BAC Information

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BAC

Clone NameMSMg01-045J21
Chromosome9 (Build37)
Map Location 34,053,262 - 34,053,846
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042343
Downstream geneKirrel3, St3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045J21.T7 (MSMg01no045_j21.b1)MSMg01-045J21.TJ (MSMg01no045_j21.g1)
ACCAG276203AG276204
length646660
length of high quality
(start - end)
380 (12 - 391)584 (53 - 636)
definitionCHROMAT_FILE: MSMg01no045_j21.b1 PHD_FILE: MSMg01no045_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:37 2005CHROMAT_FILE: MSMg01no045_j21.g1 PHD_FILE: MSMg01no045_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAAGATCCGCGGAATTCCTGATCTTTCCAGATTTTAATTATGAATGGG
TGTTGGATTTTTTCAATGCTTTTTCTGCATCTAACGAGATGATCATGTGG
TTTTTGTCCTTGAGTTTGTTTATATACTGGATTACATTGATGGATTTCCA
TATATTGAACCATCCCTGAATCCCTGGGATGAAACCTACATGGTCATGAT
GGATGTTTGTTTTGATGTGTTCTTGGATTTGGTTAGCGAGAACTTTATTG
AGGATTTTTGCATTGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTAT
GTTTGTTGGGTCTTTTTGTGGTTTAGGTATCAGAGTAATGGTGGCTTCAT
AGAATGAGTTGGGTAGAGTGCCTTCCGCTTCTATTTTGTGGAATAGATTG
TGAAGAACTGGGATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACT
AAACCCATCTGATCCTGGGCTTTTTTTTTGGTTGGGAGACTAATGACTGC
TTCTATTTCTTTATGGGATATTAGAGGACTGTTTATATCATTAACTTGAT
CTTGATTTAACTTTGTTACCTGGTATCTGTCTAGAAACTTGTCCATGTTA
TCCAGGTTTTCCCATTTTGTTGAGATTATCCTTTTTTATAATGATC
GGCGGCGCCTGGTCCCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXACTCACATGTTGGCACTTGATGGAGAGAAGGAGAAAAATCAAATGCTT
TAGTGGCCCGGACGCTACCACTCTTGACGTGAACATTTTTAGCTCCATTT
AGCTCTCTCAAATAATGGGGTTATAAAATCATTTTACAAGGATGACACCA
TTAGCAAATGCTGTTCTTCTTTGCCTTGGAACTTGAAATGTATCAATTAG
CAAATGTTTACTGAGTGTCCACTACATGCCAACACTGGGCTAGGCATGAA
AGGAGAGCGGGCAATACTGTAAAGTGTTGGCATGTGGTGACAGTGACTTG
GTGGAATACTGTGTTGGGCTCTTTTAAGTCCTCTCCTCATTTTATCCAAG
TTGCTGTTGTAGTTTGCTTTCTGTTGCTGTGATAAACCGCTGACCAAAAA
CAAGTCAGGGAGGGAGGGGTTTGCTTTACACTGTCACACCACAGTCAGAA
AGGTAGAGCAGAACTCAAGCAGGAACCTGTAGGCAAGGTATGAAGCAGAA
GACATGGAAGTAGGCTGCCTGGTACCTCACTGTCTTTGTCCTGTTCAAGT
GCATTACTTAAATAGCCCAGGACTACCTGCCTAGACATGGCGTGACTCAC
AAGTGGGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_j21.g1 MSMg01no045_j21.g1 CHROMAT_FILE:
MSMg01no045_j21.g1 PHD_FILE: MSMg01no045_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:37 2005
         (584 letters)



>mm_chr9_34053051_34054034
          Length = 984

 Score = 1108 bits (573), Expect = 0.0
 Identities = 582/585 (99%), Gaps = 1/585 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcacatgttggcacttgatggagagaaggagaaaaatcaaatgctttagtggcccgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 actcacatgttggcacttgatggagagaaggagaaaaatcaaatgctttagtggcccgga 737

                                                                       
Query: 61  cgctaccactcttgacgtgaacatttttagctccatttagctctctcaaa-taatggggt 119
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 736 cgctaccactcttgacgtgaacatttttagctccatttagctctctcaaactaatggggt 677

                                                                       
Query: 120 tataaaatcattttacaaggatgacaccattagcaaatgctgttcttctttgccttggaa 179
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tataaaatcattttgcaaggatgacaccattagcaaatgctgttcttctttgccttggaa 617

                                                                       
Query: 180 cttgaaatgtatcaattagcaaatgtttactgagtgtccactacatgccaacactgggct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cttgaaatgtatcaattagcaaatgtttactgagtgtccactacatgccaacactgggct 557

                                                                       
Query: 240 aggcatgaaaggagagcgggcaatactgtaaagtgttggcatgtggtgacagtgacttgg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aggcatgaaaggagagcgggcaatactgtaaagtgttggcatgtggtgacagtgacttgg 497

                                                                       
Query: 300 tggaatactgtgttgggctcttttaagtcctctcctcattttatccaagttgctgttgta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tggaatactgtgttgggctcttttaagtcctctcctcattttatccaagttgctgttgta 437

                                                                       
Query: 360 gtttgctttctgttgctgtgataaaccgctgaccaaaaacaagtcagggagggaggggtt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtttgctttctgttgctgtgataaaccgctgaccaaaaacaagtcagggagggaggggtt 377

                                                                       
Query: 420 tgctttacactgtcacaccacagtcagaaaggtagagcagaactcaagcaggaacctgta 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 376 tgctttacactgtcacaccacagtcagaaaggtagagcagaactcaagcaggaaactgta 317

                                                                       
Query: 480 ggcaaggtatgaagcagaagacatggaagtaggctgcctggtacctcactgtctttgtcc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggcaaggtatgaagcagaagacatggaagtaggctgcctggtacctcactgtctttgtcc 257

                                                        
Query: 540 tgttcaagtgcattacttaaatagcccaggactacctgcctagac 584
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgttcaagtgcattacttaaatagcccaggactacctgcctagac 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)