Query= MSMg01no046_c20.b1 MSMg01no046_c20.b1 CHROMAT_FILE:
MSMg01no046_c20.b1 PHD_FILE: MSMg01no046_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:17 2005
(488 letters)
>mm_chr9_49535970_49536862
Length = 893
Score = 853 bits (441), Expect = 0.0
Identities = 478/495 (96%), Gaps = 9/495 (1%)
Strand = Plus / Minus
Query: 1 gcttctggctttagaattaggagcaataattgcagccctgggatgagcccggaatctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gcttctggctttagaattaggagcaataattgcagccctgggatgagcccggaatctgaa 634
Query: 61 ataggctatttcctga-------gtactgctgtgggcttactgcgggaggcagagctgag 113
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 633 ataggctatttcctgagtgacgggtactgctgtgggcttactgcgggaggccgagctgag 574
Query: 114 cagagtcctgttccacaccataccctggagtaatggcaacagaagtagtagctattgtcc 173
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 573 cagagtcctgttccacaccataccccggagtaatggcaacagaagtagtagctattgtcc 514
Query: 174 tcgtgatggtagtaatgggtgtcgtcattgtctccctagcaaccgcaacactgccttagt 233
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tcgtgatggtagtagtgggtgtcgtcattgtctccctagcaaccgcaacactgccttagt 454
Query: 234 tgttattttgaaactcagcagcagacatgcagatgggatggggttgggaggggcccggct 293
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 453 tgttattttgaaactcagcagcagacatgcagatgggatggggttgagaggggcctggct 394
Query: 294 tcaggattccatatgtggggacagaatgaaggagtttatcacttgtgacctcacttcggg 353
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tcaggattccatatg--gggacagaatgaaggagtttatcacttgtgacctcacttcggg 336
Query: 354 tttagtttcccttcaccttcagtgaaaagggacacattcttttcatgaactctgaggaaa 413
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tttagtttcccttcaccttcaatgaaaagggacacattcttttcatgaactctgaggaaa 276
Query: 414 gaacagtggccattctctggagaattgaaaagctcccatgagtttaaggcaaacaaaacc 473
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gaacagaggccgttctctggagaattgaaaagctcccatgagtttaaggcaaacaaaacc 216
Query: 474 cgaggctgggtacct 488
|||||||||||||||
Sbjct: 215 cgaggctgggtacct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 893
Length adjustment: 10
Effective length of query: 478
Effective length of database: 883
Effective search space: 422074
Effective search space used: 422074
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_c20.g1 MSMg01no046_c20.g1 CHROMAT_FILE:
MSMg01no046_c20.g1 PHD_FILE: MSMg01no046_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:17 2005
(575 letters)
>mm_chr9_49378330_49379304
Length = 975
Score = 1065 bits (551), Expect = 0.0
Identities = 569/575 (98%)
Strand = Plus / Plus
Query: 1 ttcgcaccccttggcgactttccctgaattcttatttgaatatccacacgctcagtcttc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ttcgcaccccttggcgactttccctgaattcttatttgaatatccacaagctcagtcttc 260
Query: 61 ccatggtactgataagaaaatacacaacaccagatctcaccgcttaaccgcttcactctg 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ccatggtactgataagaaaatacacaacaccagatctcaccgcttacccgcttcactctg 320
Query: 121 cttcccgtttatcatctccttagagcagataacaactgttcatgaaaatcagttttagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcccgtttatcatctccttagagcagataacaactgttcatgaaaatcagttttagga 380
Query: 181 tgggaaaacagaatgttttattcatttgaaatcaacttccttctgcctctgctgtcttta 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggaaaacagaatgttttattcatttgaaatcaacttccttctgcctctgctgtcttta 440
Query: 241 aataaatctgaaaggctaaggctagcactcagtgggttcaatggcaggaactcctcagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataaatctgaaaggctaaggctagcactcagtgggttcaatggcaggaactcctcagag 500
Query: 301 ccattatgaagcaagccctctcctacatcctacatccccctagaaagcaaccaggctggg 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccattatgaagcaaaccctctcctacatcctacatccccctagaaagcaaccaggctggg 560
Query: 361 tcatagagactgggagctcttccttccaacagccattttctgttcacagaagaagaggga 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgatagagactgggagctcttccttccaacagccattttctgttcacagaagaagaggga 620
Query: 421 aagcttgttgccatggtgaccagcttgcaggcagggttggagcagcagctctaagtctag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 aagcttgttgccatggtgaccagcttgcaggcagggttggagcagcagctctaagtccag 680
Query: 481 gctcctgagacaggagaccaaggttgggctctgcagaatacagagatcaaagagcctgcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctcctgagacaggagaccaaggttgggctctgcagaatacagagatcaaagagcctgcc 740
Query: 541 tggggctggaaagggagtgcacggtggggtggggt 575
|||||||||||||||||||||||||||||||||||
Sbjct: 741 tggggctggaaagggagtgcacggtggggtggggt 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
