BAC Information

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BAC

Clone NameMSMg01-045L03
Chromosome9 (Build37)
Map Location 101,338,807 - 101,339,250
singlet/doubletsinglet
Overlap genenone
Upstream geneIl20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065
Downstream geneEG382099, Ephb1, 9630041A04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045L03.T7 (MSMg01no045_l03.b1)MSMg01-045L03.TJ (MSMg01no045_l03.g1)
ACCAG276262AG276263
length1,033691
length of high quality
(start - end)		---446 (73 - 518)
definitionCHROMAT_FILE: MSMg01no045_l03.b1 PHD_FILE: MSMg01no045_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:42 2005CHROMAT_FILE: MSMg01no045_l03.g1 PHD_FILE: MSMg01no045_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCGTTTTCTCCTCTACACTCCCCTGACTCCTTATAACGACTAGACCCC
ACTTCATTTTTTATTTTTTTTTAATCGGGGAGTCAGGAACGAGCGGAGTG
TNGGATGGTGGGCGAGGCGTGGCTACGAGTCGCGTGTCGTTGGCGGGGTG
TATTCATCCTACGCTGCCTTCACTTCTTGCTATGGCTATTGCTCTTCGTA
CTGCCTTTCCACCCCAAGGGGGGCGCAGGGAAGCGGGCGGGGGGGTAGCG
GGGAGGCGCAGGGGCGCGGCGGAGCGGAAATGTTTAATTGCGTAAAGGCG
CGACTCATATACTATATGGCCCGTCCGCACGCCCTCCGCCCCCGCGCGCG
CGGCATCGGCTGGCCACCTCACCCGCAGTTGGGAGAGGGGCGCTAGGGGG
CAACGACGTGTAGAACGCGGAATAGACAAGGCCCCTGTCTCTGTGCCCCC
CCCTCCATCCCCATTACTTCCTCTCTGCCCCTATTATTACTCACTACCAA
CACATAAACTTATTCTAATATATATCCTCATTATTACTATTAATTCTATA
TAAATAAATCTATTCATGTATTGTATTATCAACTCATACATTCTCAACTT
GGCGTTTGTCTTGTCTGTGTTGTACGAATATTCGCGTAGCCGAGACACAC
ATGCATCACTTAGCGGTCCTAGACCCGTCGTGTCCCCGCACCCGCCCACG
TTTGGTCACCAGCCTTATCCATGTTTGTGTATGCGTCGTCTATGCAAAAC
GATCCCCTGATAAAAGTCTCGACACCCCGGCGCAACGCGTGTGTCGCACC
TGTCTATAAGTAGAGTGCCATCCTATCCCGGTATTATAACACCCTTGTTT
GTTCACCATTCCCCTGCCAGCTTTATTGTTGTCGACGCTGACGCTTGTCA
CACGCCTTCTCGCCTTATAGACTATCACCGTTTATTCTCTCTCCATTTCA
TAGATGAGTAGATCCTATATTCCATCCTCGGCCACGCACACGATCTACAA
GATCACCGAAAGGACGTATTACATGAAGAGCCC

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAACCCAGATATGCCTGACCCTGTGGGT
GCCTCTTAATTTCTCTGTATGCCTTCCTACCTCACAATCTAATGCATTGA
ACGAAACCAAACCAAAGCACAGCGTTGATAAGTTACTCAGGCATGGGAGG
CTGCTGGGAGTGGCCAGTGTGAGCCAGATGGACCGAGGAAGACTTTTTTT
TAGAAGAGAAGCTATGGAGCTTGGCTTCTGACTGATAGATTTGGATTTGA
GTGGTTAAAAGAAATGAACAATGAGTACATCACCCCTGGCTGCTGGGGGA
GGGGGGGCTTATGGAGAGACACAAGGGTGGGGCAGGTTTCCATCAAATCA
GAAGAAGCATAAAGAAGAATTGATATGGCCCAACTGAAGAGAGTATTTGT
GTCCAGTGTGGTACACAGAATGACCAAGACAGGACTTATTGTAAGGAGGA
GGAGGAGGAGGAGGTGTNATTTTTCTTTTGATTTGNTTTTTTTTTTTTTT
TGTTTTTTTTGTTTGTTTTTNTTTTTTTTTGTTTTTTTTTTTCTTTTTTG
TGTTGTTTTGNTTTTTGNTGTTTTTTTTGATTGTTCTGATTGTTTTGTTT
TTGTTGTTTGCGTTTTGTTCTTTATTATTTGTTCCCTGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_l03.g1 MSMg01no045_l03.g1 CHROMAT_FILE:
MSMg01no045_l03.g1 PHD_FILE: MSMg01no045_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:43 2005
         (446 letters)



>mm_chr9_101338607_101339452
          Length = 846

 Score =  859 bits (444), Expect = 0.0
 Identities = 444/444 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacccagatatgcctgaccctgtgggtgcctcttaatttctctgtatgccttcctacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacccagatatgcctgaccctgtgggtgcctcttaatttctctgtatgccttcctacct 260

                                                                       
Query: 61  cacaatctaatgcattgaacgaaaccaaaccaaagcacagcgttgataagttactcaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaatctaatgcattgaacgaaaccaaaccaaagcacagcgttgataagttactcaggc 320

                                                                       
Query: 121 atgggaggctgctgggagtggccagtgtgagccagatggaccgaggaagactttttttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgggaggctgctgggagtggccagtgtgagccagatggaccgaggaagactttttttta 380

                                                                       
Query: 181 gaagagaagctatggagcttggcttctgactgatagatttggatttgagtggttaaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagagaagctatggagcttggcttctgactgatagatttggatttgagtggttaaaaga 440

                                                                       
Query: 241 aatgaacaatgagtacatcacccctggctgctgggggagggggggcttatggagagacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgaacaatgagtacatcacccctggctgctgggggagggggggcttatggagagacac 500

                                                                       
Query: 301 aagggtggggcaggtttccatcaaatcagaagaagcataaagaagaattgatatggccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagggtggggcaggtttccatcaaatcagaagaagcataaagaagaattgatatggccca 560

                                                                       
Query: 361 actgaagagagtatttgtgtccagtgtggtacacagaatgaccaagacaggacttattgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgaagagagtatttgtgtccagtgtggtacacagaatgaccaagacaggacttattgt 620

                                   
Query: 421 aaggaggaggaggaggaggaggtg 444
           ||||||||||||||||||||||||
Sbjct: 621 aaggaggaggaggaggaggaggtg 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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