTCTCAGATGATTGGAGTATCACACAGGCAGTCTTTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATCTCTCAGATGATTGGAGTATCACACAGGCAGTCTTTGGC  50

seq1  ATGATGGAGAGCAATGCATAGCTAACGAAAAAGAGAAAACCAGAAAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGAGAGCAATGCATAGCTAACGAAAAAGAGAAAACCAGAAAGACT  100

seq1  GACGTTCGCCTTTTAATCAGTTGAGGCTGAAAGCATAATCAATGGCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTTCGCCTTTTAATCAGTTGAGGCTGAAAGCATAATCAATGGCACAA  150

seq1  ATCAAAAAGAACTCTCTTGAGTAGGTTTGGGACGATCTATATTCCAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAAGAACTCTCTTGAGTAGGTTTGGGACGATCTATATTCCAACAA  200

seq1  TCTATCTCCCAAGCCCTATAAGTTTGCATCTGGCAGAAACTGAACAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTCCCAAGCCCTATAAGTTTGCATCTGGCAGAAACTGAACAATGG  250

seq1  AATTTCTGTACAGTTTACCATAATGTCCATTTCACCACAGATCCTGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGTACAGTTTACCATAATGTCCATTTCACCACAGATCCTGCTTG  300

seq1  CTCAACTTAGATAGCTATAGATACTTTTTGTTGTTGTTATTTGTCTATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTTAGATAGCTATAGATACTTTTTGTTGTTGTTATTTGTCTATGC  350

seq1  TTGGGGAGGAAGGTATTTTTCACATCAAAAATCATCCCAAAGCTAGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGGAAGGTATTTTTCACATCAAAAATCATCCCAAAGCTAGGAGG  400

seq1  AATGACTATACAGACATGGATGTTTGGGTATAAAATTCACTCCACTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTATACAGACATGGATGTTTGGGTATAAAATTCACTCCACTCTAA  450

seq1  AACCAAGTCTTTTTTAATTAATTAATTAATTAATTAATTAATATCTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGTCTTTTTTAATTAATTAATTAATTAATTAATTAATATCTTCTC  500

seq1  TCATATATTACATCCCAATGACTTTCCCCTCTCTCCTCCCAGTCCCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATTACATCCCAATGACTTTCCCCTCTCTCCTCCCAGTCCCTCAA  550

seq1  CAACTCCCAAGCCCCCTACATCCATCTCCATTTCCCTTCAGAAAAGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCCAAGCCCCCTACATCCATCTCCATTTCCCTTCAGAAAAGGGCA  600

seq1  AGCCTTCCAGGGATATCAATCCTACACAACATAACAAGTTACAAGACTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCAGGGATATCAATCCTACACAACATAACAAGTTACAAGACTAG  650

seq1  GCACATCCCCTCATATCAAGGCTAGACAAGGCAACCCAAAAGCGGGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCCCCTCATATCAAGGCTAGACAAGGCAACCCAAAAGCGGGAAAA  700

seq1  GAGTCAGAGACAGAGTCCTGCTGCCACTATTAGGAGTCCCACAAGAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGAGACAGAGTCCTGCTGCCACTATTAGGAGTCCCACAAGAACAG  750

seq1  CGAGCTAGAACACTACAACATATACTCAGAAGTCCTAAGTCAGACACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTAGAACACTACAACATATACTCAGAAGTCCTAAGTCAGACACATA  800

seq1  TAGGCTCTATATGATTGCTGCTCCAGTCTCTGTGAGCCAGTATAAACCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCTATATGATTGCTGCTCCAGTCTCTGTGAGCCAGTATAAACCTC  850

seq1  GGTTAGTTGATTCTATAGGCTGTGTTCTTATGGTGTTCTTGATCCTTCT-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTTAGTTGATTCTATAGGCTGTGTTCTTATGGTGTTCTTGATCCTTCTG  900

seq1  GGTTCTTACAATCCTTCCTCCTCCTTTTCTAGGATCCCCAAGCTCTGCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTACAATCCTTCCTCCTCCTTTTCTAGGATCCCCAAGCTCTGCCT  950

seq1  AACGGAACCAAGCTTTTCCATTCAATACTTCAAAAGACCCTCACACAGTT  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACGGAACCAAGCTTTTCCATTCAATACTTC-AAAGACCCTCACACAGTT  999

seq1  GCCTTAGTATCAGTGAC-TATTTCACATATACATCTTGACTGTTGG-ATA  1047
      ||||||||||||||||| ||||||||||||||||| |||||||||| |||
seq2  GCCTTAGTATCAGTGACTTATTTCACATATACATC-TGACTGTTGGAATA  1048

seq1  GCTACAGTC-CACAGACAAAAGCTCTGATCTAC-AAGACTCAAC-TAGTG  1094
      ||||||||| ||   |||||||||||||||||| |||||||||| |||| 
seq2  GCTACAGTCACAAGAACAAAAGCTCTGATCTACAAAGACTCAACTTAGT-  1097

seq1  GCACCCCGAACAAT--GTTTAGATT-GAGGCCACCAAGCA-GGTGCTAAT  1140
      ||||||||||||||   |||||||| |||||||||||||| |||||||||
seq2  GCACCCCGAACAATTGTTTTAGATTGGAGGCCACCAAGCAGGGTGCTAAT  1147

seq1  TCTCAGTTGCAAACG  1155
      ||||||| |||||||
seq2  TCTCAGTGGCAAACG  1162


| Home | SequenceCutter | Blast | Download |