BAC Information

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BAC

Clone NameMSMg01-045I12
Chromosome9 (Build37)
Map Location 3,446,119 - 3,446,365
singlet/doubletsinglet
Overlap geneCwf19l2
Upstream gene4930433N12Rik, LOC664797, Olfr369-ps1, Alkbh8
Downstream geneLOC384911, Gucy1a2, LOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045I12.T7 (MSMg01no045_i12.b1)MSMg01-045I12.TJ (MSMg01no045_i12.g1)
ACCAG276142AG276143
length773747
length of high quality
(start - end)
299 (139 - 437)247 (127 - 373)
definitionCHROMAT_FILE: MSMg01no045_i12.b1 PHD_FILE: MSMg01no045_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:30 2005CHROMAT_FILE: MSMg01no045_i12.g1 PHD_FILE: MSMg01no045_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCNNNNNNAATNNCA
TTTCGTGTTCGCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTC
TGAGAAGCCGCGGAATTCGAAGTTTTTTCGCTACAAGGATTTTCTAGAAT
GTTGGAACACTGGCAAAGGCTTAGCTATGTCAGAATTCAATCTTTAAAGG
CACTTAAAATAAAATAATACTAAAAGAGAGCATGTGGATCCATACACCAG
ACTAACTCGGGGATAGGGTATGAGTATACGAGTTATGAGAATGCCTGGTT
TCAGGAGGTTGAGTTTCCTTGAAACTCCCTGCCTCATGAGTGCTTCCATG
CCTCTCGGCCTGCCAAGCAGACTTCACTGGAGTGTGCGTAGCATCTGGTA
ATCTCTGGTGTTAGATATACTAGCTGTCTCTGGCTGGAGCATATTTCTCT
TCAGGCTGTAAGCCTATGTCAGCACTTCAGAGAGACCAGCTTTCTCCTGG
CAAGACCATTGTTCTAGAGGGCTGTGTGAACCGCCCCACCTCCTAACTGG
AGATGTAAACCCATTATATGAACGTGTTAGGAGAAGTCTCAATTGCTTCT
TTTGGCCCATGCTTTTTCTGATTGGACTTGCCTTTAAATAGACCCCCTAG
TATAAATTGAATATCTCCTCTGACACCTGGGTATCAGAACACTCCCTTGG
CAGGCCATCTTCTCCTTCTGGCATGGTAACTACCTATTATCATTCCATCC
CATTGATTACCTATTAATTTTTC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTAAATC
NTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTTTATTTTGAGTTCTGACACG
AGGAGGAGATTAAGATGTGAATAATTTGATCAGCTTCTTTTCAATGATCT
TTAATGAATCTATCACCTAATGCTCTTATTGATTATTACCAATGACATTT
ATGTTCATCATAGAAAACTTTCATGTTATGCCATTTTAAGTTTATGTTGT
GTTATGTTACATTTCGCTACAATTTTTTAGGAAAGATAATGTCTTTAAAC
TATGTGAAATATAATAGCTTATGATTAGCCAGACACATGAAAGATATTTG
AAAATTGTTAAGACAAGGGAACATTAATATCATCACAATAGCTACTTTGA
AAAGACTGCTTTGACAATTGGTTGCCTTGTTACAAGTTATACGTTTATGA
TACACCCATTGCATATGATATCCACTCTATCCAAGATGGTTATTCTCATA
CAGGTCCAATATACTACTGGTACTTTATCATCCTTTCTTTTTTCTCCTAC
CATAATGTTTTTATGGATTAATTTGCTAATTTCACATAGTCGCACCCTGA
TCTCTTTTTCCAGATCCTTTATGGTTCATCCCTCCCCTCCCTTGTGCCTT
TTCTGGACCTTTTCCAAGAATACAACGATTTCCCCTATCACCAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_i12.g1 MSMg01no045_i12.g1 CHROMAT_FILE:
MSMg01no045_i12.g1 PHD_FILE: MSMg01no045_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:31 2005
         (247 letters)



>mm_chr9_3445919_3446565
          Length = 647

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttattttgagttctgacacgaggaggagattaagatgtgaataatttgatcagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttttattttgagttctgacacgaggaggagattaagatgtgaataatttgatcagctt 260

                                                                       
Query: 61  cttttcaatgatctttaatgaatctatcacctaatgctcttattgattattaccaatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttcaatgatctttaatgaatctatcacctaatgctcttattgattattaccaatgac 320

                                                                       
Query: 121 atttatgttcatcatagaaaactttcatgttatgccattttaagtttatgttgtgttatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttatgttcatcatagaaaactttcatgttatgccattttaagtttatgttgtgttatg 380

                                                                       
Query: 181 ttacatttcgctacaattttttaggaaagataatgtctttaaactatgtgaaatataata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacatttcgctacaattttttaggaaagataatgtctttaaactatgtgaaatataata 440

                  
Query: 241 gcttatg 247
           |||||||
Sbjct: 441 gcttatg 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)