BAC Information

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BAC

Clone NameMSMg01-045J04
Chromosome9 (Build37)
Map Location 7,047,112 - 7,047,573
singlet/doubletsinglet
Overlap geneDync2h1
Upstream geneLOC676037, Pdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034, LOC100039658
Downstream geneDcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045J04.T7 (MSMg01no045_j04.b1)MSMg01-045J04.TJ (MSMg01no045_j04.g1)
ACCAG276172AG276173
length754670
length of high quality
(start - end)
370 (107 - 476)463 (56 - 518)
definitionCHROMAT_FILE: MSMg01no045_j04.b1 PHD_FILE: MSMg01no045_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:34 2005CHROMAT_FILE: MSMg01no045_j04.g1 PHD_FILE: MSMg01no045_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTTTTTNNNTTTNNNTTTTTTTTTTNTTTTNNTTNNNTTTAAAACC
CCCCNCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAGATCC
GCGGAATTCTCACCTGAGGAATACCAAATGGCAGAAAACACCTGAAAAAA
TGTTCAACATCCTTCATCATCAGGGAAATGCAAATCAAAACAACACTGAG
ATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGTGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGAGGTTCCT
CAGAAAATTGCACATAGTACTACGGGAGGATCCCGCAATACCTCTCCTGG
GCATATATCCAGAAGTTGTCCCAACCGGTAAGAAGGACTCATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAACAGCCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAACAGAGGTATGGATACAGAAAATGTGGTACATTTACACAA
TGGAATACTATCAGCTATTAAAAAGAATGAATTTATGAAAATCCTAGGCA
AATGGATGGACCTGGAGGGCATCATTCCTGTGTGAGGTAACCCCAATTAC
AAAGGAAATCATCCAATATGTACTCCACTGGAAAGGGGATATTAAGCCAA
AAATCTTAGGAATCCCCAGCATATAAGAATACAACTTGCCTAACCGCATT
GGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAAGGTTACATATACATAGTGGGTTCATATCTCAAAAACCTAAAAC
AAAACACACCATAAACCACCCCACAAAAGCCATGATGGTTTAAGAATTGT
TTCCTAAAAGTGCATGTAATCGAAGACAAGCCTTTAGAAAACATGTTTGG
GGGCAGGGGGAGGGTGCTAATAACTGAAAAGACAACTGTCTTCAGAATTG
GGTTTGATAGTCAATATAGAAAGTTGGCTTTGAATTGAATTTTAATATGT
CAATTTTTTTTGAATACTCATGCACAGTTCTAATCACTCCTTCCAAAAAA
AAAATCTCTTGGAAAATGGATGAGAATGAATTTGCCATTATAGTAAATAT
TGTATCTCAGTCTAAGGTAGGATAGGCCTGAAATATGCTATATTCAAATG
TGTGGTTGGGAAGCACATGCTTAGTAACATCTTCTATGAATGTACTAGGT
GTGGCTTGTGAAATTGTGTAAAGCCTATTTGCATATCAGACTTGCTAAGT
GGCTGAAGTTGACCTTGAACTTCTGACCTTTTTTACTCTATTTCCCAAGT
ATTAGTATTATGCATAGGGCTAAGTCCAGATGGTGGCCCCCTTCTATCTT
AAGGAGTATAGGGATTTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_j04.g1 MSMg01no045_j04.g1 CHROMAT_FILE:
MSMg01no045_j04.g1 PHD_FILE: MSMg01no045_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:34 2005
         (463 letters)



>mm_chr9_7046912_7047773
          Length = 862

 Score =  849 bits (439), Expect = 0.0
 Identities = 457/463 (98%), Gaps = 1/463 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggttacatatacatagtgggttcatatctcaaaaacctaaaacaaaacacaccataaa 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aaggttatatatacatagtgggttcatatctcaaaaacctaaaacaaaacacaccataaa 603

                                                                       
Query: 61  ccaccccacaaaagccatgatggtttaagaattgtttcctaaaagtgcatgtaatcgaag 120
           |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 602 ccaccccacaaaagccatgatggtttaagaattgtttcctaaaactgcatgttatcgaag 543

                                                                       
Query: 121 acaagcctttagaaaacatgtttgggggcagggggagggtgctaataactgaaaagacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 acaagcctttagaaaacatgtttgggggcagggggagggtgctaataactgaaaagacaa 483

                                                                       
Query: 181 ctgtcttcagaattgggtttgatagtcaatatagaaagttggctttgaattgaattttaa 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 482 ctgtcttcagaattgggtttgatagtcaatatagaaagttgcctttgaattgaattttaa 423

                                                                       
Query: 241 tatgtcaattttttttgaatactcatgcacagttctaatcactccttccaaaaaaaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 422 tatgtcaattttttttgaatactcatgcacagttctaatcactccttcc-aaaaaaaaat 364

                                                                       
Query: 301 ctcttggaaaatggatgagaatgaatttgccattatagtaaatattgtatctcagtctaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctcttggaaaatggatgagaatgaatttgccattatagtaaatattgtatctcagtctaa 304

                                                                       
Query: 361 ggtaggataggcctgaaatatgctatattcaaatgtgtggttgggaagcacatgcttagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 303 ggtaggataggcctgaaatatgctatattcaaatgtgtggttgggaagcgcatgcttagt 244

                                                      
Query: 421 aacatcttctatgaatgtactaggtgtggcttgtgaaattgtg 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aacatcttctatgaatgtactaggtgtggcttgtgaaattgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 862
Length adjustment: 10
Effective length of query: 453
Effective length of database: 852
Effective search space:   385956
Effective search space used:   385956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)