BAC Information

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BAC

Clone NameB6Ng01-349I09
Chromosome9 (Build37)
Map Location 36,487,986 - 36,554,133
singlet/doubletdoublet
Overlap geneAcrv1, Chek1, Stt3a
Upstream geneD730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik
Downstream geneEi24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349I09.bB6Ng01-349I09.g
ACCGA130492GA130493
length1,0821,082
definitionB6Ng01-349I09.b B6Ng01-349I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,487,986 - 36,489,073)(36,553,038 - 36,554,133)
sequence
gaattccagtccaacctatgttatactgagaaaccctgtttcgaaaacta
tttttttctactgttataataataacaataaacctgcaaataaagaagat
ataaagattgttccataatggaaatcgataaaaatattagataaaagtgt
gctatagaaagatggtgggggaaaatatatagggttataattaagttggt
tgtaatataaaggttactaaattttttcaggtcgggattcaatatcctac
gatgaaattaatgcttgattctctgtttgcaatgttatcttaagtgtcta
tctgttcttagtaagaggacagagttagccagagtcaagctgacttcttg
acaggctgcaaactgacactatggaagatcaagcataagtttttgtttcc
caggactggaaaagtcccagtcaattcccggaaaaaaccacccctgacag
cagccaatcggaagcagccaatccggagctgtagaagctgccccaccacc
taacctgagccaaataaagctattcatcaaaagtccccaaccaattaacc
aatcactaaagcacctatacccctatacccctggagattgagctgtccaa
tcaagggaaagaaaggtaaaattcgcccactcctaccaggcattaattga
ccagaataactgctctttgttgttgcatactagcgtcatcctttgcatat
cgtggacccttacttacattagtaaaaatgtgacacttaaaccctatgat
tagatttcattttatggcttcccattagagtaagtctttgcctgttgcat
agtcattgtcttacccacttaaaaaaattatatttatggaattttcccta
tttggaacgctccctactacattgtatggtcattgtgaacaatgtttaca
tgttcatgaatgcagcctattattcaagaaagtacactatatactgtcca
aatcaattaaactttactttctcctatgatttaaccctttgggatgcatc
cagtgtatctcttaagtacgtacttgtacatttagcttataaaaactttg
taggtgatagtgtccgcagccatgccataccc
gaattcctcagttttatcaaaactttatccctgacttgggggtcttttct
tttccttttgtctggctgaactagaaaaaaaaatattgaagattatgcaa
agctccttacagttgttaacccttttttggaatgcaaagagactcatatt
ctgtttgtggcgactaattttcttgggctcataatcttgtgttaggaact
tcattgaatttggagcagattaaagaaagacatttgcatggaactgctgt
tacaagcagtagtgagccacctgatgtggatgctgcacaccatactcagg
ctgttccccagaagagtgggaagagtaagcactaaacctctggggtggac
tttattatcttaaagccttgagtatattttctcctgctttgttgttaagg
cacagaagattttatgtaacgttatgatatatcttatctacttcaaaata
gttttttatttttatgtgtattaattaatgttttgtcttatgctgtgtct
gtgtactgtgtgcatatttggcaccttttgaggtcataataggttgttgg
atcccctggatgatctgagttattgacagatatgagctgccctgaggggt
ctatgaattgaacccaggtcctctagaaggatagtgcttctaaactctgg
accgtctctccatccttttctttttgtttataaatatatatttgaaggat
ataaacaacagtaaaaatgtattttagctgaggttggtggtatagacttg
tggtcccaacacgtgggaagttgaatcatatgttcaaggatggtctagga
aatgtagaaactctctatcttgaaaaagaaaatgcacaaagataagttgg
ttttttttttttgtttttttgttttttttggttatttggttttttgtttt
ttgctttttcgagacagggtttctctgtgtagccctggctgttctggaac
tcacttgtgaccaggctggcctcgactcaaaatctgcctgcctctgcctc
tgcttccgagtgctgggattaaggcgtgcacacacgctggaagcagtcag
cttcttagccattgaaccttctctccagcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_36487986_36489073
seq2: B6Ng01-349I09.b_41_1122

seq1  GAATTCCAGTACAACCAAGGCTATACAGAGAAACCCTGTTTCAAAAAACT  50
      |||||||||| ||||| | | ||||| |||||||||||||||  ||||||
seq2  GAATTCCAGTCCAACCTATGTTATACTGAGAAACCCTGTTTC-GAAAACT  49

seq1  ATTTTTTTCTACTGTTATAATAATAACAATAAACCATCAAATAAAGAAGA  100
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  ATTTTTTTCTACTGTTATAATAATAACAATAAACCTGCAAATAAAGAAGA  99

seq1  TATAAAGATTGTTCCATAATGGAAATCGATAAAAATATTAGATAAAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGATTGTTCCATAATGGAAATCGATAAAAATATTAGATAAAAGTG  149

seq1  TGCTATAGAAAGATGGTGGGGGAAAATAGATAGGGTTATAATTAAGTTGG  200
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGCTATAGAAAGATGGTGGGGGAAAATATATAGGGTTATAATTAAGTTGG  199

seq1  TTGTAATATAAAGGTTACTAAATTTTTTCAAGTCAAGATTCAATATCCTA  250
      |||||||||||||||||||||||||||||| |||  ||||||||||||||
seq2  TTGTAATATAAAGGTTACTAAATTTTTTCAGGTCGGGATTCAATATCCTA  249

seq1  GGATGAAATTAATGCTTGATTCTCTGTTTACAATGTTATCTTAAGTGTCG  300
       |||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  CGATGAAATTAATGCTTGATTCTCTGTTTGCAATGTTATCTTAAGTGTCT  299

seq1  ATCTGTTCTTAGTAAGAGGACAGAGTTAGCCAGAGTCAAGCTGACTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTCTTAGTAAGAGGACAGAGTTAGCCAGAGTCAAGCTGACTTCTT  349

seq1  GACAGGCTGCAAACTGGCAGTATGGAAGATCAGGCATAAGTTTTTGTTTC  400
      |||||||||||||||| || |||||||||||| |||||||||||||||||
seq2  GACAGGCTGCAAACTGACACTATGGAAGATCAAGCATAAGTTTTTGTTTC  399

seq1  CCAGGACTGGAAAAGTCCCAGTCAATTCCCGGAAAAAACCACCCCTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTGGAAAAGTCCCAGTCAATTCCCGGAAAAAACCACCCCTGACA  449

seq1  GCAGCCAATCAGGAAGCAGCCAATCCGGAGCTGTAGAAGCTGCCCCACCA  500
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAATC-GGAAGCAGCCAATCCGGAGCTGTAGAAGCTGCCCCACCA  498

seq1  CCTAACCTGAGCCAAATAAAGCTATTCAGCAAAAGTCCCCAACCAATTAA  550
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCTAACCTGAGCCAAATAAAGCTATTCATCAAAAGTCCCCAACCAATTAA  548

seq1  CCAATCACTAAAGCACCTATACCCCTATACCCCTGGAGATTGAGCTGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCACTAAAGCACCTATACCCCTATACCCCTGGAGATTGAGCTGTCC  598

seq1  AATCAAGGGAAAGAAAGGTAAAATTCGCCCACTCCTACCAGGCATTAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATCAAGGGAAAGAAAGGTAAAATTCGCCCACTCCTACCAGGCATTAATT  648

seq1  GACCAGAATAACTGCTCTTTGTTGTTGCATACTAGCGTCATCCTTTGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAATAACTGCTCTTTGTTGTTGCATACTAGCGTCATCCTTTGCAT  698

seq1  ATCGTGGACCCTTACTTACATTAGTAAAAATGGGACACTTAAACCCTATG  750
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATCGTGGACCCTTACTTACATTAGTAAAAATGTGACACTTAAACCCTATG  748

seq1  ATTAGATTTCATTTTATGTTTTCCCATTAGAGTAAGTCTTTGCCTGTTGC  800
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  ATTAGATTTCATTTTATGGCTTCCCATTAGAGTAAGTCTTTGCCTGTTGC  798

seq1  ATAGTCATTGTCTTACCCACAGAAAAAAATTATATTTATGGAATTATTCC  850
      ||||||||||||||||||||  ||||||||||||||||||||||| | ||
seq2  ATAGTCATTGTCTTACCCACTTAAAAAAATTATATTTATGGAATTTTCCC  848

seq1  TATTTGGAACGCT-CCTACTAAATTGTATGGTAATTGTGAACAAATATTT  899
      ||||||||||||| ||||||| |||||||||| ||||||||| ||| |||
seq2  TATTTGGAACGCTCCCTACTACATTGTATGGTCATTGTGAAC-AATGTTT  897

seq1  AAATGTTCATAAATTCGGCCTATTATT-AAGAAATAACACTAATAAACTG  948
      | |||||||| ||| | |||||||||| ||||||  ||||| ||| ||||
seq2  ACATGTTCATGAATGCAGCCTATTATTCAAGAAAGTACACT-ATATACTG  946

seq1  TCAAAATCAATTAAAACTTTAACTTTCTCCTATGATTTAACCCTTTTGGA  998
      || ||||||||| ||||||| |||||||||||||||||||||| ||||| 
seq2  TCCAAATCAATT-AAACTTT-ACTTTCTCCTATGATTTAACCC-TTTGGG  993

seq1  AGGCATCCAGTGTATCTTCATAAAGTAAGTACTTG-ACATTTTAGTTTTT  1047
      | |||||||||||||||   | ||||| ||||||| ||| ||||| || |
seq2  ATGCATCCAGTGTATCT--CTTAAGTACGTACTTGTACA-TTTAGCTTAT  1040

seq1  AAAAACTTTGTAGGTAAAAGTGTTGGGAGCCATGCCA-ACCC  1088
      ||||||||||||||| | |||||  | |||||||||| ||||
seq2  AAAAACTTTGTAGGTGATAGTGTCCGCAGCCATGCCATACCC  1082

seq1: chr9_36553038_36554133
seq2: B6Ng01-349I09.g_64_1145 (reverse)

seq1  GGGGCTGGAGAGAAGGGTCAGTGGTTAAGAAGACTGACTGCTCCAGGCGT  50
      |||||||||||||||| ||| ||| ||||||| ||||||||| |  ||||
seq2  GGGGCTGGAGAGAAGGTTCAATGGCTAAGAAG-CTGACTGCTTCCAGCGT  49

seq1  GGTGGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGAGGCAG  100
      |   ||||||||| ||||||||||||||| ||| ||||||||||||||||
seq2  G--TGTGCACGCC-TTAATCCCAGCACTC-GGAAGCAGAGGCAGAGGCAG  95

seq1  GCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGAA  150
      |||||||| |||| ||||||||||||||||| || |||||||||||||||
seq2  GCAGATTT-TGAG-TCGAGGCCAGCCTGGTC-AC-AAGTGAGTTCCAGAA  141

seq1  CAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAACAAAAAAACAA  200
      |||||||||||||||||||||||||||||||| ||||| |||||||   |
seq2  CAGCCAGGGCTACACAGAGAAACCCTGTCTCG-AAAAAGCAAAAAA--CA  188

seq1  AAAAACAAAAAAACAAAAAAAAACAAAAAAACAAAAAAAAAAAAACCAAC  250
      |||||| ||| ||| ||||||||||||||||| |||||||||||||||||
seq2  AAAAACCAAATAACCAAAAAAAACAAAAAAAC-AAAAAAAAAAAACCAAC  237

seq1  TTATCTTTGTGCATTTTCTTTTTCAAGATAGAGAGTTTCTACATTTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTGTGCATTTTCTTTTTCAAGATAGAGAGTTTCTACATTTCCTA  287

seq1  GACCATCCTTGAACATATGATTCAACTTCCCACGTGTTGGGACCACAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCCTTGAACATATGATTCAACTTCCCACGTGTTGGGACCACAAGT  337

seq1  CTATACCACCAACCTCAGCTAAAATACATTTTTACTGTTGTTTATAACCT  400
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTATACCACCAACCTCAGCTAAAATACATTTTTACTGTTGTTTATATCCT  387

seq1  TTAAATATATATTTATAAACAAAAAGAAAAGGCTGGAGAGATGGTCCAGT  450
      | |||||||||||||||||||||||||||||| |||||||| ||||||| 
seq2  TCAAATATATATTTATAAACAAAAAGAAAAGGATGGAGAGACGGTCCAGA  437

seq1  GCTTAGAAGCACTACCCTTCTAGAGGACCTGGGTTCAATTCCTAGAACCC  500
      | |||||||||||| |||||||||||||||||||||||||| |||| |||
seq2  GTTTAGAAGCACTATCCTTCTAGAGGACCTGGGTTCAATTCATAGACCCC  487

seq1  ACAGGGCAGCTCATATCTGTCAATAACTCAGATCATCCAGGGGATCCAAC  550
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCAGCTCATATCTGTCAATAACTCAGATCATCCAGGGGATCCAAC  537

seq1  AACCTCTTCTGACCTCAAAAGGTGCCAAATATGCACACAGTACACAGACA  600
      ||||| || |||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATTATGACCTCAAAAGGTGCCAAATATGCACACAGTACACAGACA  587

seq1  CACACTAAGACAAAACACTAATTAATACACATAAAAATAAAAAACTATTC  650
      ||   |||||||||||| ||||||||||||||||||||||||||||||| 
seq2  CAGCATAAGACAAAACATTAATTAATACACATAAAAATAAAAAACTATTT  637

seq1  TGAAGTAGATAAGATATATCATAACGTTACATAAAATCTTCTCTGCCTTA  700
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAAGTAGATAAGATATATCATAACGTTACATAAAATCTTCTGTGCCTTA  687

seq1  ACAACAAAGCAGGAGAAAATATACTCAAGGCTTTAAGATACTAAAGTCCA  750
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACAACAAAGCAGGAGAAAATATACTCAAGGCTTTAAGATAATAAAGTCCA  737

seq1  CCCCAGAGGCTTAGTGCTTACTCTTCCCACTCTTCTGGGGAACAGCCTGA  800
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAGGTTTAGTGCTTACTCTTCCCACTCTTCTGGGGAACAGCCTGA  787

seq1  GTCTGGTGTGCAGCATCCACATCAGGTGGCTCACTACTGCCTGTAACAGC  850
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTATGGTGTGCAGCATCCACATCAGGTGGCTCACTACTGCTTGTAACAGC  837

seq1  AGTTCCATGCAAATGTCTTTCTTTAATCTGCTCCAAATTCAATGAAGTAC  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTTCCATGCAAATGTCTTTCTTTAATCTGCTCCAAATTCAATGAAGTTC  887

seq1  CTAACACAAGATTATGAGCCCAAGAAAATTAGTCGCCACAAACAGAATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACAAGATTATGAGCCCAAGAAAATTAGTCGCCACAAACAGAATAT  937

seq1  GAGTCTCTTTGCATTCCAAAAAAGGGTTAACAACTGTAAGGAGCTTTGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCTTTGCATTCCAAAAAAGGGTTAACAACTGTAAGGAGCTTTGCA  987

seq1  TAATCTTCAATATTTTTTTTTCTAGTTCAGCCAGACAAAAGGAAAAGAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTCAATATTTTTTTTTCTAGTTCAGCCAGACAAAAGGAAAAGAAA  1037

seq1  AGACCCCCAAGTCAGGGATAAAGTTTTGCTAAAACTGAGTGAATTC  1096
      |||||||||||||||||||||||||||| |||||||||| ||||||
seq2  AGACCCCCAAGTCAGGGATAAAGTTTTGATAAAACTGAG-GAATTC  1082