BAC Information

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BAC

Clone NameMSMg01-045K09
Chromosome9 (Build37)
Map Location 29,000,601 - 29,104,705
singlet/doubletdoublet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045K09.T7 (MSMg01no045_k09.b1)MSMg01-045K09.TJ (MSMg01no045_k09.g1)
ACCAG276227AG276228
length744674
length of high quality
(start - end)
381 (118 - 498)248 (166 - 413)
definitionCHROMAT_FILE: MSMg01no045_k09.b1 PHD_FILE: MSMg01no045_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:39 2005CHROMAT_FILE: MSMg01no045_k09.g1 PHD_FILE: MSMg01no045_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,104,325 - 29,104,705)(29,000,601 - 29,000,839)
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNTTTTTTCCTTTTTCTA
CCACTTCATAATTGCGGCGCTAAACGACTCCTATTTCCAGAAATCCGCGG
AATTCTACTGTATCCACCACTCTCTGGGTGTTTTCTACCCTTGCTCAGTG
AATGTGCCTCACAACGTTTGGCTGCCACTTTTGATCAACTTTATCTTGAG
ACTTTTAGTGCATATATTTACTGATCTCTTTTCTTGGCTACAGCAGATGC
CAGTAGGCTTTATTTAGCATGGTTCTGAGACATTTATACGCATAGCCTTG
GGGAATGCTGCTTGTAAGTTACAGGGTATCTGTTATCAGCCTCTAAACTT
GTTAGTAAATTTTGAGAGCTGCATGGCATTGCAAAAGATCCTGCCCTACT
TTTGACAGTCACTATGAGCTTACCTATCAGCCTTCTTAGACTTAGAGTCT
AGGATCTCATCTCTGTCTGTGAAGTACATTTCAGACCATGTTGCTGAGGT
CAGTGGTCAAACGGCATCCTCAATCTAAGTTTCTCTTGAACTCATTGGTT
AAACTCAAGATGAGTATTTCATTGTCATCTTTAGTTCTGAATTTGTCCTG
TGGGTGGAGTGCCTGTAAGTGCCTGGTAAAAAGAACAGAGGACAGAGCCT
TTACAAATGTGCATCATTTCTCTTTTAAAATTCGAGAGCTGCAATCCAAA
GTGCTGTTTAGCACCTTCATCTTGGTGATAATTGGATTTGTAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXATATTGGATTTAATGAAGCAGCAGGCAGGAGAGAGAGGATGGTAGG
GAAGCCAGCCACTGCCGGCCACAATGGGAACGCTGAACTCTGTAGTTCTT
ACCTGCTTCACTCGTTCCTATCATCAGAGAACTGCCCACATAGATGATCC
CTTATAACCTCACTGGTTGGAGTTAAACACGTTTGCCAGTTAGATTCATG
TAAGGGTTCTTTGTGGCTCAAGGGATTCCTGCATGTTCTTTTGGTCACTT
AATTGTCCTTCTGTTCACAGTTGCATGGATAAACTAGGGTGTATTTGAAA
AAGTTCAGAAATCTACTTGTTTGCCTTTGTATTCCCTGAGCTCCTACTAT
GTTCTCAACACCCCTGTGCTAATCACTTACAGATTCTTTACAAAAGCATA
AGATAGAGACACAGGCCTATTCTCTTCATACCGGAGGGGACTTACAGAAG
GTGTGTAGTCCCCATATAGGCATGCAGAAATGTGGCACTTGCCCCGACAG
GTAACTATTAGTGACTCGCCCACAACTTATAGCGTCTGGTGAACCCACCC
CTTATCTGATAGGTCCTGAAAACTCCTCCCTAAGTGCCATATACCTGAAC
CTCTTGCAAACGGCTATCTACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_k09.b1 MSMg01no045_k09.b1 CHROMAT_FILE:
MSMg01no045_k09.b1 PHD_FILE: MSMg01no045_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:39 2005
         (381 letters)



>mm_chr9_29104125_29104905
          Length = 781

 Score =  729 bits (377), Expect = 0.0
 Identities = 380/381 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactctctgggtgttttctacccttgctcagtgaatgtgcctcacaacgtttggctgcca 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cactctccgggtgttttctacccttgctcagtgaatgtgcctcacaacgtttggctgcca 522

                                                                       
Query: 61  cttttgatcaactttatcttgagacttttagtgcatatatttactgatctcttttcttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cttttgatcaactttatcttgagacttttagtgcatatatttactgatctcttttcttgg 462

                                                                       
Query: 121 ctacagcagatgccagtaggctttatttagcatggttctgagacatttatacgcatagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ctacagcagatgccagtaggctttatttagcatggttctgagacatttatacgcatagcc 402

                                                                       
Query: 181 ttggggaatgctgcttgtaagttacagggtatctgttatcagcctctaaacttgttagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttggggaatgctgcttgtaagttacagggtatctgttatcagcctctaaacttgttagta 342

                                                                       
Query: 241 aattttgagagctgcatggcattgcaaaagatcctgccctacttttgacagtcactatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aattttgagagctgcatggcattgcaaaagatcctgccctacttttgacagtcactatga 282

                                                                       
Query: 301 gcttacctatcagccttcttagacttagagtctaggatctcatctctgtctgtgaagtac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gcttacctatcagccttcttagacttagagtctaggatctcatctctgtctgtgaagtac 222

                                
Query: 361 atttcagaccatgttgctgag 381
           |||||||||||||||||||||
Sbjct: 221 atttcagaccatgttgctgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no045_k09.g1 MSMg01no045_k09.g1 CHROMAT_FILE:
MSMg01no045_k09.g1 PHD_FILE: MSMg01no045_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:39 2005
         (248 letters)



>mm_chr9_29000401_29001048
          Length = 648

 Score =  408 bits (211), Expect = e-118
 Identities = 232/239 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctatcatcagagaactgcccacatagatgatcccttataacctcactggttggagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctatcatcagagaactgcccacatagatgatcccttataacctcactggttggagtta 260

                                                                       
Query: 61  aacacgtttgccagttagattcatgtaagggttctttgtggctcaagggattcctgcatg 120
           |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacacgtttggcagttagattcgtgtaagggttctttgtggctcaagggattcctgcatg 320

                                                                       
Query: 121 ttcttttggtcacttaattgtccttctgttcacagttgcatggataaactagggtgtatt 180
           ||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctttcagtcactgaattgtccttctgttcacagttgcatggataaactagggtgtatt 380

                                                                      
Query: 181 tgaaaaagttcagaaatctacttgtttgcctttgtattccctgagctcctactatgttc 239
           ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tgaaaaagttcagaaatgtacttgtttgcctttgtattccctgagttcctactatgttc 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)